Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	I	R	V	P	D	E	L	P	A	V	N	F	L	R	E	E	N	V	F	V	M	T	T	S	R	A	S	G	Q	E	I	R	P	L	K	V	L	I	L	N	L	M	P	K	K	I	E	T	E	N	Q	F	L	R	L	L	S	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?															?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	P	L	Q	V	D	I	Q	L	L	R	I	D	S	R	E	S	R	N	T	P	A	E	H	L	N	N	F	Y	C	N	F	E	D	I	Q	D	Q	N	F	D	G	L	I	V	T	G	A	P	L	G	L	V	E	F	N	D	V	A	Y
Secondary structure
SS confidence
Disorder															?	?	?	?			?																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		W	P	Q	I	K	Q	V	L	E	W	S	K	D	H	V	T	S	T	L	F	V	C	W	A	V	Q	A	A	L	N	I	L	Y	G	I	P	K	Q	T	R	T	E	K	L	S	G	V	Y	E	H	H	I	L	H	P	H	A	L	L	T
Secondary structure
SS confidence
Disorder																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	G	F	D	D	S	F	L	A	P	H	S	R	Y	A	D	F	P	A	A	L	I	R	D	Y	T	D	L	E	I	L	A	E	T	E	E	G	D	A	Y	L	F	A	S	K	D	K	R	I	A	F	V	T	G	H	P	E	Y	D	A
Secondary structure
SS confidence
Disorder																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	T	L	A	Q	E	F	F	R	D	V	E	A	G	L	D	P	D	V	P	Y	N	Y	F	P	H	N	D	P	Q	N	T	P	R	A	S	W	R	S	H	G	N	L	L	F	T	N	W	L	N	Y	Y	V	Y	Q	I	T	P	Y	D
Secondary structure
SS confidence
Disorder														?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		L	R	H	M	N	P	T	L	D
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2h2w chain A Region: 2 - 297 Aligned: 289 Modelled: 296 Confidence: 100.0% Identity: 51% PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution Phyre2 PDB 2ghr chain A domain 1 Region: 17 - 297 Aligned: 269 Modelled: 267 Confidence: 100.0% Identity: 51% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: HTS-like Phyre2 PDB 3l83 chain A Region: 40 - 289 Aligned: 221 Modelled: 233 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus Phyre2 PDB 1o1y chain A Region: 98 - 293 Aligned: 178 Modelled: 190 Confidence: 99.9% Identity: 13% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 3l7n chain A Region: 36 - 245 Aligned: 184 Modelled: 189 Confidence: 99.9% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c Phyre2 PDB 2vxo chain B Region: 91 - 239 Aligned: 132 Modelled: 149 Confidence: 99.9% Identity: 18% PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp Phyre2 PDB 2ywc chain C Region: 88 - 239 Aligned: 138 Modelled: 145 Confidence: 99.9% Identity: 21% PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp Phyre2 PDB 1wl8 chain A domain 1 Region: 36 - 249 Aligned: 178 Modelled: 187 Confidence: 99.8% Identity: 17% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1gpm chain D Region: 88 - 239 Aligned: 139 Modelled: 152 Confidence: 99.8% Identity: 22% PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate Phyre2 PDB 1gpm chain A domain 2 Region: 31 - 253 Aligned: 193 Modelled: 205 Confidence: 99.8% Identity: 22% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 3uow chain B Region: 90 - 239 Aligned: 132 Modelled: 136 Confidence: 99.8% Identity: 18% PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum Phyre2 PDB 1qdl chain B Region: 91 - 238 Aligned: 140 Modelled: 145 Confidence: 99.8% Identity: 18% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 2a9v chain A domain 1 Region: 98 - 237 Aligned: 129 Modelled: 140 Confidence: 99.8% Identity: 16% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 2vpi chain A Region: 90 - 253 Aligned: 141 Modelled: 148 Confidence: 99.8% Identity: 18% PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain Phyre2 PDB 3r74 chain B Region: 21 - 237 Aligned: 184 Modelled: 195 Confidence: 99.8% Identity: 16% PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 Phyre2 PDB 1i7q chain B Region: 92 - 253 Aligned: 148 Modelled: 158 Confidence: 99.8% Identity: 16% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1i1q chain B Region: 92 - 245 Aligned: 134 Modelled: 154 Confidence: 99.7% Identity: 17% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 3tqi chain B Region: 88 - 239 Aligned: 131 Modelled: 136 Confidence: 99.7% Identity: 18% PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii Phyre2 PDB 1kee chain H Region: 34 - 253 Aligned: 180 Modelled: 194 Confidence: 99.7% Identity: 17% PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin Phyre2 PDB 1a9x chain B domain 2 Region: 34 - 253 Aligned: 180 Modelled: 196 Confidence: 99.7% Identity: 16% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 1 c2h2wA_ 2 d2ghra1 3 c3l83A_ 4 d1o1ya_ 5 c3l7nA_ 6 c2vxoB_ 7 c2ywcC_ 8 d1wl8a1 9 c1gpmD_ 10 d1gpma2 11 c3uowB_ 12 d1qdlb_ 13 d2a9va1 14 c2vpiA_ 15 c3r74B_ 16 d1i7qb_ 17 d1i1qb_ 18 c3tqiB_ 19 c1keeH_ 20 d1a9xb2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2h2wA_ 100.0 51 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 2 d2ghra1 100.0 51 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like 3 c3l83A_ 100.0 14 PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus 4 d1o1ya_ 99.9 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 5 c3l7nA_ 99.9 14 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 6 c2vxoB_ 99.9 18 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp 7 c2ywcC_ 99.9 21 PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp 8 d1wl8a1 99.8 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 9 c1gpmD_ 99.8 22 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 10 d1gpma2 99.8 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 11 c3uowB_ 99.8 18 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 12 d1qdlb_ 99.8 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 13 d2a9va1 99.8 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 14 c2vpiA_ 99.8 18 PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain 15 c3r74B_ 99.8 16 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 