Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	N	I	M	N	N	P	V	I	G	V	V	M	C	R	N	R	L	K	G	H	A	T	Q	T	L	Q	E	K	Y	L	N	A	I	I	H	A	G	G	L	P	I	A	L	P	H	A	L	A	E	P	S	L	L	E	Q	L	L	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	L	D	G	I	Y	L	P	G	S	P	S	N	V	Q	P	H	L	Y	G	E	N	G	D	E	P	D	A	D	P	G	R	D	L	L	S	M	A	I	I	N	A	A	L	E	R	R	I	P	I	F	A	I	C	R	G	L	Q	E	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	V	A	T	G	G	S	L	H	R	K	L	C	E	Q	P	E	L	L	E	H	R	E	D	P	E	L	P	V	E	Q	Q	Y	A	P	S	H	E	V	Q	V	E	E	G	G	L	L	S	A	L	L	P	E	C	S	N	F	W	V	N
Secondary structure
SS confidence
Disorder															?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	L	H	G	Q	G	A	K	V	V	S	P	R	L	R	V	E	A	R	S	P	D	G	L	V	E	A	V	S	V	I	N	H	P	F	A	L	G	V	Q	W	H	P	E	W	N	S	S	E	Y	A	L	S	R	I	L	F	E	G	F
Secondary structure
SS confidence
Disorder																																																	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.
Sequence		I	T	A	C	Q	H	H	I	A	E	K	Q	R	L
Secondary structure
SS confidence
Disorder											?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3fij chain D Region: 6 - 246 Aligned: 219 Modelled: 236 Confidence: 100.0% Identity: 38% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 Phyre2 PDB 1l9x chain A Region: 5 - 247 Aligned: 233 Modelled: 243 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase Phyre2 PDB 1l9x chain A Region: 5 - 247 Aligned: 233 Modelled: 243 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 2v4u chain A Region: 5 - 251 Aligned: 223 Modelled: 230 Confidence: 100.0% Identity: 21% PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine Phyre2 PDB 1s1m chain A domain 1 Region: 5 - 251 Aligned: 223 Modelled: 230 Confidence: 100.0% Identity: 25% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 2ad5 chain B Region: 2 - 253 Aligned: 228 Modelled: 235 Confidence: 100.0% Identity: 23% PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. Phyre2 PDB 3nva chain B Region: 9 - 244 Aligned: 212 Modelled: 231 Confidence: 100.0% Identity: 24% PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus Phyre2 PDB 1vcn chain A Region: 9 - 248 Aligned: 209 Modelled: 221 Confidence: 100.0% Identity: 26% PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion Phyre2 PDB 1vco chain A domain 1 Region: 9 - 248 Aligned: 217 Modelled: 223 Confidence: 100.0% Identity: 24% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 2w7t chain A Region: 9 - 247 Aligned: 216 Modelled: 222 Confidence: 100.0% Identity: 21% PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin Phyre2 PDB 2a9v chain A domain 1 Region: 5 - 253 Aligned: 196 Modelled: 215 Confidence: 100.0% Identity: 20% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1gpm chain D Region: 3 - 244 Aligned: 193 Modelled: 207 Confidence: 100.0% Identity: 18% PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate Phyre2 PDB 1gpm chain A domain 2 Region: 3 - 242 Aligned: 191 Modelled: 205 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 3d54 chain D Region: 6 - 245 Aligned: 201 Modelled: 218 Confidence: 100.0% Identity: 18% PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima Phyre2 PDB 2ywc chain C Region: 10 - 245 Aligned: 184 Modelled: 201 Confidence: 100.0% Identity: 22% PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp Phyre2 PDB 1wl8 chain A domain 1 Region: 9 - 246 Aligned: 185 Modelled: 203 Confidence: 100.0% Identity: 22% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1qdl chain B Region: 8 - 243 Aligned: 192 Modelled: 205 Confidence: 100.0% Identity: 20% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1a9x chain B domain 2 Region: 30 - 250 Aligned: 173 Modelled: 188 Confidence: 100.0% Identity: 27% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 PDB 1kee chain H Region: 30 - 249 Aligned: 172 Modelled: 178 Confidence: 100.0% Identity: 27% PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin Phyre2 PDB 1i7q chain B Region: 9 - 245 Aligned: 188 Modelled: 203 Confidence: 100.0% Identity: 20% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Class I glutamine amidotransferases (GAT) Phyre2 1 c3fijD_ 2 c1l9xA_ 3 d1l9xa_ 4 c2v4uA_ 5 d1s1ma1 6 c2ad5B_ 7 c3nvaB_ 8 c1vcnA_ 9 d1vcoa1 10 c2w7tA_ 11 d2a9va1 12 c1gpmD_ 13 d1gpma2 14 c3d54D_ 15 c2ywcC_ 16 d1wl8a1 17 d1qdlb_ 18 d1a9xb2 19 c1keeH_ 20 d1i7qb_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3fijD_ 100.0 38 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 2 c1l9xA_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase 3 d1l9xa_ 100.0 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 4 c2v4uA_ 100.0 21 PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine 5 d1s1ma1 100.0 25 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 6 c2ad5B_ 100.0 23 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 7 c3nvaB_ 100.0 24 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 8 c1vcnA_ 100.0 26 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 9 d1vcoa1 100.0 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 10 c2w7tA_ 100.0 21 PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin 11 d2a9va1 100.0 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 12 c1gpmD_ 100.0 18 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 13 d1gpma2 100.0 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 14 c3d54D_ 100.0 18 PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima 15 c2ywcC_ 100.0 22 PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp 16 d1wl8a1 100.0 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 17 d1qdlb_ 100.0 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 18 d1a9xb2 100.0 27 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 19 c1keeH_ 100.0 27 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 20 d1i7qb_ 100.0 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 21 c2vxoB_ not modelled 100.0 20 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp 22 d1q7ra_ not modelled 100.0 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 23 c3tqiB_ not modelled 100.0 21 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 24 d1i1qb_ not modelled 100.0 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 25 c2vpiA_ not modelled 100.0 21 PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain 26 d2nv0a1 not modelled 100.0 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 27 c3uowB_ not modelled 100.0 19 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 28 c2ywdA_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of glutamine amidotransferase 29 d1jvna2 not modelled 100.0 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 30 c2ywjA_ not modelled 99.9 17 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 31 d2abwa1 not modelled 99.9 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 32 c2issF_ not modelled 99.9 20 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 33 d1k9vf_ not modelled 99.9 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 34 c1jvnB_ not modelled 99.9 23 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 35 d1ka9h_ not modelled 99.9 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 36 c3l7nA_ not modelled 99.9 18 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 37 c3r74B_ not modelled 99.9 16 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 38 c3l83A_ not modelled 99.9 17 PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus 39 d1t3ta2 not modelled 99.9 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 40 d1o1ya_ not modelled 99.9 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 41 d2ghra1 not modelled 99.7 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like 42 c2h2wA_ not modelled 99.7 20 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 43 c1t3tA_ not modelled 98.9 17 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 44 c3l4eA_ not modelled 98.0 16 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 45 c1sy7B_ not modelled 97.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase 1; PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution. 46 c3uk7B_ not modelled 97.0 21 PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d 47 d1sy7a1 not modelled 96.9 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 48 d1p80a1 not modelled 96.9 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 49 d1fyea_ not modelled 96.8 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 50 d1qvwa_ not modelled 96.7 11 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 51 c3l3bA_ not modelled 96.7 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 52 c3fseB_ not modelled 96.7 19 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 53 c3n7tA_ not modelled 96.6 18 PDB header:protein binding Chain: A: PDB Molecule:macrophage binding protein; PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis 54 d1vhqa_ not modelled 96.6 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 55 c3cneD_ not modelled 96.4 11 PDB header:hydrolase Chain: D: PDB Molecule:putative protease i; PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron 56 d1u9ca_ not modelled 96.3 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 57 c1p81A_ not modelled 96.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase hpii; PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli 58 c3en0A_ not modelled 96.2 18 PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase 59 d1n57a_ not modelled 95.1 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 60 c3kklA_ not modelled 94.9 19 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 61 d1xi8a3 not modelled 94.8 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 62 d1oi4a1 not modelled 94.2 31 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 63 c3f5dA_ not modelled 93.6 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis 64 d1p5fa_ not modelled 93.6 27 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 65 d1g2ia_ not modelled 93.5 27 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 66 c3efeC_ not modelled 93.2 27 PDB header:chaperone Chain: C: PDB Molecule:thij/pfpi family protein; PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis 67 c2an1D_ not modelled 91.9 23 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 68 d1wu2a3 not modelled 91.0 19 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 69 d1uz5a3 not modelled 90.6 24 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 70 c3pfnB_ not modelled 90.6 15 PDB header:transferase Chain: B: PDB Molecule:nad kinase; PDBTitle: crystal structure of human nad kinase 71 c3bhnA_ not modelled 90.2 18 PDB header:unknown function Chain: A: PDB Molecule:thij/pfpi domain protein; PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution 