Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	G	A	K	E	I	R	S	K	I	A	S	V	Q	N	T	Q	K	I	T	K	A	M	E	M	V	A	A	S	K	M	R	K	S	Q	D	R	M	A	A	S	R	P	Y	A	E	T	M	R	K	V	I	G	H	L	A	H	G	N
Secondary structure
SS confidence
Disorder		?	?	?																																																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	E	Y	K	H	P	Y	L	E	D	R	D	V	K	R	V	G	Y	L	V	V	S	T	D	R	G	L	C	G	G	L	N	I	N	L	F	K	K	L	L	A	E	M	K	T	W	T	D	K	G	V	Q	C	D	L	A	M	I	G	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?																																			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	G	V	S	F	F	N	S	V	G	G	N	V	V	A	Q	V	T	G	M	G	D	N	P	S	L	S	E	L	I	G	P	V	K	V	M	L	Q	A	Y	D	E	G	R	L	D	K	L	Y	I	V	S	N	K	F	I	N	T	M	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	V	P	T	I	S	Q	L	L	P	L	P	A	S	D	D	D	D	L	K	H	K	S	W	D	Y	L	Y	E	P	D	P	K	A	L	L	D	T	L	L	R	R	Y	V	E	S	Q	V	Y	Q	G	V	V	E	N	L	A	S	E	Q
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Sequence		A	A	R	M	V	A	M	K	A	A	T	D	N	G	G	S	L	I	K	E	L	Q	L	V	Y	N	K	A	R	Q	A	S	I	T	Q	E	L	T	E	I	V	S	G	A	A	A	V
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3oaa chain O Region: 2 - 285 Aligned: 284 Modelled: 284 Confidence: 100.0% Identity: 100% PDB header:hydrolase/transport protein Chain: O: PDB Molecule:atp synthase gamma chain; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon Phyre2 PDB 2xok chain G Region: 2 - 286 Aligned: 263 Modelled: 270 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: refined structure of yeast f1c10 atpase complex to 3 a2 resolution Phyre2 PDB 1fs0 chain G Region: 19 - 248 Aligned: 219 Modelled: 230 Confidence: 100.0% Identity: 99% Fold: Pyruvate kinase C-terminal domain-like Superfamily: ATP synthase (F1-ATPase), gamma subunit Family: ATP synthase (F1-ATPase), gamma subunit Phyre2 PDB 2jdi chain G domain 1 Region: 2 - 287 Aligned: 183 Modelled: 200 Confidence: 100.0% Identity: 39% Fold: Pyruvate kinase C-terminal domain-like Superfamily: ATP synthase (F1-ATPase), gamma subunit Family: ATP synthase (F1-ATPase), gamma subunit Phyre2 PDB 2qe7 chain G Region: 3 - 268 Aligned: 227 Modelled: 241 Confidence: 100.0% Identity: 42% PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 Phyre2 PDB 2w6j chain G Region: 2 - 285 Aligned: 181 Modelled: 201 Confidence: 100.0% Identity: 41% PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5. Phyre2 PDB 3fks chain Y Region: 2 - 286 Aligned: 187 Modelled: 200 Confidence: 100.0% Identity: 32% PDB header:hydrolase Chain: Y: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: yeast f1 atpase in the absence of bound nucleotides Phyre2 PDB 1mab chain G Region: 5 - 287 Aligned: 123 Modelled: 123 Confidence: 100.0% Identity: 51% Fold: Pyruvate kinase C-terminal domain-like Superfamily: ATP synthase (F1-ATPase), gamma subunit Family: ATP synthase (F1-ATPase), gamma subunit Phyre2 PDB 3re1 chain B Region: 78 - 134 Aligned: 48 Modelled: 57 Confidence: 75.0% Identity: 8% PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthetase; PDBTitle: crystal structure of uroporphyrinogen iii synthase from pseudomonas2 syringae pv. tomato dc3000 Phyre2 PDB 1wd7 chain A Region: 78 - 142 Aligned: 60 Modelled: 65 Confidence: 61.9% Identity: 18% Fold: HemD-like Superfamily: HemD-like Family: HemD-like Phyre2 PDB 3mw8 chain A Region: 78 - 135 Aligned: 46 Modelled: 58 Confidence: 61.7% Identity: 9% PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: crystal structure of an uroporphyrinogen-iii synthase (sama_3255) from2 shewanella amazonensis sb2b at 1.65 a resolution Phyre2 PDB 3d8t chain B Region: 78 - 142 Aligned: 60 Modelled: 65 Confidence: 60.4% Identity: 15% PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: thermus thermophilus uroporphyrinogen iii synthase Phyre2 PDB 2qzu chain A Region: 33 - 92 Aligned: 52 Modelled: 60 Confidence: 59.4% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 Phyre2 PDB 1fsu chain A Region: 37 - 90 Aligned: 46 Modelled: 54 Confidence: 54.0% Identity: 15% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 3b5q chain B Region: 34 - 90 Aligned: 49 Modelled: 55 Confidence: 54.0% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution Phyre2 PDB 1hdh chain A Region: 33 - 92 Aligned: 52 Modelled: 60 Confidence: 49.2% Identity: 27% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 2xr9 chain A Region: 41 - 87 Aligned: 39 Modelled: 47 Confidence: 46.8% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) Phyre2 PDB 2kil chain A Region: 29 - 102 