Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	H	P	L	V	M	G	N	W	K	L	N	G	S	R	H	M	V	H	E	L	V	S	N	L	R	K	E	L	A	G	V	A	G	C	A	V	A	I	A	P	P	E	M	Y	I	D	M	A	K	R	E	A	E	G	S	H	I	M
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	G	A	Q	N	V	D	L	N	L	S	G	A	F	T	G	E	T	S	A	A	M	L	K	D	I	G	A	Q	Y	I	I	I	G	H	S	E	R	R	T	Y	H	K	E	S	D	E	L	I	A	K	K	F	A	V	L	K	E	Q	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	T	P	V	L	C	I	G	E	T	E	A	E	N	E	A	G	K	T	E	E	V	C	A	R	Q	I	D	A	V	L	K	T	Q	G	A	A	A	F	E	G	A	V	I	A	Y	E	P	V	W	A	I	G	T	G	K	S	A	T	P
Secondary structure
SS confidence
Disorder															?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	Q	A	Q	A	V	H	K	F	I	R	D	H	I	A	K	V	D	A	N	I	A	E	Q	V	I	I	Q	Y	G	G	S	V	N	A	S	N	A	A	E	L	F	A	Q	P	D	I	D	G	A	L	V	G	G	A	S	L	K	A	D
Secondary structure
SS confidence
Disorder																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Sequence		A	F	A	V	I	V	K	A	A	E	A	A	K	Q	A
Secondary structure
SS confidence
Disorder													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tre chain A Region: 1 - 255 Aligned: 255 Modelled: 255 Confidence: 100.0% Identity: 100% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 1aw1 chain A Region: 2 - 253 Aligned: 252 Modelled: 252 Confidence: 100.0% Identity: 66% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 1yya chain A Region: 1 - 249 Aligned: 248 Modelled: 249 Confidence: 100.0% Identity: 42% PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8 Phyre2 PDB 2dp3 chain A Region: 2 - 253 Aligned: 250 Modelled: 252 Confidence: 100.0% Identity: 42% PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia Phyre2 PDB 1b9b chain A Region: 2 - 252 Aligned: 250 Modelled: 250 Confidence: 100.0% Identity: 43% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 3m9y chain B Region: 1 - 250 Aligned: 249 Modelled: 250 Confidence: 100.0% Identity: 42% PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution Phyre2 PDB 2btm chain A Region: 2 - 250 Aligned: 249 Modelled: 249 Confidence: 100.0% Identity: 41% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 1mo0 chain A Region: 1 - 252 Aligned: 247 Modelled: 252 Confidence: 100.0% Identity: 48% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 3gvg chain A Region: 2 - 250 Aligned: 249 Modelled: 249 Confidence: 100.0% Identity: 42% PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from mycobacterium2 tuberculosis Phyre2 PDB 1m6j chain A Region: 2 - 251 Aligned: 249 Modelled: 250 Confidence: 100.0% Identity: 43% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 1kv5 chain A Region: 2 - 250 Aligned: 246 Modelled: 249 Confidence: 100.0% Identity: 43% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 1sux chain A Region: 2 - 250 Aligned: 246 Modelled: 249 Confidence: 100.0% Identity: 43% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 1n55 chain A Region: 2 - 250 Aligned: 246 Modelled: 249 Confidence: 100.0% Identity: 43% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 1sw3 chain A Region: 1 - 250 Aligned: 245 Modelled: 250 Confidence: 100.0% Identity: 46% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 1o5x chain A Region: 2 - 249 Aligned: 244 Modelled: 248 Confidence: 100.0% Identity: 40% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 1r2r chain A Region: 2 - 250 Aligned: 244 Modelled: 249 Confidence: 100.0% Identity: 45% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 3krs chain B Region: 2 - 250 Aligned: 244 Modelled: 249 Confidence: 100.0% Identity: 42% PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: structure of triosephosphate isomerase from cryptosporidium parvum at2 1.55a resolution Phyre2 PDB 1ney chain A Region: 2 - 250 Aligned: 244 Modelled: 249 Confidence: 100.0% Identity: 45% Fold: TIM beta/alpha-barrel Superfamily: Triosephosphate isomerase (TIM) Family: Triosephosphate isomerase (TIM) Phyre2 PDB 3s6d chain A Region: 1 - 253 Aligned: 246 Modelled: 248 Confidence: 100.0% Identity: 28% PDB header:isomerase Chain: A: PDB Molecule:putative triosephosphate isomerase; PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis Phyre2 PDB 3th6 chain B Region: 2 - 250 Aligned: 239 Modelled: 249 Confidence: 100.0% Identity: 46% PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from rhipicephalus2 (boophilus) microplus. Phyre2 1 d1trea_ 2 d1aw1a_ 3 c1yyaA_ 4 c2dp3A_ 5 d1b9ba_ 6 c3m9yB_ 7 d2btma_ 8 d1mo0a_ 9 c3gvgA_ 10 d1m6ja_ 11 d1kv5a_ 12 d1suxa_ 13 d1n55a_ 14 d1sw3a_ 15 d1o5xa_ 16 d1r2ra_ 17 c3krsB_ 18 d1neya_ 19 c3s6dA_ 20 c3th6B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1trea_ 100.0 100 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 