Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	S	E	N	P	L	L	A	L	R	E	K	I	S	A	L	D	E	K	L	L	A	L	L	A	E	R	R	E	L	A	V	E	V	G	K	A	K	L	L	S	H	R	P	V	R	D	I	D	R	E	R	D	L	L	E	R	L	I
Secondary structure
SS confidence
Disorder		?	?	?	?																																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	L	G	K	A	H	H	L	D	A	H	Y	I	T	R	L	F	Q	L	I	I	E	D	S	V	L	T	Q	Q	A	L	L	Q	Q	H	L	N	K	I	N	P	H	S	A	R	I	A	F	L	G	P	K	G	S	Y	S	H	L	A	A
Secondary structure
SS confidence
Disorder					?	?	?																									?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	Q	Y	A	A	R	H	F	E	Q	F	I	E	S	G	C	A	K	F	A	D	I	F	N	Q	V	E	T	G	Q	A	D	Y	A	V	V	P	I	E	N	T	S	S	G	A	I	N	D	V	Y	D	L	L	Q	H	T	S	L	S	I
Secondary structure
SS confidence
Disorder									?																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	G	E	M	T	L	T	I	D	H	C	L	L	V	S	G	T	T	D	L	S	T	I	N	T	V	Y	S	H	P	Q	P	F	Q	Q	C	S	K	F	L	N	R	Y	P	H	W	K	I	E	Y	T	E	S	T	S	A	A	M	E	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	A	Q	A	K	S	P	H	V	A	A	L	G	S	E	A	G	G	T	L	Y	G	L	Q	V	L	E	R	I	E	A	N	Q	R	Q	N	F	T	R	F	V	V	L	A	R	K	A	I	N	V	S	D	Q	V	P	A	K	T	T	L
Secondary structure
SS confidence
Disorder																																			?													?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	M	A	T	G	Q	Q	A	G	A	L	V	E	A	L	L	V	L	R	N	H	N	L	I	M	T	R	L	E	S	R	P	I	H	G	N	P	W	E	E	M	F	Y	L	D	I	Q	A	N	L	E	S	A	E	M	Q	K	A	L	K
Secondary structure
SS confidence
Disorder																															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Sequence		E	L	G	E	I	T	R	S	M	K	V	L	G	C	Y	P	S	E	N	V	V	P	V	D	P	T
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mwb chain A Region: 104 - 382 Aligned: 277 Modelled: 279 Confidence: 100.0% Identity: 25% PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a Phyre2 PDB 2qmx chain B Region: 103 - 380 Aligned: 271 Modelled: 278 Confidence: 100.0% Identity: 33% PDB header:ligase Chain: B: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of l-phe inhibited prephenate dehydratase from2 chlorobium tepidum tls Phyre2 PDB 3luy chain A Region: 101 - 382 Aligned: 276 Modelled: 281 Confidence: 100.0% Identity: 23% PDB header:isomerase Chain: A: PDB Molecule:probable chorismate mutase; PDBTitle: putative chorismate mutase from bifidobacterium adolescentis Phyre2 PDB 2qmw chain A Region: 104 - 375 Aligned: 262 Modelled: 271 Confidence: 100.0% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of the prephenate dehydratase (pdt) from2 staphylococcus aureus subsp. aureus mu50 Phyre2 PDB 2qmw chain A domain 1 Region: 104 - 293 Aligned: 183 Modelled: 189 Confidence: 100.0% Identity: 28% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2qmw chain A domain 2 Region: 298 - 375 Aligned: 77 Modelled: 77 Confidence: 99.9% Identity: 17% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phenylalanine metabolism regulatory domain Phyre2 PDB 1phz chain A domain 1 Region: 288 - 378 Aligned: 90 Modelled: 91 Confidence: 99.9% Identity: 20% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phenylalanine metabolism regulatory domain Phyre2 PDB 3rmi chain A Region: 5 - 100 Aligned: 96 Modelled: 96 Confidence: 99.8% Identity: 26% PDB header:isomerase Chain: A: PDB Molecule:chorismate mutase protein; PDBTitle: crystal structure of chorismate mutase from bartonella henselae str.2 houston-1 in complex with malate Phyre2 PDB 1ecm chain A Region: 5 - 95 Aligned: 91 Modelled: 91 Confidence: 99.8% Identity: 100% Fold: Chorismate mutase II Superfamily: Chorismate mutase II Family: Dimeric chorismate mutase Phyre2 PDB 2gtv chain X domain 1 Region: 5 - 87 Aligned: 83 Modelled: 83 Confidence: 99.8% Identity: 34% Fold: Chorismate mutase II Superfamily: Chorismate mutase II Family: monomeric chorismate mutase Phyre2 PDB 2d8d chain A domain 1 Region: 5 - 84 Aligned: 79 Modelled: 80 Confidence: 99.8% Identity: 28% Fold: Chorismate mutase II Superfamily: Chorismate mutase II Family: Dimeric chorismate mutase Phyre2 PDB 3nvt chain A Region: 9 - 147 Aligned: 122 Modelled: 128 Confidence: 99.7% Identity: 25% PDB header:transferase/isomerase Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase; PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e Phyre2 PDB 1ybz chain A domain 1 Region: 6 - 89 Aligned: 73 Modelled: 84 Confidence: 99.7% Identity: 33% Fold: Chorismate mutase II Superfamily: Chorismate mutase II Family: Dimeric chorismate mutase Phyre2 PDB 2fp1 chain A domain 1 Region: 19 - 106 Aligned: 88 Modelled: 88 Confidence: 99.6% Identity: 23% Fold: Chorismate mutase II Superfamily: Chorismate mutase II Family: Secreted chorismate mutase-like Phyre2 PDB 2h9d chain A domain 1 Region: 1 - 92 Aligned: 