Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A6F1
DateThu Jan 5 11:02:59 GMT 2012
Unique Job IDa2c3bcfe930de119

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1keeH_
Top template information
PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
Confidence and coverage
Confidence:100.0% Coverage: 99%
378 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI
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Disorder  ?????






















































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   .........70.........80.........90.........100.........110.........120
Sequence  GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR
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?

























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   .........130.........140.........150.........160.........170.........180
Sequence  LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG
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???????
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   .........190.........200.........210.........220.........230.........240
Sequence  LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN
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Disorder  ?????????


















































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   .........250.........260.........270.........280.........290.........300
Sequence  GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV
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   .........310.........320.........330.........340.........350.........360
Sequence  EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP
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   .........370.........380..
Sequence  HDAAPLFDHFIELIEQYRKTAK
Secondary structure 

SS confidence 





















Disorder 


















???
Disorder confidence 





















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1kee chain H

3D model

Region: 2 - 380
Aligned: 378
Modelled: 379
Confidence: 100.0%
Identity: 100%
PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin

Phyre2

PDB 1a9x chain B domain 1

3D model

Region: 2 - 151
Aligned: 150
Modelled: 150
Confidence: 100.0%
Identity: 100%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: Carbamoyl phosphate synthetase, small subunit N-terminal domain
Family: Carbamoyl phosphate synthetase, small subunit N-terminal domain

Phyre2

PDB 1a9x chain B domain 2

3D model

Region: 153 - 380
Aligned: 227
Modelled: 228
Confidence: 100.0%
Identity: 99%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 2ywc chain C

3D model

Region: 194 - 374
Aligned: 176
Modelled: 181
Confidence: 100.0%
Identity: 28%
PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp

Phyre2

PDB 1gpm chain D

3D model

Region: 190 - 382
Aligned: 188
Modelled: 193
Confidence: 100.0%
Identity: 21%
PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate

Phyre2

PDB 2vxo chain B

3D model

Region: 189 - 382
Aligned: 188
Modelled: 194
Confidence: 100.0%
Identity: 23%
PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp

Phyre2

PDB 3tqi chain B

3D model

Region: 190 - 382
Aligned: 179
Modelled: 191
Confidence: 100.0%
Identity: 28%
PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii

Phyre2

PDB 2a9v chain A domain 1

3D model

Region: 193 - 382
Aligned: 184
Modelled: 190
Confidence: 100.0%
Identity: 24%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1gpm chain A domain 2

3D model

Region: 190 - 374
Aligned: 180
Modelled: 185
Confidence: 100.0%
Identity: 21%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1wl8 chain A domain 1

3D model

Region: 193 - 376
Aligned: 178
Modelled: 184
Confidence: 100.0%
Identity: 26%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1qdl chain B

3D model

Region: 192 - 374
Aligned: 180
Modelled: 183
Confidence: 100.0%
Identity: 24%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 3r74 chain B

3D model

Region: 171 - 377
Aligned: 198
Modelled: 207
Confidence: 100.0%
Identity: 15%
PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383

Phyre2

PDB 1i7q chain B

3D model

Region: 193 - 375
Aligned: 177
Modelled: 183
Confidence: 100.0%
Identity: 23%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 2vpi chain A

3D model

Region: 191 - 381
Aligned: 176
Modelled: 179
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain

Phyre2

PDB 3uow chain B

3D model

Region: 193 - 374
Aligned: 166
Modelled: 182
Confidence: 100.0%
Identity: 25%
PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum

Phyre2

PDB 1vcn chain A

3D model

Region: 68 - 378
Aligned: 275
Modelled: 279
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion

Phyre2

PDB 1i1q chain B

3D model

Region: 193 - 376
Aligned: 172
Modelled: 182
Confidence: 100.0%
Identity: 24%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1jvn chain B

3D model

Region: 189 - 372
Aligned: 174
Modelled: 178
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites

Phyre2

PDB 1s1m chain A domain 1

3D model

Region: 203 - 381
Aligned: 178
Modelled: 179
Confidence: 100.0%
Identity: 24%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1vco chain A domain 1

3D model

Region: 193 - 378
Aligned: 184
Modelled: 186
Confidence: 100.0%
Identity: 26%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2
1

c1keeH_
2

d1a9xb1
3

d1a9xb2
4

c2ywcC_
5

c1gpmD_
6

c2vxoB_
7

c3tqiB_
8

d2a9va1
9

d1gpma2
10

d1wl8a1
11

d1qdlb_
12

c3r74B_
13

d1i7qb_
14

c2vpiA_
15

c3uowB_
16

c1vcnA_
17

d1i1qb_
18

c1jvnB_
19

d1s1ma1
20

d1vcoa1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1keeH_



100.0 100 PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
2d1a9xb1



100.0 100 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Carbamoyl phosphate synthetase, small subunit N-terminal domain
Family:Carbamoyl phosphate synthetase, small subunit N-terminal domain
3d1a9xb2



