PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3mw8A_

Fold library id	PDB Header	Molecule	Title
c3mw8A_	PDB header: lyase	Chain: A: PDB Molecule: uroporphyrinogen-iii synthase;	PDBTitle: crystal structure of an uroporphyrinogen-iii synthase (sama_3255) from2 shewanella amazonensis sb2b at 1.65 a resolution

Links to external resources
Added to library: Sun Aug 29 08:46:04 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G X K L L L T R P E G K N A A X A S A L D A L A I P Y L V E P L L S V E A A A V T Q A Q L D E L S R A D I L I F I S T S A V S F A T P W L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T
S
T T
S
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D Q W P K A T Y Y A V G D A T A D A L A L Q G I T A E R S P Q A T E G L L T L P S L E Q V S G K Q I V I V R G K G G R E A X A D G L R L R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S S T T
G G G G G G
G G G T
T T
S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A N V S Y L E V Y Q R A C P P L D A P A S V S R W Q S F G I D T I V V T S G E V L E N L I N L V P K D S F A W L R D C H I I V P S A R V E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
G G G S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . .

Sequence Q A R K K G L R R V T N A G A A N Q A A V L D A L G X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S S T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	X	K	L	L	L	T	R	P	E	G	K	N	A	A	X	A	S	A	L	D	A	L	A	I	P	Y	L	V	E	P	L	L	S	V	E	A	A	A	V	T	Q	A	Q	L	D	E	L	S	R	A	D	I	L	I	F	I	S	T	S	A	V	S	F	A	T	P	W	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		T	T	S												T								S																	T	T		S						S												T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	Q	W	P	K	A	T	Y	Y	A	V	G	D	A	T	A	D	A	L	A	L	Q	G	I	T	A	E	R	S	P	Q	A	T	E	G	L	L	T	L	P	S	L	E	Q	V	S	G	K	Q	I	V	I	V	R	G	K	G	G	R	E	A	X	A	D	G	L	R	L	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T				S	S					S	S										T	T										G	G	G	G	G	G		G	G	G	T			T	T									S	S	S											T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	N	V	S	Y	L	E	V	Y	Q	R	A	C	P	P	L	D	A	P	A	S	V	S	R	W	Q	S	F	G	I	D	T	I	V	V	T	S	G	E	V	L	E	N	L	I	N	L	V	P	K	D	S	F	A	W	L	R	D	C	H	I	I	V	P	S	A	R	V	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T								S											S		G	G	G							S					S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence	Q	A	R	K	K	G	L	R	R	V	T	N	A	G	A	A	N	Q	A	A	V	L	D	A	L	G	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T								S	S	S	S									T