2 d1aw1a_ 100.0 66 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 3 c1yyaA_ 100.0 42 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8 4 c2dp3A_ 100.0 42 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia 5 d1b9ba_ 100.0 43 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 6 c3m9yB_ 100.0 42 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution 7 d2btma_ 100.0 41 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 8 d1mo0a_ 100.0 48 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 9 c3gvgA_ 100.0 42 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from mycobacterium2 tuberculosis 10 d1m6ja_ 100.0 43 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 11 d1kv5a_ 100.0 43 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 12 d1suxa_ 100.0 43 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 13 d1n55a_ 100.0 43 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 14 d1sw3a_ 100.0 46 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 15 d1o5xa_ 100.0 40 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 16 d1r2ra_ 100.0 45 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 17 c3krsB_ 100.0 42 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: structure of triosephosphate isomerase from cryptosporidium parvum at2 1.55a resolution 18 d1neya_ 100.0 45 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 19 c3s6dA_ 100.0 28 PDB header:isomerase Chain: A: PDB Molecule:putative triosephosphate isomerase; PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis 20 c3th6B_ 100.0 46 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from rhipicephalus2 (boophilus) microplus. 21 d1ttja_ not modelled 100.0 42 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 22 c3kxqB_ not modelled 100.0 39 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from bartonella2 henselae at 1.6a resolution 23 c2jgqB_ not modelled 100.0 32 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: kinetics and structural properties of triosephosphate2 isomerase from helicobacter pylori 24 d1hg3a_ not modelled 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 25 d1w0ma_ not modelled 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 26 c2h6rG_ not modelled 100.0 24 PDB header:isomerase Chain: G: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase (tim) from2 methanocaldococcus jannaschii 27 d1rpxa_ not modelled 98.4 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 28 d1tqja_ not modelled 98.2 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 29 d1j5ta_ not modelled 97.8 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 30 c3ct7E_ not modelled 97.7 21 PDB header:isomerase Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase; PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12 31 d1tqxa_ not modelled 97.5 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 32 c3inpA_ not modelled 97.5 16 PDB header:isomerase Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase; PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis. 33 d1qopa_ not modelled 97.5 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 34 c3qc3B_ not modelled 97.4 14 PDB header:isomerase Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase; PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution 35 d1rd5a_ not modelled 97.4 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 36 c3qjaA_ not modelled 97.4 13 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form 37 c2c3zA_ not modelled 97.3 11 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus 38 c3f4wA_ not modelled 97.3 17 PDB header:synthase, lyase Chain: A: PDB Molecule:putative hexulose 6 phosphate synthase; PDBTitle: the 1.65a crystal structure of 3-hexulose-6-phosphate2 synthase from salmonella typhimurium 39 d2flia1 not modelled 97.3 18 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 40 c3ajxA_ not modelled 97.3 20 PDB header:lyase Chain: A: PDB Molecule:3-hexulose-6-phosphate synthase; PDBTitle: crystal structure of 3-hexulose-6-phosphate synthase 41 d1q6oa_ not modelled 97.3 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 42 d1i4na_ not modelled 97.3 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 43 d1vc4a_ not modelled 97.2 11 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 44 c3igsB_ not modelled 97.1 16 PDB header:isomerase Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2; PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase 45 d1h1ya_ not modelled 97.0 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 46 d1a53a_ not modelled 97.0 11 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 47 d1yxya1 not modelled 96.5 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:NanE-like 48 c3q58A_ not modelled 96.3 12 PDB header:isomerase Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase; PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica 49 c3navB_ not modelled 96.3 17 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 50 c3thaB_ not modelled 96.3 20 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. 