Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	K	I	V	I	L	P	H	Q	D	L	C	P	D	G	A	V	L	E	A	N	S	G	E	T	I	L	D	A	A	L	R	N	G	I	E	I	E	H	A	C	E	K	S	C	A	C	T	T	C	H	C	I	V	R	E	G	F	D
Secondary structure
SS confidence
Disorder		?	?								?																																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Sequence		S	L	P	E	S	S	E	Q	E	D	D	M	L	D	K	A	W	G	L	E	P	E	S	R	L	S	C	Q	A	R	V	T	D	E	D	L	V	V	E	I	P	R	Y	T	I	N	H	A	R	E	H
Secondary structure
SS confidence
Disorder			?	?	?	?	?													?	?																													?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1i7h chain A Region: 2 - 110 Aligned: 109 Modelled: 109 Confidence: 100.0% Identity: 100% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 3ah7 chain A Region: 1 - 108 Aligned: 108 Modelled: 108 Confidence: 100.0% Identity: 58% PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004 Phyre2 PDB 3hui chain A Region: 1 - 105 Aligned: 102 Modelled: 105 Confidence: 99.9% Identity: 38% PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris Phyre2 PDB 2wlb chain B Region: 3 - 101 Aligned: 96 Modelled: 99 Confidence: 99.9% Identity: 45% PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria Phyre2 PDB 3lxf chain C Region: 3 - 103 Aligned: 98 Modelled: 101 Confidence: 99.9% Identity: 36% PDB header:metal binding protein Chain: C: PDB Molecule:ferredoxin; PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans Phyre2 PDB 2bt6 chain A domain 1 Region: 3 - 101 Aligned: 96 Modelled: 99 Confidence: 99.9% Identity: 33% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1b9r chain A Region: 2 - 101 Aligned: 97 Modelled: 100 Confidence: 99.9% Identity: 28% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1xlq chain A domain 1 Region: 2 - 103 Aligned: 99 Modelled: 99 Confidence: 99.9% Identity: 36% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1e9m chain A Region: 2 - 103 Aligned: 99 Modelled: 102 Confidence: 99.9% Identity: 37% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1l6v chain A Region: 3 - 102 Aligned: 97 Modelled: 100 Confidence: 99.8% Identity: 33% PDB header:electron transport Chain: A: PDB Molecule:adrenodoxin 1; PDBTitle: structure of reduced bovine adrenodoxin Phyre2 PDB 1l5p chain A Region: 3 - 100 Aligned: 87 Modelled: 97 Confidence: 99.8% Identity: 21% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1krh chain A domain 3 Region: 3 - 104 Aligned: 95 Modelled: 95 Confidence: 99.8% Identity: 24% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1iue chain A Region: 1 - 107 Aligned: 95 Modelled: 107 Confidence: 99.8% Identity: 25% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1krh chain A Region: 2 - 101 Aligned: 93 Modelled: 95 Confidence: 99.8% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase Phyre2 PDB 1fxi chain A Region: 3 - 103 Aligned: 89 Modelled: 101 Confidence: 99.8% Identity: 26% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1jq4 chain A Region: 1 - 101 Aligned: 92 Modelled: 98 Confidence: 99.8% Identity: 27% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1pfd chain A Region: 3 - 105 Aligned: 91 Modelled: 103 Confidence: 99.7% Identity: 22% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1frr chain A Region: 3 - 103 Aligned: 89 Modelled: 101 Confidence: 99.7% Identity: 31% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 4fxc chain A Region: 1 - 103 Aligned: 93 Modelled: 103 Confidence: 99.7% Identity: 22% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 PDB 1czp chain A Region: 3 - 103 Aligned: 91 Modelled: 95 Confidence: 99.7% Identity: 27% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 1 d1i7ha_ 2 c3ah7A_ 3 c3huiA_ 4 c2wlbB_ 5 c3lxfC_ 6 d2bt6a1 7 d1b9ra_ 8 d1xlqa1 9 d1e9ma_ 10 c1l6vA_ 11 d1l5pa_ 12 d1krha3 13 d1iuea_ 14 c1krhA_ 15 d1fxia_ 16 d1jq4a_ 17 d1pfda_ 18 d1frra_ 19 d4fxca_ 20 d1czpa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1i7ha_ 100.0 100 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 2 c3ah7A_ 100.0 58 PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004 3 c3huiA_ 99.9 38 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris 4 c2wlbB_ 99.9 45 PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria 5 c3lxfC_ 99.9 36 PDB header:metal binding protein Chain: C: PDB Molecule:ferredoxin; PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans 6 d2bt6a1 99.9 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 7 d1b9ra_ 99.9 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 8 d1xlqa1 99.9 36 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 9 