PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3cqyA_

Fold library id	PDB Header	Molecule	Title
c3cqyA_	PDB header: transferase	Chain: A: PDB Molecule: anhydro-n-acetylmuramic acid kinase;	PDBTitle: crystal structure of a functionally unknown protein2 (so_1313) from shewanella oneidensis mr-1

Links to external resources
Added to library: Tue Mar 16 13:43:32 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G X N K A Y Y I G L X S G T S X D G V D A V L V D F A G E Q P Q L I G T H T E T I P T H L L K G L Q R L C L P G T D E I N R L G R L D R S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S S S
G G G
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G K L F A L A V N N L L A K T K I A K D E I I A I G S H G Q T V R H X P N L E V G F T L Q I G D P N T I A T E T G I D V I A D F R R K D I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T S S S
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L G G Q G A P L V P A F H Q Q T F A Q V G K K R V I L N I G G I A N I T Y L P G N S E E V L G F D T G P G N T L I D A W V Q Q V K N E S Y D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T
S S
S S S S
S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K N G A W A A S G K T D P Q L L A Q L L S H P Y F S L A Y P K S T G R E L F N Q A W L E Q Q L S A F N Q L N E E D I Q S T L L D L T C H S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S
T
G G G G S
S S
S S S S S T T T
T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A Q D I L K L A Q E G E L F V C G G G A F N A E L X Q R L A A L L P G Y R I D T T S A L G V D P K W A E G I A F A W L A X R Y Q L G L P A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S G G G G
T T G G G G T
T T T T T

. . . . . . . . . 360 . . . . . . . . . 370

Sequence L P A V T G A S R E A I L G G R F S A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	X	N	K	A	Y	Y	I	G	L	X	S	G	T	S	X	D	G	V	D	A	V	L	V	D	F	A	G	E	Q	P	Q	L	I	G	T	H	T	E	T	I	P	T	H	L	L	K	G	L	Q	R	L	C	L	P	G	T	D	E	I	N	R	L	G	R	L	D	R	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T											T	T												S	S	S	S																					G	G	G		T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	K	L	F	A	L	A	V	N	N	L	L	A	K	T	K	I	A	K	D	E	I	I	A	I	G	S	H	G	Q	T	V	R	H	X	P	N	L	E	V	G	F	T	L	Q	I	G	D	P	N	T	I	A	T	E	T	G	I	D	V	I	A	D	F	R	R	K	D	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			G	G	G															T	T	S	S	S							S										S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	G	G	Q	G	A	P	L	V	P	A	F	H	Q	Q	T	F	A	Q	V	G	K	K	R	V	I	L	N	I	G	G	I	A	N	I	T	Y	L	P	G	N	S	E	E	V	L	G	F	D	T	G	P	G	N	T	L	I	D	A	W	V	Q	Q	V	K	N	E	S	Y	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S																	T	T									S	S									S	S	S	S										S	S														S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	N	G	A	W	A	A	S	G	K	T	D	P	Q	L	L	A	Q	L	L	S	H	P	Y	F	S	L	A	Y	P	K	S	T	G	R	E	L	F	N	Q	A	W	L	E	Q	Q	L	S	A	F	N	Q	L	N	E	E	D	I	Q	S	T	L	L	D	L	T	C	H	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G						S												T		G	G	G	G	S		S	S					S	S	S	S	S								T	T	T		T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	Q	D	I	L	K	L	A	Q	E	G	E	L	F	V	C	G	G	G	A	F	N	A	E	L	X	Q	R	L	A	A	L	L	P	G	Y	R	I	D	T	T	S	A	L	G	V	D	P	K	W	A	E	G	I	A	F	A	W	L	A	X	R	Y	Q	L	G	L	P	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S							S	G	G	G	G													T	T						G	G	G	G	T			T	T	T															T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Sequence	L	P	A	V	T	G	A	S	R	E	A	I	L	G	G	R	F	S	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S					S