Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP30131
DateThu Jan 5 11:45:52 GMT 2012
Unique Job IDb05a663a7fb8f3fd

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3tsuA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
Confidence and coverage
Confidence:100.0% Coverage: 86%
646 residues ( 86% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
734 residues ( 98%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDPETFLVQ
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Disorder  ??????





















































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   .........70.........80.........90.........100.........110.........120
Sequence  LYQHCPPLARIDSVEREPFIWSQLPTEFTIRQSTGGTMNTQIVPDAATCPACLAEMNTPG
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?

??






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   .........130.........140.........150.........160.........170.........180
Sequence  ERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVA
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   .........190.........200.........210.........220.........230.........240
Sequence  CPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGKIVAIKGIGGFHLACDARNSNAVATLR
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???????







































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   .........250.........260.........270.........280.........290.........300
Sequence  ARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIVLVDKKYVPELCDDIAPDLNEVGVM
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???
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   .........310.........320.........330.........340.........350.........360
Sequence  LPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQALADLQGIADGFLIHNRDIVQRMD
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   .........370.........380.........390.........400.........410.........420
Sequence  DSVVRESGEMLRRSRGYVPDALALPPGFKNVPPVLCLGADLKNTFCLVRGEQAVLSQHLG
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   .........430.........440.........450.........460.........470.........480
Sequence  DLSDDGIQMQWREALRLMQNIYDFTPQYVVHDAHPGYVSSQWAREMNLPTQTVLHHHAHA
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   .........490.........500.........510.........520.........530.........540
Sequence  AACLAEHQWPLDGGDVIALTLDGIGMGENGALWGGECLRVNYRECEHLGGLPAVALPGGD
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   .........550.........560.........570.........580.........590.........600
Sequence  LAAKQPWRNLLAQCLRFVPEWQNYSETASVQQQNWSVLARAIERGINAPLASSCGRFFDA
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   .........610.........620.........630.........640.........650.........660
Sequence  VAAALGCAPATLSYEGEAACALEALAASCHGVTHPVTMPRVDNQLDLATFWQQWLNWQAP
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?
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   .........670.........680.........690.........700.........710.........720
Sequence  VNQRAWAFHDALAQGFAALMREQATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFP
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   .........730.........740.........750
Sequence  QSLPAGDGGLSLGQGVIAAARWLAGEVQNG
Secondary structure 














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???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3tsu chain A

3D model

Region: 101 - 746
Aligned: 646
Modelled: 646
Confidence: 100.0%
Identity: 98%
PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate

Phyre2

PDB 1k7j chain A

3D model

Region: 189 - 382
Aligned: 192
Modelled: 194
Confidence: 100.0%
Identity: 17%
Fold: YrdC/RibB
Superfamily: YrdC/RibB
Family: YrdC-like

Phyre2

PDB 3en9 chain B

3D model

Region: 394 - 749
Aligned: 275
Modelled: 297
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein

Phyre2

PDB 1hru chain A

3D model

Region: 199 - 372
Aligned: 170
Modelled: 174
Confidence: 100.0%
Identity: 26%
Fold: YrdC/RibB
Superfamily: YrdC/RibB
Family: YrdC-like

Phyre2

PDB 2eqa chain A

3D model

Region: 189 - 456
Aligned: 266
Modelled: 268
Confidence: 100.0%
Identity: 20%
PDB header:rna binding protein
Chain: A: PDB Molecule:hypothetical protein st1526;
PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii

Phyre2

PDB 2ivo chain C

3D model

Region: 394 - 749
Aligned: 274
Modelled: 293
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein

Phyre2

PDB 3eno chain B

3D model

Region: 394 - 749
Aligned: 275
Modelled: 298
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1

Phyre2

PDB 1jcu chain A

3D model

Region: 194 - 380
Aligned: 182
Modelled: 187
Confidence: 100.0%
Identity: 24%
Fold: YrdC/RibB
Superfamily: YrdC/RibB
Family: YrdC-like

