PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3r6mD_

Fold library id	PDB Header	Molecule	Title
c3r6mD_	PDB header: hydrolase	Chain: D: PDB Molecule: yeaz, resuscitation promoting factor;	PDBTitle: crystal structure of vibrio parahaemolyticus yeaz

Links to external resources
Added to library: Sat Sep 10 12:36:08 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A K I L A I D T A T E N C S V A L L V N D Q V I S R S E V A P R D H T K K V L P M V D E V L K E A G L T L Q D L D A L A F G R G P G S F T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S
S
T T T
T T T
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V R I G I G I A Q G L A F G A E L P M I G V S T L A A M A Q A S Y R L H G A T D V A V A I D A R M S E V Y W A R Y S R Q E N G E W I G V D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E C V I P P A R L A E E A Q A D S K T W T T A G T G W S A Y Q E E L A G L P F N T A D S E V L Y P D S Q D I V I L A K Q E L E K G N T V P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T
T
S
S
S
T T T
B
S

. .

Sequence E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	K	I	L	A	I	D	T	A	T	E	N	C	S	V	A	L	L	V	N	D	Q	V	I	S	R	S	E	V	A	P	R	D	H	T	K	K	V	L	P	M	V	D	E	V	L	K	E	A	G	L	T	L	Q	D	L	D	A	L	A	F	G	R	G	P	G	S	F	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	S									S	S											S																T	T	T			T	T	T		S								S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	R	I	G	I	G	I	A	Q	G	L	A	F	G	A	E	L	P	M	I	G	V	S	T	L	A	A	M	A	Q	A	S	Y	R	L	H	G	A	T	D	V	A	V	A	I	D	A	R	M	S	E	V	Y	W	A	R	Y	S	R	Q	E	N	G	E	W	I	G	V	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T																							S									S	T	T											T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	C	V	I	P	P	A	R	L	A	E	E	A	Q	A	D	S	K	T	W	T	T	A	G	T	G	W	S	A	Y	Q	E	E	L	A	G	L	P	F	N	T	A	D	S	E	V	L	Y	P	D	S	Q	D	I	V	I	L	A	K	Q	E	L	E	K	G	N	T	V	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S												S	T										T		S								S			S															T	T	T			B		S
	.	.
Sequence	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)