51 d1wv2a_ not modelled 96.2 18 Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like 52 d1xcfa_ not modelled 96.2 17 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 53 d1piia2 not modelled 95.7 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 54 d1ka9f_ not modelled 95.1 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 55 d1h5ya_ not modelled 94.4 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 56 d1xi3a_ not modelled 93.9 18 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 57 c3tdmD_ not modelled 93.8 17 PDB header:de novo protein Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel PDBTitle: computationally designed tim-barrel protein, halfflr 58 c2ekcA_ not modelled 93.8 23 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 59 c3cu2A_ not modelled 93.7 16 PDB header:isomerase Chain: A: PDB Molecule:ribulose-5-phosphate 3-epimerase; PDBTitle: crystal structure of ribulose-5-phosphate 3-epimerase (yp_718263.1)2 from haemophilus somnus 129pt at 1.91 a resolution 60 d2tpsa_ not modelled 93.7 20 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 61 c2y85D_ not modelled 93.5 17 PDB header:isomerase Chain: D: PDB Molecule:phosphoribosyl isomerase a; PDBTitle: crystal structure of mycobacterium tuberculosis phosphoribosyl2 isomerase with bound rcdrp 62 d1thfd_ not modelled 93.5 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 63 d1jvna1 not modelled 93.4 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 64 d1vzwa1 not modelled 93.3 19 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 65 c3exsB_ not modelled 93.2 12 PDB header:lyase Chain: B: PDB Molecule:rmpd (hexulose-6-phosphate synthase); PDBTitle: crystal structure of kgpdc from streptococcus mutans in2 complex with d-r5p 66 c2bdqA_ not modelled 93.1 17 PDB header:metal transport Chain: A: PDB Molecule:copper homeostasis protein cutc; PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15. 67 d1y0ea_ not modelled 93.0 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:NanE-like 68 c2v82A_ not modelled 93.0 21 PDB header:lyase Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PDBTitle: kdpgal complexed to kdpgal 69 d1xm3a_ not modelled 92.5 18 Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like 70 d1geqa_ not modelled 92.5 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 71 d1wa3a1 not modelled 92.4 23 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 72 c3gkaB_ not modelled 92.1 11 PDB header:oxidoreductase Chain: B: PDB Molecule:n-ethylmaleimide reductase; PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei 73 c2h90A_ not modelled 91.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:xenobiotic reductase a; PDBTitle: xenobiotic reductase a in complex with coumarin 74 c2vwtA_ not modelled 91.7 20 PDB header:lyase Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase; PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex 75 d1dvja_ not modelled 91.3 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 76 c3gr7A_ not modelled 91.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dehydrogenase; PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form 77 d1wbha1 not modelled 90.3 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 78 c3jr2D_ not modelled 90.2 12 PDB header:biosynthetic protein Chain: D: PDB Molecule:hexulose-6-phosphate synthase sgbh; PDBTitle: x-ray crystal structure of the mg-bound 3-keto-l-gulonate-6-phosphate2 decarboxylase from vibrio cholerae o1 biovar el tor str. n16961 79 c3hf3A_ not modelled 89.