Phyre2

PDB 1gxu chain A

3D model

Region: 4 - 91
Aligned: 88
Modelled: 88
Confidence: 99.9%
Identity: 98%
Fold: Ferredoxin-like
Superfamily: Acylphosphatase/BLUF domain-like
Family: Acylphosphatase-like

Phyre2

PDB 2gv1 chain A

3D model

Region: 5 - 91
Aligned: 87
Modelled: 87
Confidence: 99.9%
Identity: 36%
PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: nmr solution structure of the acylphosphatase from2 eschaerichia coli

Phyre2

PDB 2bje chain A

3D model

Region: 7 - 90
Aligned: 83
Modelled: 84
Confidence: 99.9%
Identity: 33%
PDB header:hydrolase
Chain: A: PDB Molecule:acylphosphatase;
PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group

Phyre2

PDB 3br8 chain A

3D model

Region: 7 - 91
Aligned: 84
Modelled: 85
Confidence: 99.9%
Identity: 27%
PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: crystal structure of acylphosphatase from bacillus subtilis

Phyre2

PDB 3l7v chain A

3D model

Region: 199 - 401
Aligned: 195
Modelled: 202
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:putative uncharacterized protein smu.1377c;
PDBTitle: crystal structure of a hypothetical protein smu.1377c from2 streptococcus mutans ua159

Phyre2

PDB 2acy chain A

3D model

Region: 7 - 92
Aligned: 86
Modelled: 86
Confidence: 99.9%
Identity: 31%
Fold: Ferredoxin-like
Superfamily: Acylphosphatase/BLUF domain-like
Family: Acylphosphatase-like

Phyre2

PDB 1urr chain A

3D model

Region: 1 - 91
Aligned: 90
Modelled: 89
Confidence: 99.9%
Identity: 28%
Fold: Ferredoxin-like
Superfamily: Acylphosphatase/BLUF domain-like
Family: Acylphosphatase-like

Phyre2

PDB 1ulr chain A

3D model

Region: 8 - 90
Aligned: 81
Modelled: 83
Confidence: 99.9%
Identity: 37%
Fold: Ferredoxin-like
Superfamily: Acylphosphatase/BLUF domain-like
Family: Acylphosphatase-like

Phyre2

PDB 1w2i chain A

3D model

Region: 5 - 91
Aligned: 85
Modelled: 87
Confidence: 99.9%
Identity: 36%
Fold: Ferredoxin-like
Superfamily: Acylphosphatase/BLUF domain-like
Family: Acylphosphatase-like

Phyre2

PDB 1aps chain A

3D model

Region: 2 - 91
Aligned: 90
Modelled: 90
Confidence: 99.9%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: Acylphosphatase/BLUF domain-like
Family: Acylphosphatase-like

Phyre2

PDB 1hux chain A

3D model

Region: 467 - 741
Aligned: 184
Modelled: 206
Confidence: 98.7%
Identity: 19%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: BadF/BadG/BcrA/BcrD-like

Phyre2

PDB 2ews chain A domain 1

3D model

Region: 456 - 738
Aligned: 205
Modelled: 224
Confidence: 98.2%
Identity: 17%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Fumble-like

Phyre2
1

c3tsuA_
2

d1k7ja_
3

c3en9B_
4

d1hrua_
5

c2eqaA_
6

c2ivoC_
7

c3enoB_
8

d1jcua_
9

d1gxua_
10

c2gv1A_
11

c2bjeA_
12

c3br8A_
13

c3l7vA_
14

d2acya_
15

d1urra_
16

d1ulra_
17

d1w2ia_
18

d1apsa_
19

d1huxa_
20

d2ewsa1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3tsuA_



100.0 98 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
2d1k7ja_



100.0 17 Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
3c3en9B_



100.0 16 PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
4d1hrua_



100.0 26 Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
5c2eqaA_



100.0 20 PDB header:rna binding protein
Chain: A: PDB Molecule:hypothetical protein st1526;
PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii
6c2ivoC_



100.0 18 PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
7c3enoB_



100.0 16 PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
8d1jcua_



100.0 24 Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
9d1gxua_



99.9 98 Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
10c2gv1A_



99.9 36 PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: nmr solution structure of the acylphosphatase from2 eschaerichia coli
11c2bjeA_