Aligned: 73 Modelled: 74 Confidence: 44.1% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: nmr structure of the h103g mutant so2144 h-nox domain from2 shewanella oneidensis in the fe(ii)co ligation state Phyre2 PDB 1qw2 chain A Region: 72 - 99 Aligned: 28 Modelled: 28 Confidence: 43.7% Identity: 29% Fold: Hypothetical protein Ta1206 Superfamily: Hypothetical protein Ta1206 Family: Hypothetical protein Ta1206 Phyre2 PDB 3k8v chain B Region: 233 - 279 Aligned: 47 Modelled: 47 Confidence: 42.9% Identity: 13% PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c20 Phyre2 1 c3oaaO_ 2 c2xokG_ 3 d1fs0g_ 4 d2jdig1 5 c2qe7G_ 6 c2w6jG_ 7 c3fksY_ 8 d1mabg_ 9 c3re1B_ 10 d1wd7a_ 11 c3mw8A_ 12 c3d8tB_ 13 c2qzuA_ 14 d1fsua_ 15 c3b5qB_ 16 d1hdha_ 17 c2xr9A_ 18 c2kilA_ 19 d1qw2a_ 20 c3k8vB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3oaaO_ 100.0 100 PDB header:hydrolase/transport protein Chain: O: PDB Molecule:atp synthase gamma chain; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon 2 c2xokG_ 100.0 24 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: refined structure of yeast f1c10 atpase complex to 3 a2 resolution 3 d1fs0g_ 100.0 99 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 4 d2jdig1 100.0 39 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 5 c2qe7G_ 100.0 42 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 6 c2w6jG_ 100.0 41 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5. 7 c3fksY_ 100.0 32 PDB header:hydrolase Chain: Y: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: yeast f1 atpase in the absence of bound nucleotides 8 d1mabg_ 100.0 51 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 9 c3re1B_ 75.0 8 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthetase; PDBTitle: crystal structure of uroporphyrinogen iii synthase from pseudomonas2 syringae pv. tomato dc3000 10 d1wd7a_ 61.9 18 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 11 c3mw8A_ 61.7 9 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: crystal structure of an uroporphyrinogen-iii synthase (sama_3255) from2 shewanella amazonensis sb2b at 1.65 a resolution 12 c3d8tB_ 60.4 15 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: thermus thermophilus uroporphyrinogen iii synthase 13 c2qzuA_ 59.4 13 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 14 d1fsua_ 54.0 15 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 15 c3b5qB_ 54.0 18 PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution 16 d1hdha_ 49.2 27 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 17 c2xr9A_ 46.8 21 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) 18 c2kilA_ 44.1 15 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: nmr structure of the h103g mutant so2144 h-nox domain from2 shewanella oneidensis in the fe(ii)co ligation state 19 d1qw2a_ 43.7 29 Fold:Hypothetical protein Ta1206 Superfamily:Hypothetical protein Ta1206 Family:Hypothetical protein Ta1206 20 c3k8vB_ 42.9 13 PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c20 21 c2xrgA_ not modelled 41.8 21 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor 22 d1auka_ not modelled 39.0 11 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 23 d1p49a_ not modelled 37.2 17 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 24 c3p9zA_ not modelled 36.5 15 PDB header:ligase Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd); PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695 25 c2zktB_ not modelled 33.9 14 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 26 c3ed4A_ not modelled 32.3 10 PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli 27 c2p1lF_ not modelled 32.0 39 PDB header:apoptosis Chain: F: PDB Molecule:beclin 1; PDBTitle: structure of the bcl-xl:beclin 1 complex 28 c2w8dB_ not modelled 27.6 11 PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis 29 c3q3qA_ not modelled 27.5 15 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 30 d2pk8a1 not modelled 26.8 14 Fold:Hypothetical protein PF0899 Superfamily:Hypothetical protein PF0899 Family:Hypothetical protein PF0899 31 c2vqrA_ not modelled 25.9 16 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily 32 c3dvuC_ not modelled 24.7 39 PDB header:viral protein/apoptosis Chain: C: PDB Molecule:beclin-1; PDBTitle: crystal structure of the complex of murine gamma-2 herpesvirus 68 bcl-2 homolog m11 and the beclin 1 bh33 domain 33 d1sfea2 not modelled 24.2 42 Fold:Ribonuclease H-like motif