81 Modelled: 92 Confidence: 99.6% Identity: 22% Fold: Chorismate mutase II Superfamily: Chorismate mutase II Family: Dimeric chorismate mutase Phyre2 PDB 2gbb chain A Region: 20 - 94 Aligned: 75 Modelled: 75 Confidence: 99.6% Identity: 19% PDB header:isomerase Chain: A: PDB Molecule:putative chorismate mutase; PDBTitle: crystal structure of secreted chorismate mutase from2 yersinia pestis Phyre2 PDB 2qbv chain A Region: 6 - 78 Aligned: 73 Modelled: 73 Confidence: 99.5% Identity: 33% PDB header:isomerase Chain: A: PDB Molecule:chorismate mutase; PDBTitle: crystal structure of intracellular chorismate mutase from2 mycobacterium tuberculosis Phyre2 PDB 2phm chain A Region: 291 - 386 Aligned: 95 Modelled: 96 Confidence: 99.3% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase); PDBTitle: structure of phenylalanine hydroxylase dephosphorylated Phyre2 PDB 1ygy chain A domain 3 Region: 298 - 371 Aligned: 68 Modelled: 74 Confidence: 97.4% Identity: 13% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 1u8s chain B Region: 281 - 365 Aligned: 85 Modelled: 85 Confidence: 97.4% Identity: 9% PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor Phyre2 1 c3mwbA_ 2 c2qmxB_ 3 c3luyA_ 4 c2qmwA_ 5 d2qmwa1 6 d2qmwa2 7 d1phza1 8 c3rmiA_ 9 d1ecma_ 10 d2gtvx1 11 d2d8da1 12 c3nvtA_ 13 d1ybza1 14 d2fp1a1 15 d2h9da1 16 c2gbbA_ 17 c2qbvA_ 18 c2phmA_ 19 d1ygya3 20 c1u8sB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mwbA_ 100.0 25 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 2 c2qmxB_ 100.0 33 PDB header:ligase Chain: B: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of l-phe inhibited prephenate dehydratase from2 chlorobium tepidum tls 3 c3luyA_ 100.0 23 PDB header:isomerase Chain: A: PDB Molecule:probable chorismate mutase; PDBTitle: putative chorismate mutase from bifidobacterium adolescentis 4 c2qmwA_ 100.0 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of the prephenate dehydratase (pdt) from2 staphylococcus aureus subsp. aureus mu50 5 d2qmwa1 100.0 28 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 6 d2qmwa2 99.9 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 7 d1phza1 99.9 20 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 8 c3rmiA_ 99.8 26 PDB header:isomerase Chain: A: PDB Molecule:chorismate mutase protein; PDBTitle: crystal structure of chorismate mutase from bartonella henselae str.2 houston-1 in complex with malate 9 d1ecma_ 99.8 100 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Dimeric chorismate mutase 10 d2gtvx1 99.8 34 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:monomeric chorismate mutase 11 d2d8da1 99.8 28 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Dimeric chorismate mutase 12 c3nvtA_ 99.7 25 PDB header:transferase/isomerase Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase; PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e 13 d1ybza1 99.7 33 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Dimeric chorismate mutase 14 d2fp1a1 99.6 23 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Secreted chorismate mutase-like 15 d2h9da1 99.6 22 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Dimeric chorismate mutase 16 c2gbbA_ 99.6 19 PDB header:isomerase Chain: A: PDB Molecule:putative chorismate mutase; PDBTitle: crystal structure of secreted chorismate mutase from2 yersinia pestis 17 c2qbvA_ 99.5 33 PDB header:isomerase Chain: A: PDB Molecule:chorismate mutase; PDBTitle: crystal structure of intracellular chorismate mutase from2 mycobacterium tuberculosis 18 c2phmA_ 99.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase); PDBTitle: structure of phenylalanine hydroxylase dephosphorylated 19 d1ygya3 97.4 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 20 c1u8sB_ 97.4 9 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 21 c2nyiB_ not modelled 97.2 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 22 c3ibwA_ not modelled 97.1 6 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 23 d2f1fa1 not modelled 97.0 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 24 d1u8sa2 not modelled 96.9 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 25 d2pc6a2 not modelled 96.9 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 26 c2f1fA_ not modelled 96.8 14 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli 27 d2f06a1 not modelled 96.6 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 28 d2fgca2 not modelled 96.5 7 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 29 d5csma_ not modelled 96.5 22 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Allosteric chorismate mutase 30 c2pc6C_ not modelled 96.4 15 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 31 d1zpva1 not modelled 96.4 4 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 32 d2f06a2 not modelled 96.0 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 33 d1sc6a3 not modelled 96.0 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 34 c2fgcA_ not modelled 96.0 7 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima 35 c1ygyA_ not modelled 95.