Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP10121
DateThu Jan 5 11:32:03 GMT 2012
Unique Job IDa044a88e9d153b7a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2yhsA_
Top template information
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
Confidence and coverage
Confidence:100.0% Coverage: 62%
307 residues ( 62% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHT
Secondary structure 

















































SS confidence 



























































Disorder  ????
???



????????????????????????????????????????????????
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   .........70.........80.........90.........100.........110.........120
Sequence  EAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNA
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Disorder  ????????????????????????????????????????????????????????????
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   .........130.........140.........150.........160.........170.........180
Sequence  EAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPV
Secondary structure 

































SS confidence 



























































Disorder  ????????????????????????????????????????????????????????????
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   .........190.........200.........210.........220.........230.........240
Sequence  EEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADV
Secondary structure 










SS confidence 



























































Disorder  ???????????


























?
???
?














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   .........250.........260.........270.........280.........290.........300
Sequence  GVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVG
Secondary structure 





















SS confidence 



























































Disorder 
















??
?



















?????????









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   .........310.........320.........330.........340.........350.........360
Sequence  VNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS
Secondary structure 



















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Disorder 




















































??




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   .........370.........380.........390.........400.........410.........420
Sequence  ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID
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Disorder 
























?
???





























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   .........430.........440.........450.........460.........470.........480
Sequence  ASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDL
Secondary structure 



























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Disorder 

??























































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   .........490.......
Sequence  RPFKADDFIEALFARED
Secondary structure 







SS confidence 
















Disorder 












????
Disorder confidence 
















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2yhs chain A

3D model

Region: 188 - 494
Aligned: 307
Modelled: 307
Confidence: 100.0%
Identity: 100%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy

Phyre2

PDB 3dm5 chain A

3D model

Region: 203 - 497
Aligned: 288
Modelled: 295
Confidence: 100.0%
Identity: 34%
PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.

Phyre2

PDB 2j37 chain W

3D model

Region: 210 - 497
Aligned: 280
Modelled: 288
Confidence: 100.0%
Identity: 30%
PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs

Phyre2

PDB 2iy3 chain A

3D model

Region: 203 - 497
Aligned: 287
Modelled: 295
Confidence: 100.0%
Identity: 36%
PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome

Phyre2

PDB 2qy9 chain A

3D model

Region: 196 - 495
Aligned: 300
Modelled: 300
Confidence: 100.0%
Identity: 100%
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy

Phyre2

PDB 2j28 chain 9

3D model

Region: 203 - 497
Aligned: 289
Modelled: 294
Confidence: 100.0%
Identity: 31%
PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs

Phyre2

PDB 1qzw chain C

3D model

Region: 206 - 497
Aligned: 286
Modelled: 292
Confidence: 100.0%
Identity: 33%
PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication

Phyre2

PDB 3b9q chain A

3D model

Region: 197 - 493
Aligned: 296
Modelled: 297
Confidence: 100.0%
Identity: 41%
PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana

Phyre2

PDB 2v3c chain C

3D model

Region: 203 - 497
Aligned: 287
Modelled: 289
Confidence: 100.0%
Identity: 37%
PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii

Phyre2

PDB 2og2 chain A

3D model

Region: 194 - 493
Aligned: 299
Modelled: 300
Confidence: 100.0%
Identity: 41%
PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana

Phyre2

PDB 1vma chain A

3D model

Region: 193 - 495
Aligned: 294
Modelled: 302
Confidence: 100.0%
Identity: 56%
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution

Phyre2

PDB 1zu4 chain A

3D model

Region: 199 - 495
Aligned: 295
Modelled: 297
Confidence: 100.0%
Identity: 39%
PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212

Phyre2

PDB 1j8y chain F

3D model

Region: 203 - 494
Aligned: 282
Modelled: 292
Confidence: 100.0%
Identity: 34%
PDB header:signaling protein
Chain: F: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant

Phyre2

PDB 3dmd chain A

3D model

Region: 194 - 494
Aligned: 295
Modelled: 301
Confidence: 100.0%
Identity: 41%
PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus

