Phyre 2 alignment of P0A6F1 with c1ehiB_

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Job Description | P0A6F1
Confidence | 31.73% | Date | Thu Jan 5 11:02:59 GMT 2012
Rank | 383 | Aligned Residues | 29
% Identity | 21% | Template | c1ehiB_
PDB info | PDB header:ligase | Chain: B: PDB Molecule:d-alanine:d-lactate ligase; | PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides
Resolution | 2.38 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 190 | . | . | . | . | . | . | . | . | . | 200 |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | 210 | . | . | . |  | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Query Sequence |  | L | P | F | H | V | V | A | Y | D | F | G | . | . | . | . | . | . | . | . | . | . | . | A | K | R | N | I | L | R | M | L | V | D | R | G | . | C | R | L | T | I | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | K | K | R | V | A | L | I | . | F | G | G | N | S | S | E | H | D | V | S | K | R | S | A | Q | N | F | Y | N | A | I | E | A | T | G | K | Y | E | I | I | V | F
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  | S | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 402 | . | . | . | . | . | . | . |  | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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