Superfamily:Methylated DNA-protein cysteine methyltransferase domain Family:Methylated DNA-protein cysteine methyltransferase domain 34 c1o98A_ not modelled 24.2 15 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 35 c2i09A_ not modelled 23.8 12 PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans 36 c3lzcA_ not modelled 23.8 23 PDB header:biosynthetic protein Chain: A: PDB Molecule:dph2; PDBTitle: crystal structure of dph2 from pyrococcus horikoshii 37 d2fefa1 not modelled 22.6 32 Fold:Bromodomain-like Superfamily:PA2201 N-terminal domain-like Family:PA2201 N-terminal domain-like 38 c2w5tA_ not modelled 22.6 13 PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. 39 c3lxqB_ not modelled 22.4 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a 40 c2iucB_ not modelled 19.7 13 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 41 d1o98a2 not modelled 18.2 15 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain 42 c3m8yC_ not modelled 17.6 10 PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation 43 c2ponA_ not modelled 17.3 39 PDB header:apoptosis inhibitor Chain: A: PDB Molecule:beclin-1; PDBTitle: solution structure of the bcl-xl/beclin-1 complex 44 d1tlla2 not modelled 17.1 22 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 45 c3o3xA_ not modelled 16.4 34 PDB header:viral protein Chain: A: PDB Molecule:gp41-5; PDBTitle: crystal structure of gp41-5, a single-chain 5-helix-bundle based on2 hiv gp41 46 d1kxpd3 not modelled 16.2 21 Fold:Serum albumin-like Superfamily:Serum albumin-like Family:Serum albumin-like 47 d1ewsa_ not modelled 14.7 50 Fold:Defensin-like Superfamily:Defensin-like Family:Defensin 48 c3cseA_ not modelled 14.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase; PDBTitle: candida glabrata dihydrofolate reductase complexed with2 nadph and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-3 ynyl)-6-ethylpyrimidine (ucp120b) 49 c3cu2A_ not modelled 14.4 9 PDB header:isomerase Chain: A: PDB Molecule:ribulose-5-phosphate 3-epimerase; PDBTitle: crystal structure of ribulose-5-phosphate 3-epimerase (yp_718263.1)2 from haemophilus somnus 129pt at 1.91 a resolution 50 d2i09a1 not modelled 13.9 13 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:DeoB catalytic domain-like 51 d1u55a_ not modelled 13.7 14 Fold:Ligand-binding domain in the NO signalling and Golgi transport Superfamily:Ligand-binding domain in the NO signalling and Golgi transport Family:H-NOX domain 52 d1q77a_ not modelled 13.3 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 53 c2dg2D_ not modelled 13.0 10 PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein 54 c2k2dA_ not modelled 12.9 25 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c 55 c2o0cB_ not modelled 12.4 15 PDB header:signaling protein Chain: B: PDB Molecule:alr2278 protein; PDBTitle: crystal structure of the h-nox domain from nostoc sp. pcc 71202 complexed to no 56 d2gqfa1 not modelled 10.5 57 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:HI0933 N-terminal domain-like 57 c3lmaC_ not modelled 10.1 15 PDB header:membrane protein Chain: C: PDB Molecule:stage v sporulation protein ad (spovad); PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6. 58 c1jr2A_ not modelled 10.0 18 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 59 d1jr2a_ not modelled 10.0 18 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 60 c3k8wA_ not modelled 9.9 13 PDB header:structural protein Chain: A: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c45 61 d2z06a1 not modelled 9.9 29 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TTHA0625-like 62 d1h3ob_ not modelled 9.7 15 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 63 d1v10a3 not modelled 9.3 40 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 64 c1hucC_ not modelled 9.3 57 PDB header:thiol protease Chain: C: PDB Molecule:cathepsin b; PDBTitle: the refined 2.15 angstroms x-ray crystal structure of human2 liver cathepsin b: the structural basis for its specificity 65 d1yf2a2 not modelled 8.8 13 Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:Type I restriction modification DNA specificity domain 66 d1m2da_ not modelled 8.8 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioredoxin-like 2Fe-2S ferredoxin 67 d1jeya2 not modelled 8.7 10 Fold:vWA-like Superfamily:vWA-like Family:Ku70 subunit N-terminal domain 68 c3opyG_ not modelled 8.6 15 PDB header:transferase Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 