Phyre2

PDB 2j7p chain A

3D model

Region: 206 - 495
Aligned: 282
Modelled: 290
Confidence: 100.0%
Identity: 36%
PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy

Phyre2

PDB 2cnw chain F

3D model

Region: 225 - 493
Aligned: 256
Modelled: 269
Confidence: 100.0%
Identity: 52%
PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy

Phyre2

PDB 2px0 chain D

3D model

Region: 226 - 493
Aligned: 254
Modelled: 266
Confidence: 100.0%
Identity: 22%
PDB header:biosynthetic protein
Chain: D: PDB Molecule:flagellar biosynthesis protein flhf;
PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)

Phyre2

PDB 1j8y chain F domain 2

3D model

Region: 283 - 495
Aligned: 203
Modelled: 213
Confidence: 100.0%
Identity: 40%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1vma chain A domain 2

3D model

Region: 283 - 495
Aligned: 213
Modelled: 213
Confidence: 100.0%
Identity: 60%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 2qy9 chain A domain 2

3D model

Region: 285 - 495
Aligned: 211
Modelled: 211
Confidence: 100.0%
Identity: 100%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
1

c2yhsA_
2

c3dm5A_
3

c2j37W_
4

c2iy3A_
5

c2qy9A_
6

c2j289_
7

c1qzwC_
8

c3b9qA_
9

c2v3cC_
10

c2og2A_
11

c1vmaA_
12

c1zu4A_
13

c1j8yF_
14

c3dmdA_
15

c2j7pA_
16

c2cnwF_
17

c2px0D_
18

d1j8yf2
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d1vmaa2
20

d2qy9a2
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2yhsA_



100.0 100 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
2c3dm5A_



100.0 34 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
3c2j37W_



100.0 30 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
4c2iy3A_



100.0 36 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
5c2qy9A_



100.0 100 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
6c2j289_



100.0 31 PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
7c1qzwC_



100.0 33 PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
8c3b9qA_



100.0 41 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
9c2v3cC_



100.0 37 PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
10c2og2A_



100.0 41 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
11c1vmaA_



100.0 56 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
12c1zu4A_



100.0 39 PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
13c1j8yF_



100.0 34 PDB header:signaling protein
Chain: F: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant
14c3dmdA_



100.0 41 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
15c2j7pA_



100.0 36 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
16c2cnwF_



100.0 52 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
17c2px0D_



100.0 22 PDB header:biosynthetic protein
Chain: D: PDB Molecule:flagellar biosynthesis protein flhf;
PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
18d1j8yf2



100.0 40 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
19d1vmaa2



100.0 60 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
20d2qy9a2



100.0 100 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
21d1qzxa3



not modelled 100.0 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
22d1ls1a2



not modelled 100.0 40 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
23d1okkd2



not modelled 100.0 56 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
24d1nija1



not modelled 99.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
25d2qm8a1



not modelled 99.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
26c3nxsA_



not modelled 99.3 19 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
27c2wwwB_



not modelled 99.2 17 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
28d2p67a1



not modelled 99.2 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
29c3cioA_



not modelled 99.2 16 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:tyrosine-protein kinase etk;
PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk
30c3of5A_



not modelled 99.1 18 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of a dethiobiotin synthetase from francisella2 tularensis subsp. tularensis schu s4
31d2qy9a1



not modelled 99.1 100 Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
32c2vedA_



not modelled 99.1 22 PDB header:transferase
Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase;
PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein
33c3la6P_



not modelled 98.9 21 PDB header:transferase
Chain: P: PDB Molecule:tyrosine-protein kinase wzc;
PDBTitle: octameric kinase domain of the e. coli tyrosine kinase wzc with bound2 adp
34d1vmaa1



not modelled 98.9 43 Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
35c3zq6D_



not modelled 98.9 17 PDB header:hydrolase
Chain: D: PDB Molecule:putative arsenical pump-driving atpase;
PDBTitle: adp-alf4 complex of m. therm. trc40
36d2afhe1



