Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	K	I	A	V	L	I	T	D	E	F	E	D	S	E	F	T	S	P	A	D	E	F	R	K	A	G	H	E	V	I	T	I	E	K	Q	A	G	K	T	V	K	G	K	K	G	E	A	S	V	T	I	D	K	S	I	D	E
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	T	P	A	E	F	D	A	L	L	L	P	G	G	H	S	P	D	Y	L	R	G	D	N	R	F	V	T	F	T	R	D	F	V	N	S	G	K	P	V	F	A	I	C	H	G	P	Q	L	L	I	S	A	D	V	I	R	G	R	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Sequence		L	T	A	V	K	P	I	I	I	D	V	K	N	A	G	A	E	F	Y	D	Q	E	V	V	V	D	K	D	Q	L	V	T	S	R	T	P	D	D	L	P	A	F	N	R	E	A	L	R	L	L	G	A
Secondary structure
SS confidence
Disorder																																																			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1oi4 chain A domain 1 Region: 2 - 171 Aligned: 170 Modelled: 170 Confidence: 100.0% Identity: 100% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3fse chain B Region: 2 - 171 Aligned: 168 Modelled: 166 Confidence: 100.0% Identity: 40% PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution Phyre2 PDB 3uk7 chain B Region: 2 - 172 Aligned: 170 Modelled: 171 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d Phyre2 PDB 1g2i chain A Region: 4 - 170 Aligned: 164 Modelled: 167 Confidence: 100.0% Identity: 46% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3cne chain D Region: 2 - 171 Aligned: 166 Modelled: 170 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: D: PDB Molecule:putative protease i; PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron Phyre2 PDB 3ot1 chain B Region: 1 - 172 Aligned: 170 Modelled: 171 Confidence: 100.0% Identity: 22% PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein Phyre2 PDB 1p5f chain A Region: 2 - 172 Aligned: 170 Modelled: 171 Confidence: 100.0% Identity: 24% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3kkl chain A Region: 3 - 172 Aligned: 170 Modelled: 170 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae Phyre2 PDB 1u9c chain A Region: 1 - 172 Aligned: 172 Modelled: 172 Confidence: 100.0% Identity: 23% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 2vrn chain A Region: 2 - 171 Aligned: 169 Modelled: 170 Confidence: 100.0% Identity: 31% PDB header:hydrolase Chain: A: PDB Molecule:protease i; PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily Phyre2 PDB 1qvw chain A Region: 2 - 172 Aligned: 171 Modelled: 167 Confidence: 100.0% Identity: 22% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3ewn chain A Region: 2 - 170 Aligned: 166 Modelled: 167 Confidence: 100.0% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae Phyre2 PDB 3efe chain C Region: 3 - 171 Aligned: 165 Modelled: 169 Confidence: 100.0% Identity: 25% PDB header:chaperone Chain: C: PDB Molecule:thij/pfpi family protein; PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis Phyre2 PDB 3n7t chain A Region: 2 - 170 Aligned: 169 Modelled: 168 Confidence: 100.0% Identity: 25% PDB header:protein binding Chain: A: PDB Molecule:macrophage binding protein; PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis Phyre2 PDB 3noo chain B Region: 2 - 172 Aligned: 166 Modelled: 171 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: B: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens Phyre2 PDB 3mgk chain A Region: 2 - 170 Aligned: 167 Modelled: 169 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:intracellular protease/amidase related enzyme PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824 Phyre2 PDB 2ab0 chain A domain 1 Region: 2 - 172 Aligned: 170 Modelled: 171 Confidence: 100.0% Identity: 22% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 2fex chain A domain 1 Region: 4 - 171 Aligned: 164 Modelled: 168 Confidence: 100.0% Identity: 25% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3bhn chain A Region: 4 - 170 Aligned: 163 Modelled: 167 Confidence: 100.0% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:thij/pfpi domain protein; PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution Phyre2 PDB 3f5d chain A Region: 3 - 171 Aligned: 162 Modelled: 166 Confidence: 100.0% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis Phyre2 1 d1oi4a1 2 c3fseB_ 3 c3uk7B_ 4 d1g2ia_ 5 c3cneD_ 6 c3ot1B_ 7 d1p5fa_ 8 c3kklA_ 9 d1u9ca_ 10 c2vrnA_ 11 d1qvwa_ 12 c3ewnA_ 13 c3efeC_ 14 c3n7tA_ 15 c3nooB_ 16 c3mgkA_ 17 d2ab0a1 18 d2fexa1 19 c3bhnA_ 20 c3f5dA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1oi4a1 100.0 100 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 2 c3fseB_ 100.0 40 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 3 c3uk7B_ 100.0 30 PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d 4 d1g2ia_ 100.0 46 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 5 c3cneD_ 100.0 17 PDB header:hydrolase Chain: D: PDB Molecule:putative protease i; PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron 6 c3ot1B_ 100.0 22 PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein 7 d1p5fa_ 100.0 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 8 c3kklA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 9 d1u9ca_ 100.0 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 10 c2vrnA_ 100.0 31 PDB header:hydrolase Chain: A: PDB Molecule:protease i; PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily 11 d1qvwa_ 100.0 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 12 c3ewnA_ 100.