69 c1skhA_ not modelled 8.4 67 PDB header:unknown function Chain: A: PDB Molecule:major prion protein 2; PDBTitle: n-terminal (1-30) of bovine prion protein 70 c2yruA_ not modelled 8.4 8 PDB header:apoptosis Chain: A: PDB Molecule:steroid receptor rna activator 1; PDBTitle: solution structure of mouse steroid receptor rna activator2 1 (sra1) protein 71 c3mxzA_ not modelled 8.2 21 PDB header:chaperone Chain: A: PDB Molecule:tubulin-specific chaperone a; PDBTitle: crystal structure of tubulin folding cofactor a from arabidopsis2 thaliana 72 c3opyH_ not modelled 8.2 18 PDB header:transferase Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 73 c3opyB_ not modelled 8.2 18 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 74 c2bpoA_ not modelled 8.1 12 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 75 c3igzB_ not modelled 8.0 18 PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration 76 c2ohcB_ not modelled 7.9 38 PDB header:hydrolase Chain: B: PDB Molecule:trna-splicing endonuclease; PDBTitle: structural and mutational analysis of trna-intron splicing2 endonuclease from thermoplasma acidophilum dsm1728 77 c2cseW_ not modelled 7.7 45 PDB header:virus Chain: W: PDB Molecule:major core protein lambda 1; PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution 78 c3k1qB_ not modelled 7.5 36 PDB header:virus Chain: B: PDB Molecule:vp3a, the building block protein of inner shell; PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics 79 c1ew2A_ not modelled 7.4 4 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase; PDBTitle: crystal structure of a human phosphatase 80 d1zeda1 not modelled 7.4 4 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 81 c3d33B_ not modelled 7.3 27 PDB header:unknown function Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution 82 c2oipE_ not modelled 7.0 14 PDB header:transferase, oxidoreductase Chain: E: PDB Molecule:chain a, crystal structure of dhfr; PDBTitle: crystal structure of the s290g active site mutant of ts-2 dhfr from cryptosporidium hominis 83 c1ihqA_ not modelled 7.0 33 PDB header:de novo protein Chain: A: PDB Molecule:chimeric peptide glytm1bzip: tropomyosin alpha PDBTitle: glytm1bzip: a chimeric peptide model of the n-terminus of a2 rat short alpha tropomyosin with the n-terminus encoded by3 exon 1b 84 c2i6sA_ not modelled 7.0 8 PDB header:hydrolase Chain: A: PDB Molecule:complement c2a fragment; PDBTitle: complement component c2a 85 c3k1qC_ not modelled 6.9 36 PDB header:virus Chain: C: PDB Molecule:vp3b, the building block protein of inner shell; PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics 86 c3n39D_ not modelled 6.7 9 PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi 87 d1y6va1 not modelled 6.5 12 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 88 d1t70a_ not modelled 6.5 29 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DR1281-like 89 d1fpza_ not modelled 6.5 14 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 90 d1ucua_ not modelled 6.5 21 Fold:Phase 1 flagellin Superfamily:Phase 1 flagellin Family:Phase 1 flagellin 91 c1jpeA_ not modelled 6.0 43 PDB header:electron transport Chain: A: PDB Molecule:dsbd-alpha; PDBTitle: crystal structure of dsbd-alpha; the n-terminal domain of2 dsbd 92 d1l6pa_ not modelled 6.0 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Family:Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) 93 c3rg9A_ not modelled 5.9 16 PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate synthase; PDBTitle: trypanosoma brucei dihydrofolate reductase (tbdhfr) in complex with2 wr99210 94 d1c0aa2 not modelled 5.8 13 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 95 c2fo1D_ not modelled 5.8 18 PDB header:gene regulation/signalling protein/dna Chain: D: PDB Molecule:protein lag-3; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna 96 d2fo1d1 not modelled 5.8 18 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Lag-3 N-terminal region Family:Lag-3 N-terminal region 97 d1xo1a2 not modelled 5.8 22 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 98 c2j63B_ not modelled 5.7 43 PDB header:lyase Chain: B: PDB Molecule:ap-endonuclease; PDBTitle: crystal structure of ap endonuclease lmap from leishmania2 major 99 c2kxoA_ not modelled 5.7 12 PDB header:cell cycle Chain: A: PDB Molecule:cell division topological specificity factor; PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0