99.9 33 PDB header:hydrolase
Chain: A: PDB Molecule:acylphosphatase;
PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group
12c3br8A_



99.9 27 PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: crystal structure of acylphosphatase from bacillus subtilis
13c3l7vA_



99.9 15 PDB header:transcription
Chain: A: PDB Molecule:putative uncharacterized protein smu.1377c;
PDBTitle: crystal structure of a hypothetical protein smu.1377c from2 streptococcus mutans ua159
14d2acya_



99.9 31 Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
15d1urra_



99.9 28 Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
16d1ulra_



99.9 37 Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
17d1w2ia_



99.9 36 Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
18d1apsa_



99.9 24 Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
19d1huxa_



98.7 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
20d2ewsa1



98.2 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
21c3cqyA_



not modelled 95.9 21 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1
22d2p3ra2



not modelled 95.8 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
23c3ifrB_



not modelled 95.4 19 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
24c3hz6A_



not modelled 94.9 18 PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
25c2zf5O_



not modelled 94.8 22 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
26d2gupa2



not modelled 94.8 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
27c3qbwA_



not modelled 94.8 18 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate
28c2dpnB_



not modelled 94.6 22 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
29d1r59o2



not modelled 94.6 23 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
30c2d4wA_



not modelled 94.5 25 PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
31c2cgkB_



not modelled 94.4 22 PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.
32c3g25B_



not modelled 94.4 16 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
33c2aa4B_



not modelled 94.4 24 PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium
34c2v7zA_



not modelled 94.0 19 PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state
35c2e2pA_



not modelled 93.6 15 PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
36c1glbG_



not modelled 93.6 19 PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
37c2nlxA_



not modelled 93.4 23 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
38d2e8aa2



not modelled 93.4 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
39d2ch5a1



not modelled 93.4 9 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
40c2qm1D_



not modelled 93.4 16 PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
41d1bupa2



not modelled 93.2 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
42c2w40C_



not modelled 93.2 16 PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
43c3iucC_



not modelled 92.7 13 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp
44d2i7na2



not modelled 92.6 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
45c1hpmA_



not modelled 92.6 18 PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site
46c3flcX_



not modelled 92.3 23 PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
47c3i8bA_



not modelled 92.3 21 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis
48c3ezwD_



not modelled 92.2 18 PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
49d2i7pa1



not modelled 92.1 23 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
50c3eo3B_



not modelled 92.0 12 PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
51d1okja1



not modelled 91.8 10 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
52c3gbtA_



not modelled 90.9 10 PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
53c3vgkB_



not modelled 90.7 17 PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus
54c2gupA_



not modelled 90.5 10 PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose
55d2a6aa1



not modelled 90.3 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
56c1xupO_



not modelled 90.2 22 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
57c2ch5D_



not modelled 90.1 11 PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
58d2ap1a1



not modelled 89.8 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
59c3r8eA_



not modelled 89.4 7 PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution
60c1sazA_



not modelled 89.1 17 PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
61c1dkgD_



not modelled 89.1 14 PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
62c2v7yA_



not modelled 88.7 9 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state
63c2aklA_



not modelled 88.7 36 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
64c1z6rC_



not modelled 87.9 9 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
65c2ap1A_



not modelled 87.8 22 PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
66d2aa4a2



not modelled 87.6 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
67c1z05A_



not modelled 87.1 8 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
68c2i7pA_



not modelled 87.1 23 PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase 3;
PDBTitle: crystal structure of human pank3 in complex with accoa
69c3smpA_



not modelled 86.4 20 PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase 1;
PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha
70c1okjB_



not modelled 86.2 12 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protease yeaz;
PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma"
71d2hoea2



not modelled 85.1 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
72d1saza2



not modelled 84.6 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
73c3r6mD_



not modelled 84.5 15 PDB header:hydrolase
Chain: D: PDB Molecule:yeaz, resuscitation promoting factor;
PDBTitle: crystal structure of vibrio parahaemolyticus yeaz
74d1jcea2



not modelled 84.5 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
75c3h1qB_