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 36 c2f06B_ not modelled 95.3 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 37 d1u8sa1 not modelled 94.9 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 38 c3n0vD_ not modelled 94.7 13 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 39 c1y7pB_ not modelled 94.5 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator 40 c3l6gA_ not modelled 94.1 17 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 41 c1tdjA_ not modelled 94.0 14 PDB header:allostery Chain: A: PDB Molecule:biosynthetic threonine deaminase; PDBTitle: threonine deaminase (biosynthetic) from e. coli 42 c3o1lB_ not modelled 93.8 17 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 43 c3louB_ not modelled 93.1 14 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 44 c3mtjA_ not modelled 92.8 11 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 45 d1xs5a_ not modelled 92.5 7 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 46 c3gxaA_ not modelled 92.2 11 PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 47 c3tmgA_ not modelled 91.9 13 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi 48 c3l76B_ not modelled 91.7 10 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 49 c2f5xC_ not modelled 91.5 16 PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd 50 c3tqwA_ not modelled 89.8 11 PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii 51 c3nrbD_ not modelled 89.7 13 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 52 c3ir1F_ not modelled 89.0 11 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 53 c3k2dA_ not modelled 88.4 5 PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus 54 c1p99A_ not modelled 88.0 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus 55 d1p99a_ not modelled 88.0 8 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 56 c3e4rA_ not modelled 87.8 14 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes 57 c2dvzA_ not modelled 86.9 14 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter 58 c2x26A_ not modelled 84.8 11 PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli 59 c2qpqC_ not modelled 84.5 17 PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis 60 c3obiC_ not modelled 84.2 11 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 61 d1tdja2 not modelled 83.7 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 62 c1r48A_ not modelled 83.1 26 PDB header:transport protein Chain: A: PDB Molecule:proline/betaine transporter; PDBTitle: solution structure of the c-terminal cytoplasmic domain2 residues 468-497 of escherichia coli protein prop 63 c1u8cB_ not modelled 83.1 16 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure 64 c2dtjA_ not modelled 81.8 10 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum 65 c3un6A_ not modelled 80.9 10 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound 66 c3n5lA_ not modelled 79.8 15 PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution 67 c1ybaC_ not modelled 77.6 15 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: the active form of phosphoglycerate dehydrogenase 68 c3k6sB_ not modelled 76.7 23 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 69 c2de4B_ not modelled 74.1 8 PDB header:hydrolase Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b; PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid 70 c3fcuB_ not modelled 73.8 16 PDB header:cell adhesion/blood clotting Chain: B: PDB Molecule:integrin beta-3; PDBTitle: structure of headpiece of integrin aiibb3 in open conformation 71 c3uifA_ not modelled 72.7 19 PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt 72 c3hn0A_ not modelled 72.6 9 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution 73 c2zhoB_ not modelled 69.1 13 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form) 74 c3qslA_ not modelled 69.