PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1km4a_

Fold library id	Fold	Superfamily	Family
d1km4a_	TIM beta/alpha-barrel	Ribulose-phoshate binding barrel	Decarboxylase

Links to external resources
Added to library: Tue Mar 16 12:54:34 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V M N R L I L A M D L M N R D D A L R V T G E V R E Y I D T V K I G Y P L V L S E G M D I I A E F R K R F G C R I I A D F A V A D I P E T N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S T T T
S
T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E K I C R A T F K A G A D A I I V H G F P G A D S V R A C L N V A E E M G R E V F L L T E M S H P G A E M F I Q G A A D E I A R M G V D L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S T T
T
S
S S G G G G T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V K N Y V G P S T R P E R L S R L R E I I G Q D S F L I S P G V G A Q G G D P G E T L R F A D A I I V G R S I Y L A D N P A A A A A G I I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S
B S T T S B
T T T
S
T S S S

. .

Sequence S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	M	N	R	L	I	L	A	M	D	L	M	N	R	D	D	A	L	R	V	T	G	E	V	R	E	Y	I	D	T	V	K	I	G	Y	P	L	V	L	S	E	G	M	D	I	I	A	E	F	R	K	R	F	G	C	R	I	I	A	D	F	A	V	A	D	I	P	E	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G								S	S												T	T	T		S														T																						S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	K	I	C	R	A	T	F	K	A	G	A	D	A	I	I	V	H	G	F	P	G	A	D	S	V	R	A	C	L	N	V	A	E	E	M	G	R	E	V	F	L	L	T	E	M	S	H	P	G	A	E	M	F	I	Q	G	A	A	D	E	I	A	R	M	G	V	D	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T		S						S	T	T																T								S		S	S	G	G	G	G	T	T																T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	K	N	Y	V	G	P	S	T	R	P	E	R	L	S	R	L	R	E	I	I	G	Q	D	S	F	L	I	S	P	G	V	G	A	Q	G	G	D	P	G	E	T	L	R	F	A	D	A	I	I	V	G	R	S	I	Y	L	A	D	N	P	A	A	A	A	A	G	I	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T														S	S	S							B	S	T	T	S	B						T	T	T		S										T	S	S	S
	.	.
Sequence	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)