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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2cseW_

Fold library idPDB HeaderMoleculeTitle
c2cseW_PDB header: virusChain: W: PDB Molecule: major core protein lambda 1;PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution


Added to library: Tue Mar 16 14:24:48 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKRIPRKTKGKSPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSE
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Known secondary structure (DSSP)





SSS







SS








SS
TS





TT
B
SSS
B
S



 .........80.........90.........100.........110.........120.........130.........140
Sequence AKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPA
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Known secondary structure (DSSP) T
SS
SSBSSS
SS

TT




TTB
TTS
BTTS
S
SS


 .........150.........160.........170.........180.........190.........200.........210
Sequence YQCHVCSAVLFSPLDLDAHVASHGLHGNEIQRHITEFISSWQNHPIVQVSADVENKKTAQLLHADTPRLV
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Known secondary structure (DSSP)



SSS



STTSTTT

TTTT
SS



S


SSSS
TT
S

SS

S





 .........220.........230.........240.........250.........260.........270.........280
Sequence TWDAGLCTSFKIVPIVPAQVPQDVLAYTFFTSSYAIQSPFPEAAVSRIVVHTRWASNVDFDRDSSVIMAP
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Known secondary structure (DSSP)

S









S

TT


SS



SSTT

BSS









 .........290.........300.........310.........320.........330.........340.........350
Sequence PTENNIHLFKQLLNTETLSVRGANPLMFRANVLHMLLEFVLDNLYLNRHTGFSQDHTPFTEGANLRSLPG
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Known secondary structure (DSSP) TTS
GGGGG
SSS
TT
S
SS


STTST

B




STTTT

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence PDAEKWYSIMYPTRMGTPNVSKICNFVASCVRNRVGRFDRAQMMNGAMSEWVDVFETSDALTVSIRGRWM
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Known secondary structure (DSSP) S

GGGG


S
STTS
TTS
S


S
BSSSSBS

T
 .........430.........440.........450.........460.........470.........480.........490
Sequence ARLARMNINPTEIEWALTECAQGYVTVTSPYAPSVNRLMPYRISNAERQISQIIRIMNIGNNATVIQPVL
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Known secondary structure (DSSP) S


TTTS





S
B






SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence QDISVLLQRISPLQIDPTIISNTMSTLSPASSILGKLRPSNSDFSSFRVALAGWLYNGVVTTVIDDSSYP
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Known secondary structure (DSSP) T



T


SSS
TT



TTTSTT
TTSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KDGGSVTSLENLWDFFILALALPLTTDPCAPVKAFMTLANMMVGFETIPMDNQIYTQSRRASAFSTPHTW
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Known secondary structure (DSSP) GGG

TT
GGGS

TTTTS




SSSSS
S
S
GGG

STT

 .........640.........650.........660.........670.........680.........690.........700
Sequence PRCFMNIQLISPIDAPILRQWAEIIHRYWPNPSQIRYGAPNVFGSANLFTPPEVLLLPIDHQPANVTTPT
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Known secondary structure (DSSP)

GGGS
SSS
S





S
TTTT



SSS
TT

SS





TT

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence LDFTNELTNWRARVCELMKNLVDNQRYQPGWTQSLVSSMRGTLDKLKLIKSMTPMYLQQLAPVELAVIAP
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Known secondary structure (DSSP) S
TTSTTS
TT

S

S
TT



TTTTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence MLPFPPFQVPYVRLDRDRVPTMVGVTRQSRDTITQPALSLSTTNTTVGVPLALDARAITVALLSGKYPPD
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Known secondary structure (DSSP) T
SS







SS
SSS


S
TT







GGGG
SSS


SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence LVTNVWYADAIYPMYADTEVFSNLQRDMITCEAVQTLVTLVAQISETQYPVDRYLDWIPSLRASAATAAT
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Known secondary structure (DSSP)

S
TTS







S
TTS





 .........920.........930.........940.........950.........960.........970.........980
Sequence FAEWVNTSMKTAFDLSDMLLEPLLSGDPRMTQLAIQYQQYNGRTFNVIPEMPGSVIADCVQLTAEVFNHE
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Known secondary structure (DSSP) SS

S
SSSGGGSS



S


TTS







TTSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence YNLFGIARGDIIIGRVQSTHLWSPLAPPPDLVFDRDTPGVHIFGRDCRISFGMNGAAPMIRDETGMMVPF
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Known secondary structure (DSSP) TGGGTS







SSS

TTS


SSSTT


S







TT




B
TTS
B

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence EGNWIFPLALWQMNTRYFNQQFDAWIKTGELRIRIEMGAYPYMLHYYDPRQYANAWNLTSAWLEEITPTS
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Known secondary structure (DSSP)
S

TTSS



S
TTS
T

SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence IPSVPFMVPISSDHDISSAPAVQYIISTEYNDRSLFCTNSSSPQTIAGPDKHIPVERYNILTNPDAPPTQ
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Known secondary structure (DSSP)





SS







SS

TTSB

SSTTSS


SS





SSSS
TTS
SS
 .........1200.........1210.........1220.
Sequence IQLPEVVDLYNVVTRYAYETPPITAVVMGVP
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Known secondary structure (DSSP)

TTT


S

B






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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