not modelled 98.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
37d1ihua2



not modelled 98.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
38d1cp2a_



not modelled 98.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
39c3k9gA_



not modelled 98.8 18 PDB header:biosynthetic protein
Chain: A: PDB Molecule:pf-32 protein;
PDBTitle: crystal structure of a plasmid partition protein from borrelia2 burgdorferi at 2.25a resolution, iodide soak
40c3ibgF_



not modelled 98.8 24 PDB header:hydrolase
Chain: F: PDB Molecule:atpase, subunit of the get complex;
PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
41c2wooC_



not modelled 98.8 22 PDB header:hydrolase
Chain: C: PDB Molecule:atpase get3;
PDBTitle: nucleotide-free form of s. pombe get3
42c3io3A_



not modelled 98.8 16 PDB header:chaperone
Chain: A: PDB Molecule:deha2d07832p;
PDBTitle: get3 with adp from d. hansenii in closed form
43c1ii0A_



not modelled 98.8 23 PDB header:hydrolase
Chain: A: PDB Molecule:arsenical pump-driving atpase;
PDBTitle: crystal structure of the escherichia coli arsenite-translocating2 atpase
44c2ozeA_



not modelled 98.8 18 PDB header:dna binding protein
Chain: A: PDB Molecule:orf delta';
PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes
45c3ug7D_



not modelled 98.8 15 PDB header:hydrolase
Chain: D: PDB Molecule:arsenical pump-driving atpase;
PDBTitle: crystal structure of get3 from methanocaldococcus jannaschii
46c2f1rA_



not modelled 98.8 18 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
47c2qmoA_



not modelled 98.8 17 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of dethiobiotin synthetase (biod) from helicobacter2 pylori
48c2wojD_



not modelled 98.7 16 PDB header:hydrolase
Chain: D: PDB Molecule:atpase get3;
PDBTitle: adp-alf4 complex of s. cerevisiae get3
49c3igfB_



not modelled 98.7 17 PDB header:atp binding protein
Chain: B: PDB Molecule:all4481 protein;
PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300
50c2hf9A_



not modelled 98.7 18 PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form
51c2ph1A_



not modelled 98.7 21 PDB header:ligand binding protein
Chain: A: PDB Molecule:nucleotide-binding protein;
PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165
52c3fkqA_



not modelled 98.7 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution
53d1byia_



not modelled 98.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
54c3md0A_



not modelled 98.7 17 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
55c3endA_



not modelled 98.6 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase
PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein
56c3fmfA_



not modelled 98.6 22 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
57d1g3qa_



not modelled 98.6 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
58c3ea0B_



not modelled 98.6 19 PDB header:hydrolase
Chain: B: PDB Molecule:atpase, para family;
PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls
59c3kjgB_



not modelled 98.6 20 PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1
60c2xj9B_



not modelled 98.6 18 PDB header:replication
Chain: B: PDB Molecule:mipz;
PDBTitle: dimer structure of the bacterial cell division regulator mipz
61d1hyqa_



not modelled 98.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
62c1hyqA_



not modelled 98.6 18 PDB header:cell cycle
Chain: A: PDB Molecule:cell division inhibitor (mind-1);
PDBTitle: mind bacterial cell division regulator from a. fulgidus
63d1iona_



not modelled 98.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
64d1yrba1



not modelled 98.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
65d1bifa1



not modelled 98.5 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
66c2p5tD_



not modelled 98.5 20 PDB header:transcription regulator
Chain: D: PDB Molecule:pezt;
PDBTitle: molecular and structural characterization of the pezat chromosomal2 toxin-antitoxin system of the human pathogen streptococcus pneumoniae
67c3cwqB_



not modelled 98.5 23 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:para family chromosome partitioning protein;
PDBTitle: crystal structure of chromosome partitioning protein (para) in complex2 with adp from synechocystis sp. northeast structural genomics3 consortium target sgr89
68d1ihua1



not modelled 98.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
69c1k6mA_



not modelled 98.5 16 PDB header:transferase, hydrolase
Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-
PDBTitle: crystal structure of human liver 6-phosphofructo-2-2 kinase/fructose-2,6-bisphosphatase
70c1bifA_