d1e9ma_ 99.9 37 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 10 c1l6vA_ 99.8 33 PDB header:electron transport Chain: A: PDB Molecule:adrenodoxin 1; PDBTitle: structure of reduced bovine adrenodoxin 11 d1l5pa_ 99.8 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 12 d1krha3 99.8 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 13 d1iuea_ 99.8 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 14 c1krhA_ 99.8 29 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 15 d1fxia_ 99.8 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 16 d1jq4a_ 99.8 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 17 d1pfda_ 99.7 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 18 d1frra_ 99.7 31 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 19 d4fxca_ 99.7 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 20 d1czpa_ 99.7 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 21 d1offa_ not modelled 99.7 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 22 d1frda_ not modelled 99.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 23 d1awda_ not modelled 99.7 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 24 d1a70a_ not modelled 99.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 25 d2cjoa_ not modelled 99.7 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 26 d1gaqb_ not modelled 99.7 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 27 d1wria_ not modelled 99.7 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 28 d2piaa3 not modelled 99.6 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 29 d1doia_ not modelled 99.6 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 30 d1e0za_ not modelled 99.5 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 31 c2piaA_ not modelled 99.4 20 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 32 d2fug33 not modelled 99.1 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 33 d3c8ya2 not modelled 99.0 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 34 c1c4cA_ not modelled 98.8 23 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 35 c2fugC_ not modelled 98.7 24 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 36 d1vlba2 not modelled 98.1 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 37 d1dgja2 not modelled 98.0 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 38 d1t3qa2 not modelled 97.8 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 39 d1n62a2 not modelled 97.5 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 40 c1t3qD_ not modelled 97.5 14 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 41 c3hrdH_ not modelled 97.3 21 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 42 c1n60D_ not modelled 97.2 10 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 43 d1ffva2 not modelled 97.2 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 44 d1rm6c2 not modelled 97.2 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 45 c1rm6F_ not modelled 97.1 16 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 46 c1ffuA_ not modelled 96.9 8 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 47 c2h89B_ not modelled 96.6 27 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 48 d1jroa2 not modelled 96.5 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 49 d1v97a2 not modelled 96.4 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 50 c2w3rG_ not modelled 96.3 12 PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine 51 d2bs2b2 not modelled 96.3 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 52 c3eubJ_ not modelled 96.2 18 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 53 d1kf6b2 not modelled 96.2 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 54 c3b9jI_ not modelled 96.2 18 PDB header:oxidoreductase Chain: I: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 55 c2bs2E_ not modelled 96.1 16 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 56 c2b76N_ not modelled 96.1 19 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 57 c1dgjA_ not modelled 96.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774 58 c1vlbA_ not modelled 96.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a 59 c1nekB_ not modelled 94.5 23 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 60 d1nekb2 not modelled 94.0 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 61 c1wygA_ not modelled 91.