16 d1i7qb_ 99.8 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 17 d1i1qb_ 99.7 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 18 c3tqiB_ 99.7 18 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 19 c1keeH_ 99.7 17 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 20 d1a9xb2 99.7 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 21 d2nv0a1 not modelled 99.7 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 22 c3fijD_ not modelled 99.6 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 23 c2issF_ not modelled 99.6 18 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 24 d1jvna2 not modelled 99.6 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 25 c2ywjA_ not modelled 99.6 14 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 26 d2abwa1 not modelled 99.6 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 27 d1k9vf_ not modelled 99.6 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 28 c2ywdA_ not modelled 99.5 16 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of glutamine amidotransferase 29 c2v4uA_ not modelled 99.5 18 PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine 30 d1s1ma1 not modelled 99.5 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 31 d1vcoa1 not modelled 99.5 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 32 c3nvaB_ not modelled 99.5 15 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 33 c1vcnA_ not modelled 99.4 16 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 34 d1q7ra_ not modelled 99.4 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 35 c2w7tA_ not modelled 99.4 15 PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin 36 c2ad5B_ not modelled 99.4 14 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 37 c1l9xA_ not modelled 99.4 14 PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase 38 d1l9xa_ not modelled 99.4 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 39 d1ka9h_ not modelled 99.2 11 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 40 c1jvnB_ not modelled 99.2 17 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 41 c3d54D_ not modelled 99.1 10 PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima 42 d1t3ta2 not modelled 98.8 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 43 c3cneD_ not modelled 95.4 11 PDB header:hydrolase Chain: D: PDB Molecule:putative protease i; PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron 44 c1t3tA_ not modelled 95.3 17 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 45 c3uk7B_ not modelled 95.0 16 PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d 46 c3kklA_ not modelled 94.8 4 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 47 c3l3bA_ not modelled 94.8 23 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 48 d1g2ia_ not modelled 94.2 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 49 d1vhqa_ not modelled 93.8 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 50 c3n7tA_ not modelled 93.7 12 PDB header:protein binding Chain: A: PDB Molecule:macrophage binding protein; PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis 51 c3fseB_ not modelled 92.0 11 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 52 d1sy7a1 not modelled 91.1 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 53 d1qvwa_ not modelled 91.1 5 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 54 c3efeC_ not modelled 90.5 19 PDB header:chaperone Chain: C: PDB Molecule:thij/pfpi family protein; PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis 55 d1n57a_ not modelled 90.2 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 56 c3mgkA_ not modelled 89.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:intracellular protease/amidase related enzyme PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824 57 d1u9ca_ not modelled 89.5 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 58 d1p5fa_ not modelled 89.2 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 59 d1oi4a1 not modelled 88.2 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 60 d2fexa1 not modelled 87.4 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 61 c3f5dA_ not modelled 84.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis 62 d2ab0a1 not modelled 82.4 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 63 c3ot1B_ not modelled 82.3 14 PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein 64 c1sy7B_ not modelled 80.5 12 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase 1; PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution. 65 d1wsaa_ not modelled 79.8 12 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 66 d1o7ja_ not modelled 78.4 11 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 67 c3nxkE_ not modelled 76.0 14 PDB header:hydrolase Chain: E: PDB Molecule:cytoplasmic l-asparaginase; PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni 68 c3ewnA_ not modelled 75.9 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae 69 d1p80a1 not modelled 74.7 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 70 c3er6D_ not modelled 72.7 11 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus 71 d1laue_ not modelled 69.7 19 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 72 d3euga_ not modelled 69.4 18 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 73 c1wnfA_ not modelled 69.1 13 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii 74 d2d6fa2 not modelled 68.7 15 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 75 d2nvwa1 not modelled 68.3 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 76 c3qvjB_ not modelled 68.1 8 PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae 77 c1ofgF_ not