not modelled 98.4 15 PDB header:bifunctional enzyme
Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase;
PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate
71c1xzqA_



not modelled 98.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
72c2e87A_



not modelled 98.4 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
73d1mo6a1



not modelled 98.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
74c3ez6B_



not modelled 98.4 14 PDB header:dna binding protein
Chain: B: PDB Molecule:plasmid partition protein a;
PDBTitle: structure of para-adp complex:tetragonal form
75c3q9lB_



not modelled 98.4 17 PDB header:cell cycle, hydrolase
Chain: B: PDB Molecule:septum site-determining protein mind;
PDBTitle: the structure of the dimeric e.coli mind-atp complex
76c2q6tB_



not modelled 98.4 14 PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
77c1nijA_



not modelled 98.4 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
78c1xp8A_



not modelled 98.4 13 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
79c2i1vB_



not modelled 98.4 18 PDB header:transferase, hydrolase
Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-
PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate
80c2vyeA_



not modelled 98.3 15 PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
81c2recB_



not modelled 98.3 20 PDB header:helicase
PDB COMPND:
82c2bekB_



not modelled 98.3 21 PDB header:chromosome segregation
Chain: B: PDB Molecule:segregation protein;
PDBTitle: structure of the bacterial chromosome segregation protein2 soj
83d1tf7a2



not modelled 98.3 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
84d1k6ma1



not modelled 98.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
85d1ubea1



not modelled 98.2 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
86d1u94a1



not modelled 98.2 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
87d1xp8a1



not modelled 98.2 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
88c2hjgA_



not modelled 98.2 22 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
89d1cr2a_



not modelled 98.2 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
90c1d2eA_



not modelled 98.2 31 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
91c2xzlA_



not modelled 98.2 24 PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent helicase nam7;
PDBTitle: upf1-rna complex
92c3hr8A_



not modelled 98.2 11 PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
93c3p1jC_



not modelled 98.2 24 PDB header:hydrolase
Chain: C: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
94c2j3eA_



not modelled 98.2 16 PDB header:protein transport
Chain: A: PDB Molecule:t7i23.11 protein;
PDBTitle: dimerization is important for the gtpase activity of2 chloroplast translocon components attoc33 and pstoc159
95d1h65a_



not modelled 98.2 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
96c2wjyA_



not modelled 98.2 21 PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
97c1u9iA_



not modelled 98.2 15 PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
98c2zroA_



not modelled 98.2 14 PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
99d1ls1a1



not modelled 98.1 26 Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
100c3i8sC_



not modelled 98.1 17 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
101c1egaB_



not modelled 98.1 16 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
102d1qvra3



not modelled 98.1 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
103d1gvnb_



not modelled 98.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Plasmid maintenance system epsilon/zeta, toxin zeta subunit
104c2xtpA_



not modelled 98.1 21 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
105c1mkyA_



not modelled 98.1 23 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
106c3pg5A_



not modelled 98.1 28 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein dip2308 from corynebacterium diphtheriae,2 northeast structural genomics consortium target cdr78
107c1zunB_



not modelled 98.0 23 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
108c2bvnB_



not modelled 98.0 21 PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia
109c2w0mA_



not modelled 98.0 13 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
110c3pxiB_



not modelled 98.0 12 PDB header:protein binding
Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb;
PDBTitle: structure of meca108:clpc
111c3bh0A_



not modelled 98.0 17 PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
112c3bgwD_



not modelled 98.0 19 PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
113c3gehA_



not modelled 98.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
114d1n0wa_



not modelled 98.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
115d1xjca_



not modelled 98.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
116c1xx6B_



not modelled 98.0 15 PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26.
117c2ywfA_



not modelled 98.0 21 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
118c3ec2A_



not modelled 98.0 16 PDB header:replication
Chain: A: PDB Molecule:dna replication protein dnac;
PDBTitle: crystal structure of the dnac helicase loader
119c3lxwA_



not modelled 98.0 18 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
120d1x6va3



not modelled 98.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Adenosine-5'phosphosulfate kinase (APS kinase)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0