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae 13 c3efeC_ 100.0 25 PDB header:chaperone Chain: C: PDB Molecule:thij/pfpi family protein; PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis 14 c3n7tA_ 100.0 25 PDB header:protein binding Chain: A: PDB Molecule:macrophage binding protein; PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis 15 c3nooB_ 100.0 20 PDB header:lyase Chain: B: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens 16 c3mgkA_ 100.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:intracellular protease/amidase related enzyme PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824 17 d2ab0a1 100.0 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 18 d2fexa1 100.0 25 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 19 c3bhnA_ 100.0 17 PDB header:unknown function Chain: A: PDB Molecule:thij/pfpi domain protein; PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution 20 c3f5dA_ 100.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis 21 d1n57a_ not modelled 100.0 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 22 c3er6D_ not modelled 100.0 12 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus 23 c3graA_ not modelled 100.0 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, arac family; PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida 24 c1sy7B_ not modelled 100.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase 1; PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution. 25 d1vhqa_ not modelled 100.0 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 26 d1sy7a1 not modelled 100.0 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 27 c3l3bA_ not modelled 99.9 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 28 d1p80a1 not modelled 99.9 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 29 c1p81A_ not modelled 99.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase hpii; PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli 30 c3ej6D_ not modelled 99.1 22 PDB header:oxidoreductase Chain: D: PDB Molecule:catalase-3; PDBTitle: neurospora crassa catalase-3 crystal structure 31 d1t3ta2 not modelled 98.9 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 32 c2iufA_ not modelled 98.8 21 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase; PDBTitle: the structures of penicillium vitale catalase: resting2 state, oxidised state (compound i) and complex with3 aminotriazole 33 c3d54D_ not modelled 98.6 24 PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima 34 d1q7ra_ not modelled 98.5 29 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 35 c2issF_ not modelled 98.3 31 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 36 d2nv0a1 not modelled 98.2 26 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 37 d1ka9h_ not modelled 98.2 34 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 38 d1o1ya_ not modelled 98.0 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 39 c2ywjA_ not modelled 97.9 28 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 40 c2ywdA_ not modelled 97.9 21 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of glutamine amidotransferase 41 c3l7nA_ not modelled 97.8 24 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 42 d1gpma2 not modelled 97.7 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 43 c3r74B_ not modelled 97.7 24 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 44 c1t3tA_ not modelled 97.7 22 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 45 d1wl8a1 not modelled 97.6 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 46 d2abwa1 not modelled 97.6 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 47 d1jvna2 not modelled 97.6 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 48 d1k9vf_ not modelled 97.5 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 49 c3l83A_ not modelled 97.4 19 PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus 50 d2a9va1 not modelled 97.4 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 51 d1qdlb_ not modelled 97.4 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 52 c3l4eA_ not modelled 97.3 14 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 53 c1keeH_ not modelled 97.3 22 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 54 d1a9xb2 not modelled 97.2 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 55 c1jvnB_ not modelled 97.2 30 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 56 d1i1qb_ not modelled 97.2 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 57 c3fijD_ not modelled 97.1 29 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 58 d1i7qb_ not modelled 97.0 27 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 59 d2ghra1 not modelled 96.4 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like 60 d1fyea_ not modelled 96.2 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 61 c2vpiA_ not modelled 96.2 21 PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain 62 c2ad5B_ not modelled 95.9 32 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 63 c3nvaB_ not modelled 95.5 17 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 64 d1s1ma1 not modelled 95.4 31 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 65 c3tqiB_ not modelled 95.2 20 