 |
| Job Description | P10121 | | Confidence | 97.81% | Date | Thu Jan 5 11:32:03 GMT 2012 |
| Rank | 168 | Aligned Residues | 116 |
| % Identity | 20% | Template | c1cu1B_ |
| PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:protein (protease/helicase ns3); |
PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus
|
| Resolution | 2.50 Å |
|
 |
|   |   |
290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 350 | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
| Query Sequence |   |
G | K | A | P | F | V | I | L | M | V | G | V | N | G | V | G | K | T | T | T | I | G | K | L | A | R | Q | F | E | Q | Q | G | K | S | V | M | L | A | A | G | D | T | F | R | A | A | A | V | E | Q | L | Q | V | W | G | Q | R | N | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | P | V | I | A | Q |
| Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|   |   |
|   |
|
|   |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|   |   |
|
|   |   |
|   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|   |   |   |
|   |
|   |   |   |
| Template Sequence |   |
P | Q | S | F | Q | V | A | H | L | H | A | P | T | G | S | G | K | S | T | . |
. |
. |
K | V | P | A | A | Y | A | A | Q | G | Y | K | V | L | V | L | N | . |
. |
P | S | V | A | A | T | L | G | F | G | A | Y | M | S | K | A | H | G | I | D | P | N | I | R | T | G | V | R | T | I | T | T | G | A | P | V | T | Y | S |
| Template Known Secondary structure |   |
| S | S |
|  |  |  |  |  |  |
|
| T | T | S |
| T | T | T | . | . | . |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  | . | . | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
| S | S |
|  |  |
|
|
|
| S |  |  |  |  |
| Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  | . | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
1194 | . | . | . | . | . | 1200 | . | . | . | . | . | . | . | . | . | 1210 | . | . | |
|
|
. | . | . | . | . | . | . | 1220 | . | . | . | . | . | . | . | . | . | |
|
1230 | . | . | . | . | . | . | . | . | . | 1240 | . | . | . | . | . | . | . | . | . | 1250 | . | . | . | . | . | . | . | . | . | 1260 | . | . | . | . | . | . | . | . |
|   |
|   |   |
355 | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . |
| Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
H | T | G | A | D | S | A | S | V | I | F | D | A | I | Q | A | A | K | A | R | N | I | D | V | L | I | A | D | T | A | G | R | L | Q | N | K | S | H | L | M | E | E | L | K | K | I | V | R | V | M | K | K | L | D | V | E | A | P | H | E | V | M | L | T | I | D | A | S |
| Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|   |
|
|   |   |   |   |   | . | . | . | . | . | . |   |
|   |   |   |
|   |
|
|
|
|
|
| . | . |
|
|
|
|   |   |
|
|
|
|
|
|
|
|   |   |
|   |   |   |
| . | . | . | . |   |   |
|
|
|
|
|
|
|
|
|
| Template Sequence |   |
T | Y | G | K | F | L | A | D | G | G | C | . |
. |
. |
. |
. |
. |
S | G | G | A | Y | D | I | I | I | C | D | E | C | . |
. |
H | S | T | D | S | T | T | I | L | G | I | G | T | V | L | D | Q | A | E | T | A | . |
. |
. |
. |
G | A | R | L | V | V | L | A | T | A | T |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | S |
| . | . | . | . | . | . |
| T | T | S |
| S |  |  |  |  | T | T | T | . | . | T |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | . | . | . | . | T |
| S |  |  |  |  |  |  | S | S |
| Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |
|
| . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
1269 | 1270 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
1280 | . | . | . | . | . | . | . | . | . | 1290 | . | . | |
|
. | . | . | . | . | . | . | 1300 | . | . | . | . | . | . | . | . | . | 1310 | . | . | . | |
|
|
|
. | . | . | . | . | . | 1320 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|