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50 75 c2j0wA_ not modelled 66.5 16 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 76 c3ix1A_ not modelled 66.0 10 PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 77 c3ix1B_ not modelled 66.0 10 PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 78 c3ab4K_ not modelled 65.5 10 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 79 c3p96A_ not modelled 65.5 25 PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase serb; PDBTitle: crystal structure of phosphoserine phosphatase serb from mycobacterium2 avium, native form 80 d1tdja3 not modelled 65.1 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 81 d2hmfa3 not modelled 64.9 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 82 c3c1nA_ not modelled 64.5 17 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 83 c2re1A_ not modelled 63.7 10 PDB header:transferase Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits; PDBTitle: crystal structure of aspartokinase alpha and beta subunits 84 c2v25B_ not modelled 61.7 11 PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate 85 c3m05A_ not modelled 57.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pepe_1480; PDBTitle: the crystal structure of a functionally unknown protein2 pepe_1480 from pediococcus pentosaceus atcc 25745 86 d2cdqa2 not modelled 56.7 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 87 c2x7pA_ not modelled 54.4 14 PDB header:unknown function Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme; PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold 88 c2cdqB_ not modelled 52.1 14 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 89 c1j8yF_ not modelled 45.4 12 PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant 90 d2hmfa2 not modelled 45.2 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 91 c2xu6B_ not modelled 43.8 10 PDB header:protein binding Chain: B: PDB Molecule:mdv1 coiled coil; PDBTitle: mdv1 coiled coil domain 92 c3mahA_ not modelled 42.4 6 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 93 c3kzgB_ not modelled 42.4 13 PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila 94 c2yhsA_ not modelled 41.0 16 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the e. coli srp receptor ftsy 95 d2a5sa1 not modelled 38.8 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 96 d2j0wa2 not modelled 38.7 23 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 97 c2og2A_ not modelled 38.5 15 PDB header:protein transport Chain: A: PDB Molecule:putative signal recognition particle receptor; PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana 98 c2i4cA_ not modelled 36.9 13 PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium 99 c2ke4A_ not modelled 35.4 10 PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 100 c3h1gA_ not modelled 34.2 13 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis protein chey homolog; PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori 101 c3r84O_ not modelled 33.7 16 PDB header:transcription Chain: O: PDB Molecule:mediator of rna polymerase ii transcription subunit 11; PDBTitle: structure of the mediator head subcomplex med11/22 102 c2rc9A_ not modelled 30.8 11 PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution 103 d2czla1 not modelled 27.4 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 104 c3k5pA_ not modelled 25.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis 105 d1ozja_ not modelled 25.4 10 Fold:SMAD MH1 domain Superfamily:SMAD MH1 domain Family:SMAD MH1 domain 106 c2cnwF_ not modelled 25.4 11 PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy 107 c3i42A_ not modelled 24.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 108 d3dhxa1 not modelled 23.9 23 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 109 c2rejA_ not modelled 23.6 11 PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation 110 c2wmyH_ not modelled 23.4 16 PDB header:hydrolase Chain: H: PDB Molecule:putative acid phosphatase wzb; PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate. 111 d1qnta2 not modelled 22.6 50 Fold:Ribonuclease H-like motif Superfamily:Methylated DNA-protein cysteine methyltransferase domain Family:Methylated DNA-protein cysteine methyltransferase domain 112 d1w36d1 not modelled 21.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 113 d1nwpa_ not modelled 21.5 6 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 114 d2qswa1 not modelled 21.3 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 115 c1gk4A_ not modelled 21.3 14 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 116 c2ia0A_ not modelled 21.2 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864; PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864) 117 d1us5a_ not modelled 21.0 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 118 c3hv1A_ not modelled 20.6 12 PDB header:transport protein Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0