not modelled 84.3 8 PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
76c2hjhB_



not modelled 83.5 15 PDB header:hydrolase
Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2;
PDBTitle: crystal structure of the sir2 deacetylase
77d1weoa_



not modelled 82.9 31 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
78c3jvpA_



not modelled 82.8 21 PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
79c3gg4B_



not modelled 82.7 23 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
80c3d2fC_



not modelled 81.9 13 PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70
81c2a6aB_



not modelled 81.4 15 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protein tm0874;
PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution
82d1dkgd2



not modelled 79.6 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
83c1tuuA_



not modelled 78.9 14 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase crystallized with atpgs
84c1zc6A_



not modelled 76.7 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
85c1jcgA_



not modelled 76.5 14 PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp
86c3p4iA_



not modelled 75.9 12 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from mycobacterium avium
87c2lcqA_



not modelled 75.6 28 PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
88d1zc6a2



not modelled 74.9 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
89c3nw0A_



not modelled 73.6 30 PDB header:metal binding protein
Chain: A: PDB Molecule:non-structural maintenance of chromosomes element 1
PDBTitle: crystal structure of mageg1 and nse1 complex
90d1g99a2



not modelled 73.2 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
91d1xc3a2



not modelled 71.1 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
92c1x3nA_



not modelled 70.5 20 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium
93c2iirJ_



not modelled 69.9 22 PDB header:transferase
Chain: J: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase from a hypothermophile thermotoga maritima
94c3bjiA_



not modelled 69.8 16 PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
95c2hoeA_



not modelled 69.5 17 PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution
96d1z05a2



not modelled 68.9 8 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
97d2akla2



not modelled 66.7 37 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
98c2ctuA_



not modelled 66.0 43 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 483;
PDBTitle: solution structure of zinc finger domain from human zn2 finger protein 483
99d2e1za2



not modelled 65.7 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
100c1xc3A_



not modelled 65.5 16 PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis
101c3jwpA_



not modelled 64.5 13 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein sir2 homologue;
PDBTitle: crystal structure of plasmodium falciparum sir2a (pf13_0152) in2 complex with amp
102c3htvA_



not modelled 64.4 18 PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
103c2jm1A_



not modelled 64.3 23 PDB header:metal binding protein
Chain: A: PDB Molecule:transcriptional regulator atrx;
PDBTitle: structures and chemical shift assignments for the add domain of the2 atrx protein
104c3axtA_



not modelled 64.3 18 PDB header:transferase
Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase
PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine
105c3k35D_



not modelled 62.7 19 PDB header:hydrolase
Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6;
PDBTitle: crystal structure of human sirt6
106c1pbtA_



not modelled 61.3 8 PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima
107d3pmga3



not modelled 60.0 8 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
108d1z6ra3



not modelled 59.5 7 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
109c3ky9B_



not modelled 58.0 20 PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
110c2ct0A_



not modelled 55.6 19 PDB header:gene regulation
Chain: A: PDB Molecule:non-smc element 1 homolog;
PDBTitle: solution structure of the ring domain of the non-smc2 element 1 protein
111d1bg3a4



not modelled 55.0 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
112c2y0fD_



not modelled 54.5 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
113c1wjpA_



not modelled 54.1 20 PDB header:metal binding protein
Chain: A: PDB Molecule:zinc finger protein 295;
PDBTitle: solution structure of zf-c2h2 domains from human zinc2 finger protein 295
114c2khoA_



not modelled 53.0 15 PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
115d2if1a_



not modelled 52.3 15 Fold:eIF1-like
Superfamily:eIF1-like
Family:eIF1-like
116c3khyA_



not modelled 52.1 22 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4
117d1m2ka_



not modelled 51.9 19 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
118d1ma3a_



not modelled 51.8 18 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
119c2y75F_



not modelled 51.0 26 PDB header:transcription
Chain: F: PDB Molecule:hth-type transcriptional regulator cymr;
PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis
120c3q4gA_



not modelled 49.7 28 PDB header:ligase
Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: structure of nad synthetase from vibrio cholerae

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0