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:chromate reductase; PDBTitle: old yellow enzyme from thermus scotoductus sa-01 80 d1viza_ not modelled 89.1 22 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 81 c2w6rA_ not modelled 88.9 20 PDB header:lyase Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels 82 d1o4ua1 not modelled 88.7 21 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 83 c1yadD_ not modelled 88.4 10 PDB header:transcription Chain: D: PDB Molecule:regulatory protein teni; PDBTitle: structure of teni from bacillus subtilis 84 d1ojxa_ not modelled 88.2 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 85 d1km4a_ not modelled 88.1 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 86 d1vhna_ not modelled 88.1 17 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 87 d1qo2a_ not modelled 87.9 19 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 88 d2czda1 not modelled 86.9 17 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 89 d2f6ua1 not modelled 86.9 16 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 90 c2wwcA_ not modelled 86.6 11 PDB header:hydrolase Chain: A: PDB Molecule:1,4-beta-n-acetylmuramidase; PDBTitle: 3d-structure of the modular autolysin lytc from2 streptococcus pneumoniae in complex with synthetic3 peptidoglycan ligand 91 d1wkya2 not modelled 86.6 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 92 d1ytda1 not modelled 86.1 14 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 93 c3o63B_ not modelled 85.8 18 PDB header:transferase Chain: B: PDB Molecule:probable thiamine-phosphate pyrophosphorylase; PDBTitle: crystal structure of thiamin phosphate synthase from mycobacterium2 tuberculosis 94 c2gq8A_ not modelled 85.6 27 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, fmn-binding; PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone 95 d1djqa1 not modelled 85.1 14 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 96 d1qapa1 not modelled 84.0 22 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 97 c3kruC_ not modelled 83.9 13 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39 98 d1qpoa1 not modelled 83.4 19 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 99 d1q45a_ not modelled 83.2 14 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 100 c2jbmA_ not modelled 82.6 15 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: qprtase structure from human 101 c2nv2U_ not modelled 80.3 29 PDB header:lyase/transferase Chain: U: PDB Molecule:pyridoxal biosynthesis lyase pdxs; PDBTitle: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus2 subtilis 102 c1djnB_ not modelled 79.7 12 PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) 103 c3femB_ not modelled 79.5 20 PDB header:biosynthetic protein, transferase Chain: B: PDB Molecule:pyridoxine biosynthesis protein snz1; PDBTitle: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from2 saccharomyces cerevisiae 104 c2htmB_ not modelled 79.4 19 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 105 d1znna1 not modelled 79.1 20 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:PdxS-like 106 c2zbtB_ not modelled 78.7 26 PDB header:lyase Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs; PDBTitle: crystal structure of pyridoxine biosynthesis protein from thermus2 thermophilus hb8 107 d1oyaa_ not modelled 78.4 15 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 108 d1gwja_ not modelled 78.2 17 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 109 d1ps9a1 not modelled 77.6 11 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 110 d1vhca_ not modelled 77.4 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 111 c1o4uA_ not modelled 77.1 20 PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution 112 c1wkyA_ not modelled 76.8 14 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-1,4-mannanase; PDBTitle: crystal structure of alkaline mannanase from bacillus sp. strain jamb-2 602: catalytic domain and its carbohydrate binding module 113 c2b7pA_ not modelled 76.3 15 PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori 114 d1mxsa_ not modelled 76.2 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 115 c3tqvA_ not modelled 75.8 12 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: structure of the nicotinate-nucleotide pyrophosphorylase from2 francisella tularensis. 116 c2agkA_ not modelled 75.6 13 PDB header:isomerase Chain: A: PDB Molecule:1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) PDBTitle: structure of s. cerevisiae his6 protein 117 c3l0gD_ not modelled 75.2 14 PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution 118 c1x1oC_ not modelled 75.2 14 PDB header:transferase Chain: C: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of project id tt0268 from thermus thermophilus hb8 119 c3ncoA_ not modelled 75.1 14 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase fncel5a; PDBTitle: crystal structure of fncel5a from f. nodosum rt17-b1 120 c2i14B_ not modelled 74.2 24 PDB header:transferase Chain: B: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide2 pyrophosphorylase from pyrococcus furiosus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0