modelled 67.9 17 PDB header:oxidoreductase Chain: F: PDB Molecule:glucose-fructose oxidoreductase; PDBTitle: glucose-fructose oxidoreductase 78 c1zq1B_ not modelled 67.0 9 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 79 d1zq1a2 not modelled 65.7 11 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 80 c2zhxG_ not modelled 64.7 11 PDB header:hydrolase/hydrolase inhibitor Chain: G: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor 81 c3nooB_ not modelled 63.8 12 PDB header:lyase Chain: B: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens 82 d1lpbb2 not modelled 63.1 11 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 83 c2d6fA_ not modelled 62.0 15 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 84 c2vrnA_ not modelled 60.5 14 PDB header:hydrolase Chain: A: PDB Molecule:protease i; PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily 85 d2j8xa1 not modelled 59.8 18 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 86 d1etha2 not modelled 58.1 12 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 87 c2booA_ not modelled 57.9 15 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung)2 from deinococcus radiodurans. 88 d1okba_ not modelled 57.3 21 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 89 d1rp1a2 not modelled 56.7 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 90 d4pgaa_ not modelled 56.6 10 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 91 d2hxma1 not modelled 55.4 26 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 92 c3cxmA_ not modelled 54.9 15 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: leishmania naiffi uracil-dna glycosylase in complex with 5-bromouracil 93 c2wltA_ not modelled 54.4 13 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution 94 d1xx4a_ not modelled 51.2 15 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 95 c1p81A_ not modelled 50.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase hpii; PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli 96 d1agxa_ not modelled 50.0 11 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 97 c1hplB_ not modelled 49.7 11 PDB header:hydrolase(carboxylic esterase) Chain: B: PDB Molecule:lipase; PDBTitle: horse pancreatic lipase. the crystal structure at 2.32 angstroms resolution 98 c3tr7A_ not modelled 44.7 25 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: structure of a uracil-dna glycosylase (ung) from coxiella burnetii 99 c3r6hA_ not modelled 44.0 11 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase, echa3; PDBTitle: crystal structure of an enoyl-coa hydratase (echa3) from mycobacterium2 marinum 100 d1nnsa_ not modelled 43.2 8 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 101 d1bu8a2 not modelled 42.7 9 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 102 c3bhnA_ not modelled 42.3 10 PDB header:unknown function Chain: A: PDB Molecule:thij/pfpi domain protein; PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution 103 d1t0ba_ not modelled 40.4 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like 104 d2uz9a1 not modelled 39.8 20 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:SAH/MTA deaminase-like 105 c1h6dL_ not modelled 36.1 17 PDB header:protein translocation Chain: L: PDB Molecule:precursor form of glucose-fructose PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol 106 c1gplA_ not modelled 35.7 9 PDB header:serine esterase Chain: A: PDB Molecule:rp2 lipase; PDBTitle: rp2 lipase 107 c2r47C_ not modelled 35.4 17 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein mth_862; PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus 108 c1zh8B_ not modelled 33.7 18 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution 109 d1gpla2 not modelled 33.5 9 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 110 c2pvsB_ not modelled 33.2 7 PDB header:hydrolase Chain: B: PDB Molecule:pancreatic lipase-related protein 2; PDBTitle: structure of human pancreatic lipase related protein 22 mutant n336q 111 d1hpla2 not modelled 33.1 11 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 112 d1b25a2 not modelled 28.6 27 Fold:Aldehyde ferredoxin oxidoreductase, N-terminal domain Superfamily:Aldehyde ferredoxin oxidoreductase, N-terminal domain Family:Aldehyde ferredoxin oxidoreductase, N-terminal domain 113 d1fsga_ not modelled 28.1 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 114 d2k57a1 not modelled 28.0 19 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:YgdI/YgdR-like 115 d1nni1_ not modelled 28.0 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 116 d1aora2 not modelled 27.4 21 Fold:Aldehyde ferredoxin oxidoreductase, N-terminal domain Superfamily:Aldehyde ferredoxin oxidoreductase, N-terminal domain Family:Aldehyde ferredoxin oxidoreductase, N-terminal domain 117 c1b4nD_ not modelled 26.9 27 PDB header:oxidoreductase Chain: D: PDB Molecule:formaldehyde ferredoxin oxidoreductase; PDBTitle: formaldehyde ferredoxin oxidoreductase from pyrococcus furiosus,2 complexed with glutarate 118 c3rbvA_ not modelled 26.7 11 PDB header:sugar binding protein Chain: A: PDB Molecule:sugar 3-ketoreductase; PDBTitle: crystal structure of kijd10, a 3-ketoreductase from actinomadura2 kijaniata incomplex with nadp 119 c2vlbC_ not modelled 25.7 9 PDB header:lyase Chain: C: PDB Molecule:arylmalonate decarboxylase; PDBTitle: structure of unliganded arylmalonate decarboxylase 120 c3l3sF_ not modelled 25.4 8 PDB header:isomerase Chain: F: PDB Molecule:enoyl-coa hydratase/isomerase family protein; PDBTitle: crystal structure of an enoyl-coa hydrotase/isomerase family2 protein from silicibacter pomeroyi

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0