100.0 99 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
4c2ywcC_



100.0 28 PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp
5c1gpmD_



100.0 21 PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
6c2vxoB_



100.0 23 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp
7c3tqiB_



100.0 28 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii
8d2a9va1



100.0 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
9d1gpma2



100.0 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
10d1wl8a1



100.0 26 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
11d1qdlb_



100.0 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
12c3r74B_



100.0 15 PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
13d1i7qb_



100.0 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
14c2vpiA_



100.0 24 PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
15c3uowB_



100.0 25 PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
16c1vcnA_



100.0 21 PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
17d1i1qb_



100.0 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
18c1jvnB_



100.0 20 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
19d1s1ma1



100.0 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
20d1vcoa1



100.0 26 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
21c2ad5B_



not modelled 100.0 23 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
22d2nv0a1



not modelled 100.0 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
23d1k9vf_



not modelled 100.0 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
24c3nvaB_



not modelled 100.0 22 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus
25c2v4uA_



not modelled 100.0 21 PDB header:ligase
Chain: A: PDB Molecule:ctp synthase 2;
PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine
26d1ka9h_



not modelled 100.0 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
27c2w7tA_



not modelled 100.0 24 PDB header:ligase
Chain: A: PDB Molecule:putative cytidine triphosphate synthase;
PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin
28c3d54D_



not modelled 100.0 20 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
29c3fijD_



not modelled 100.0 20 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:lin1909 protein;
PDBTitle: crystal structure of a uncharacterized protein lin1909
30d1jvna2



not modelled 100.0 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
31d1q7ra_



not modelled 100.0 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
32c2issF_



not modelled 99.9 18 PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
33c1l9xA_



not modelled 99.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyl hydrolase;
PDBTitle: structure of gamma-glutamyl hydrolase
34d1l9xa_



not modelled 99.9 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
35c3l83A_



not modelled 99.9 20 PDB header:transferase
Chain: A: PDB Molecule:glutamine amido transferase;
PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus
36c2ywjA_



not modelled 99.9 16 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii
37c3l7nA_



not modelled 99.9 25 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of smu.1228c
38d1o1ya_



not modelled 99.9 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
39c2ywdA_



not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of glutamine amidotransferase
40d2abwa1



not modelled 99.9 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
41d1t3ta2



not modelled 99.9 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
42d2ghra1



not modelled 99.8 12 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:HTS-like
43c2h2wA_



not modelled 99.7 14 PDB header:transferase
Chain: A: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution
44c1t3tA_



not modelled 98.5 16 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
45c1sy7B_



not modelled 98.1 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase 1;
PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution.
46c3uk7B_



not modelled 98.0 27 PDB header:transferase
Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing
PDBTitle: crystal structure of arabidopsis thaliana dj-1d
47d1vhqa_



not modelled 97.9 11 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
48c3l3bA_



not modelled 97.8 12 PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
49d1sy7a1



not modelled 97.8 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
50c3fseB_



not modelled 97.6 14 PDB header:hydrolase
Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and
PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution
51c3cneD_



not modelled 97.5 19 PDB header:hydrolase
Chain: D: PDB Molecule:putative protease i;
PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron
52c3kklA_



not modelled 97.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
53d1p80a1



not modelled 97.4 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
54c3n7tA_



not modelled 97.3 15 PDB header:protein binding
Chain: A: PDB Molecule:macrophage binding protein;
PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis
55d1qvwa_



not modelled 97.3 10 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
56d1p5fa_



not modelled 97.2 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
57d1oi4a1



not modelled 97.2 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
58c3l4eA_



not modelled 97.1 14 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
59d1g2ia_



not modelled 96.9 22 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
60d1n57a_



not modelled 96.9 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
61d1u9ca_



not modelled 96.8 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
62c3ot1B_



not modelled 96.7 23 PDB header:structural genomics
Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate
PDBTitle: crystal structure of vc2308 protein
63c1p81A_



not modelled 96.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli
64d1fyea_



not modelled 96.4 13 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Aspartyl dipeptidase PepE
65d2jfga1



not modelled 96.3 21 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
66c3f5dA_



not modelled 96.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis
67d2ab0a1



not modelled 95.9 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
68c3ewnA_



not modelled 95.9 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thij/pfpi family protein;
PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae
69c2vrnA_