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 66 c3uowB_ not modelled 95.1 29 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 67 c1gpmD_ not modelled 95.0 20 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 68 c1vcnA_ not modelled 95.0 27 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 69 c2w7tA_ not modelled 95.0 23 PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin 70 c2v4uA_ not modelled 95.0 19 PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine 71 d1vcoa1 not modelled 94.8 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 72 c3en0A_ not modelled 94.1 15 PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase 73 d1ycga1 not modelled 94.1 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 74 d1e5da1 not modelled 93.7 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 75 c2ywcC_ not modelled 93.7 29 PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp 76 d1d4aa_ not modelled 92.8 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 77 d1iowa1 not modelled 92.7 22 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 78 c2h2wA_ not modelled 91.6 14 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 79 c3fniA_ not modelled 89.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 80 c2ax3A_ not modelled 87.9 12 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 81 c3klbA_ not modelled 87.5 16 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 82 c3d3jA_ not modelled 86.7 15 PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 83 c2vxoB_ not modelled 85.5 22 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp 84 d1vmea1 not modelled 84.0 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 85 d2ax3a2 not modelled 83.2 12 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 86 d1ccwa_ not modelled 82.1 17 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 87 c1l9xA_ not modelled 80.4 27 PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase 88 d1l9xa_ not modelled 80.4 27 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 89 c2dlnA_ not modelled 78.3 25 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 90 c2dg2D_ not modelled 78.2 8 PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein 91 c2iyaB_ not modelled 77.6 14 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 92 d1u0ta_ not modelled 77.1 15 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 93 c1ychD_ not modelled 75.6 15 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 94 c2zuuA_ not modelled 75.4 12 PDB header:transferase Chain: A: PDB Molecule:lacto-n-biose phosphorylase; PDBTitle: crystal structure of galacto-n-biose/lacto-n-biose i phosphorylase in2 complex with glcnac 95 c3okfA_ not modelled 73.9 15 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae 96 c3d3kD_ not modelled 73.5 12 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 97 d1fmfa_ not modelled 72.1 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 98 c3edoA_ not modelled 71.0 13 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 99 d2auna2 not modelled 70.7 11 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 100 c3ragA_ not modelled 69.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein aaci_0196 from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446 101 d1g5qa_ not modelled 53.1 17 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 102 d1a9xa4 not modelled 52.2 17 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 103 c2qv7A_ not modelled 52.0 17 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase dgkb; PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg 104 c2an1D_ not modelled 51.2 19 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 105 c2r47C_ not modelled 49.9 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein mth_862; PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus 106 c1zrsB_ not modelled 49.0 11 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: wild-type ld-carboxypeptidase 107 c2i80B_ not modelled 47.9 11 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies 108 c2ejbA_ not modelled 46.6 14 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 109 c1y80A_ not modelled 46.3 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 110 d2qv7a1 not modelled 44.2 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 111 d2a5la1 not modelled 44.0 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 112 d1kwga3 not modelled 43.2 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:A4 beta-galactosidase middle domain 113 c2zktB_ not modelled 42.7 23 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 114 d1x7fa2 not modelled 41.5 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Outer surface protein, N-terminal domain 115 c2jjmH_ not modelled 38.8 21 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 116 c3hlyA_ not modelled 37.7 12 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 117 d1jeyb2 not modelled 37.7 15 Fold:vWA-like Superfamily:vWA-like Family:Ku80 subunit N-terminal domain 118 d3bula2 not modelled 37.0 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 119 d1zl0a2 not modelled 36.9 11 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 120 d2p1ra1 not modelled 36.0 11 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0