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 62 c1x31A_ not modelled 91.6 23 PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 63 c1y56A_ not modelled 91.3 28 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1363; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii 64 d1tkea1 not modelled 89.9 42 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 65 c1tkeA_ not modelled 84.9 42 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine 66 c1ep3B_ not modelled 80.4 24 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. 67 d1ep3b2 not modelled 80.4 24 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Dihydroorotate dehydrogenase B, PyrK subunit 68 c2kmmA_ not modelled 57.1 26 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 69 c3hvzB_ not modelled 52.6 32 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 70 c3na0C_ not modelled 45.9 60 PDB header:oxidoreductase, electron transport Chain: C: PDB Molecule:adrenodoxin, mitochondrial; PDBTitle: crystal structure of human cyp11a1 in complex with 20,22-2 dihydroxycholesterol 71 c1rrbA_ not modelled 41.3 18 PDB header:transferase Chain: A: PDB Molecule:raf proto-oncogene serine/threonine-protein PDBTitle: the ras-binding domain of raf-1 from rat, nmr, 1 structure 72 c1qf6A_ not modelled 38.6 40 PDB header:ligase/rna Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna 73 c2l05A_ not modelled 38.0 26 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase b-raf; PDBTitle: solution nmr structure of the ras-binding domain of serine/threonine-2 protein kinase b-raf from homo sapiens, northeast structural genomics3 consortium target hr4694f 74 d1c1yb_ not modelled 35.7 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 75 d1nyra2 not modelled 32.8 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 76 d1e0ga_ not modelled 29.8 25 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 77 c1wwtA_ not modelled 26.1 30 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 78 d1zud21 not modelled 24.5 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 79 d1wxma1 not modelled 23.9 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 80 c1nyqA_ not modelled 21.2 33 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase 1; PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate 81 c2hj1A_ not modelled 19.8 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 82 d2hj1a1 not modelled 19.8 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 83 c3c75L_ not modelled 18.7 28 PDB header:oxidoreductase Chain: L: PDB Molecule:methylamine dehydrogenase light chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 84 d2bbkl_ not modelled 18.5 28 Fold:Methylamine dehydrogenase, L chain Superfamily:Methylamine dehydrogenase, L chain Family:Methylamine dehydrogenase, L chain 85 d1mdal_ not modelled 18.3 28 Fold:Methylamine dehydrogenase, L chain Superfamily:Methylamine dehydrogenase, L chain Family:Methylamine dehydrogenase, L chain 86 d1rwsa_ not modelled 18.3 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 87 d1y7ma2 not modelled 17.2 19 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 88 c2iurD_ not modelled 13.8 28 PDB header:oxidoreductase Chain: D: PDB Molecule:aromatic amine dehydrogenase beta subunit; PDBTitle: crystal structure of n-quinol form of aromatic amine2 dehydrogenase (aadh) from alcaligenes faecalis, form a3 cocrystal 89 c3bw7A_ not modelled 13.5 21 PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 1; PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1 90 c2g1eA_ not modelled 11.8 12 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 91 c2po8A_ not modelled 11.4 22 PDB header:plant protein Chain: A: PDB Molecule:mcoti-ii; PDBTitle: the structure of a two-disulfide intermediate of mcoti-ii 92 c2c1dB_ not modelled 11.2 33 PDB header:oxidoreductase Chain: B: PDB Molecule:soxx; PDBTitle: crystal structure of soxxa from p. pantotrophus 93 d1rutx4 not modelled 11.1 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 94 c1y7mB_ not modelled 10.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution 95 d1iqca1 not modelled 10.0 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 96 c2it8A_ not modelled 9.9 25 PDB header:plant protein Chain: A: PDB Molecule:trypsin inhibitor 2; PDBTitle: solution structure of a linear analog of the cyclic squash2 trypsin inhibitor mcoti-ii 97 d2it8a1 not modelled 9.9 25 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Plant inhibitors of proteinases and amylases Family:Plant inhibitors of proteinases and amylases 98 d2al3a1 not modelled 9.7 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 99 d1eb7a1 not modelled 9.2 44 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0