72 c3ej6D_ not modelled 90.2 13 PDB header:oxidoreductase Chain: D: PDB Molecule:catalase-3; PDBTitle: neurospora crassa catalase-3 crystal structure 73 d2fexa1 not modelled 90.2 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 74 d2ftsa3 not modelled 90.1 25 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 75 d2ab0a1 not modelled 89.7 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 76 c1uz5A_ not modelled 89.4 23 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 77 c2nqqA_ not modelled 89.2 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 78 c3nooB_ not modelled 89.2 30 PDB header:lyase Chain: B: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens 79 c2fu3A_ not modelled 88.6 30 PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain 80 c3ot1B_ not modelled 88.3 21 PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein 81 c2vrnA_ not modelled 88.0 21 PDB header:hydrolase Chain: A: PDB Molecule:protease i; PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily 82 d1mkza_ not modelled 86.7 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 83 d1y5ea1 not modelled 86.6 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 84 c3mgkA_ not modelled 86.5 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:intracellular protease/amidase related enzyme PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824 85 c3ewnA_ not modelled 86.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae 86 c2pjkA_ not modelled 83.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 87 c3g85A_ not modelled 82.5 9 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum 88 c3afoB_ not modelled 82.1 13 PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh 89 c3graA_ not modelled 81.3 20 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, arac family; PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida 90 c3dzvB_ not modelled 81.2 17 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 91 c3d8tB_ not modelled 80.2 15 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: thermus thermophilus uroporphyrinogen iii synthase 92 c2is8A_ not modelled 79.1 18 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 93 d2f7wa1 not modelled 77.4 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 94 c1wu2B_ not modelled 76.0 19 PDB header:structural genomics,biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein; PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3 95 c2zkiH_ not modelled 75.6 16 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 96 d1sc6a2 not modelled 74.6 18 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 97 c1zuwA_ not modelled 74.3 14 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu 98 d1wd7a_ not modelled 73.2 22 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 99 c3er6D_ not modelled 73.2 20 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus 100 c2zuuA_ not modelled 72.5 13 PDB header:transferase Chain: A: PDB Molecule:lacto-n-biose phosphorylase; PDBTitle: crystal structure of galacto-n-biose/lacto-n-biose i phosphorylase in2 complex with glcnac 101 c2higA_ not modelled 71.3 23 PDB header:transferase Chain: A: PDB Molecule:6-phospho-1-fructokinase; PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei. 102 c2d0iC_ not modelled 70.3 13 PDB header:oxidoreductase Chain: C: PDB Molecule:dehydrogenase; PDBTitle: crystal structure ph0520 protein from pyrococcus horikoshii ot3 103 d1vpea_ not modelled 68.4 17 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 104 d1jlja_ not modelled 68.1 19 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 105 c3s40C_ not modelled 66.7 17 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 106 d1gdha2 not modelled 65.5 8 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 107 d2nqra3 not modelled 65.0 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 108 d1uuya_ not modelled 64.2 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 109 c2duwA_ not modelled 63.4 16 PDB header:ligand binding protein Chain: A: PDB Molecule:putative coa-binding protein; PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae 110 d16pka_ not modelled 62.8 13 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 111 d1phpa_ not modelled 62.1 15 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 112 d1u0ta_ not modelled 61.9 10 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 113 d2g2ca1 not modelled 60.1 8 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 114 c3n7uD_ not modelled 59.7 14 PDB header:oxidoreductase Chain: D: PDB Molecule:formate dehydrogenase; PDBTitle: nad-dependent formate dehydrogenase from higher-plant arabidopsis2 thaliana in complex with nad and azide 115 c3k9cA_ not modelled 59.3 27 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species. 116 c1ybaC_ not modelled 58.9 18 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: the active form of phosphoglycerate dehydrogenase 117 c1jr2A_ not modelled 58.1 16 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 118 d1jr2a_ not modelled 58.1 16 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 119 c3q3vA_ not modelled 57.2 17 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 120 d1fw8a_ not modelled 56.9 16 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0