not modelled 95.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:protease i;
PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily
70c3efeC_



not modelled 95.0 18 PDB header:chaperone
Chain: C: PDB Molecule:thij/pfpi family protein;
PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis
71d1p3da1



not modelled 94.9 13 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
72d2fexa1



not modelled 94.8 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
73c3uagA_



not modelled 93.2 21 PDB header:ligase
Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d-
PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
74c3graA_



not modelled 93.1 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, arac family;
PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida
75d1j6ua1



not modelled 93.1 13 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
76c2an1D_



not modelled 93.1 22 PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
77c3nooB_



not modelled 92.4 23 PDB header:lyase
Chain: B: PDB Molecule:thij/pfpi family protein;
PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens
78c2yxbA_



not modelled 92.2 21 PDB header:isomerase
Chain: A: PDB Molecule:coenzyme b12-dependent mutase;
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
79c3bhnA_



not modelled 91.7 15 PDB header:unknown function
Chain: A: PDB Molecule:thij/pfpi domain protein;
PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution
80c1m6vE_



not modelled 91.2 21 PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
81c2f00A_



not modelled 91.0 20 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
82c1j6uA_



not modelled 90.9 12 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution
83d1fmfa_



not modelled 90.6 18 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
84c3en0A_



not modelled 89.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:cyanophycinase;
PDBTitle: the structure of cyanophycinase
85c3mgkA_



not modelled 89.5 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:intracellular protease/amidase related enzyme
PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824
86c2dc1A_



not modelled 89.1 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate dehydrogenase;
PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus
87c3hn7A_



not modelled 88.6 19 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution
88c2zkiH_



not modelled 87.7 20 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
89c3r6mD_



not modelled 87.7 22 PDB header:hydrolase
Chain: D: PDB Molecule:yeaz, resuscitation promoting factor;
PDBTitle: crystal structure of vibrio parahaemolyticus yeaz
90d1t0ba_



not modelled 87.2 9 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:ThuA-like
91d1b74a1



not modelled 87.1 26 Fold:ATC-like
Superfamily:Aspartate/glutamate racemase
Family:Aspartate/glutamate racemase
92c2dlnA_



not modelled 87.1 16 PDB header:ligase(peptidoglycan synthesis)
Chain: A: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution
93c3rhtB_



not modelled 85.8 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:(gatase1)-like protein;
PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus
94c1y80A_



not modelled 85.7 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica
95c2rjoA_



not modelled 85.6 17 PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans
96c4a26B_



not modelled 85.5 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic;
PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase
97c1xeaD_



not modelled 85.2 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae
98d1ccwa_



not modelled 85.2 15 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
99c2pv7B_



not modelled 83.8 15 PDB header:isomerase, oxidoreductase
Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm)
PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution
100c3gfgB_



not modelled 83.4 9 PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa;
PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form
101c1b74A_



not modelled 83.4 24 PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: glutamate racemase from aquifex pyrophilus
102c3eagA_



not modelled 82.8 16 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides
103d1a9xa3



not modelled 81.8 16 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
104c3evnA_



not modelled 80.7 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r
105d1xi8a3



not modelled 80.2 12 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
106c1vjtA_



not modelled 80.2 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution
107c3er6D_



not modelled 80.2 15 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative transcriptional regulator protein;
PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus
108d7reqa2



not modelled 80.1 14 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
109c3sozC_



not modelled 80.0 17 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:cytoplasmic protein stm1381;
PDBTitle: cytoplasmic protein stm1381 from salmonella typhimurium lt2
110c3db2C_



not modelled 79.0 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase;
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution
111c3e18A_



not modelled 78.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of nad-binding protein from listeria innocua
112c2dzdB_



not modelled 78.3 14 PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase
113c2ho3D_



not modelled 78.1 13 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase, gfo/idh/moca family from2 streptococcus pneumoniae
114d1mkza_



not modelled 78.0 10 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
115c3dhyC_



not modelled 77.9 13 PDB header:hydrolase
Chain: C: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structures of mycobacterium tuberculosis s-adenosyl-l-2 homocysteine hydrolase in ternary complex with substrate and3 inhibitors
116c2jfnA_



not modelled 77.6 24 PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala
117d1tjya_



not modelled 77.3 16 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
118c2r47C_



not modelled 76.7 26 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein mth_862;
PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus
119c3o1hB_



not modelled 76.7 15 PDB header:signaling protein
Chain: B: PDB Molecule:periplasmic protein tort;
PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
120c2dwuA_



not modelled 75.9 20 PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0