Phyre 2 Results for P0A9R4

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0A9R4
Date | Thu Jan 5 11:11:04 GMT 2012
Unique Job ID | 98d03a314aee974f

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1i7ha_
Top template information
Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
Confidence and coverage
Confidence: | 100.0% | Coverage: | 98%
109 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | P | K | I | V | I | L | P | H | Q | D | L | C | P | D | G | A | V | L | E | A | N | S | G | E | T | I | L | D | A | A | L | R | N | G | I | E | I | E | H | A | C | E | K | S | C | A | C | T | T | C | H | C | I | V | R | E | G | F | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | .
Sequence |  | S | L | P | E | S | S | E | Q | E | D | D | M | L | D | K | A | W | G | L | E | P | E | S | R | L | S | C | Q | A | R | V | T | D | E | D | L | V | V | E | I | P | R | Y | T | I | N | H | A | R | E | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1i7ha_ |

### PDB 1i7h chain A

Region: 2 - 110
Aligned: 109
Modelled: 109
Confidence: 100.0%
Identity: 100%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
2 |
| c3ah7A_ |

### PDB 3ah7 chain A

Region: 1 - 108
Aligned: 108
Modelled: 108
Confidence: 100.0%
Identity: 58%
PDB header:metal binding protein
Chain: A: PDB Molecule:[2fe-2s]ferredoxin;
PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004

Phyre2
3 |
| c3huiA_ |

### PDB 3hui chain A

Region: 1 - 105
Aligned: 102
Modelled: 105
Confidence: 99.9%
Identity: 38%
PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris

Phyre2
4 |
| c2wlbB_ |

### PDB 2wlb chain B

Region: 3 - 101
Aligned: 96
Modelled: 99
Confidence: 99.9%
Identity: 45%
PDB header:electron transport
Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial;
PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria

Phyre2
5 |
| c3lxfC_ |

### PDB 3lxf chain C

Region: 3 - 103
Aligned: 98
Modelled: 101
Confidence: 99.9%
Identity: 36%
PDB header:metal binding protein
Chain: C: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans

Phyre2
6 |
| d2bt6a1 |

### PDB 2bt6 chain A domain 1

Region: 3 - 101
Aligned: 96
Modelled: 99
Confidence: 99.9%
Identity: 33%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
7 |
| d1b9ra_ |

### PDB 1b9r chain A

Region: 2 - 101
Aligned: 97
Modelled: 100
Confidence: 99.9%
Identity: 28%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
8 |
| d1xlqa1 |

### PDB 1xlq chain A domain 1

Region: 2 - 103
Aligned: 99
Modelled: 99
Confidence: 99.9%
Identity: 36%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
9 |
| d1e9ma_ |

### PDB 1e9m chain A

Region: 2 - 103
Aligned: 99
Modelled: 102
Confidence: 99.9%
Identity: 37%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
10 |
| c1l6vA_ |

### PDB 1l6v chain A

Region: 3 - 102
Aligned: 97
Modelled: 100
Confidence: 99.8%
Identity: 33%
PDB header:electron transport
Chain: A: PDB Molecule:adrenodoxin 1;
PDBTitle: structure of reduced bovine adrenodoxin

Phyre2
11 |
| d1l5pa_ |

### PDB 1l5p chain A

Region: 3 - 100
Aligned: 87
Modelled: 97
Confidence: 99.8%
Identity: 21%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
12 |
| d1krha3 |

### PDB 1krh chain A domain 3

Region: 3 - 104
Aligned: 95
Modelled: 95
Confidence: 99.8%
Identity: 24%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin domains from multidomain proteins

Phyre2
13 |
| d1iuea_ |

### PDB 1iue chain A

Region: 1 - 107
Aligned: 95
Modelled: 107
Confidence: 99.8%
Identity: 25%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
14 |
| c1krhA_ |

### PDB 1krh chain A

Region: 2 - 101
Aligned: 93
Modelled: 95
Confidence: 99.8%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase;
PDBTitle: x-ray stucture of benzoate dioxygenase reductase

Phyre2
15 |
| d1fxia_ |

### PDB 1fxi chain A

Region: 3 - 103
Aligned: 89
Modelled: 101
Confidence: 99.8%
Identity: 26%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
16 |
| d1jq4a_ |

### PDB 1jq4 chain A

Region: 1 - 101
Aligned: 92
Modelled: 98
Confidence: 99.8%
Identity: 27%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin domains from multidomain proteins

Phyre2
17 |
| d1pfda_ |

### PDB 1pfd chain A

Region: 3 - 105
Aligned: 91
Modelled: 103
Confidence: 99.7%
Identity: 22%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
18 |
| d1frra_ |

### PDB 1frr chain A

Region: 3 - 103
Aligned: 89
Modelled: 101
Confidence: 99.7%
Identity: 31%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
19 |
| d4fxca_ |

### PDB 4fxc chain A

Region: 1 - 103
Aligned: 93
Modelled: 103
Confidence: 99.7%
Identity: 22%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
20 |
| d1czpa_ |

### PDB 1czp chain A

Region: 3 - 103
Aligned: 91
Modelled: 95
Confidence: 99.7%
Identity: 27%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin-related

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1i7ha_ |
|  | 100.0 | 100 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
2 | c3ah7A_ |
|  | 100.0 | 58 | PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004
3 | c3huiA_ |
|  | 99.9 | 38 | PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris
4 | c2wlbB_ |
|  | 99.9 | 45 | PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria
5 | c3lxfC_ |
|  | 99.9 | 36 | PDB header:metal binding protein Chain: C: PDB Molecule:ferredoxin; PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans
6 | d2bt6a1 |
|  | 99.9 | 33 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
7 | d1b9ra_ |
|  | 99.9 | 28 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
8 | d1xlqa1 |
|  | 99.9 | 36 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
9 | d1e9ma_ |
|  | 99.9 | 37 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
10 | c1l6vA_ |
|  | 99.8 | 33 | PDB header:electron transport Chain: A: PDB Molecule:adrenodoxin 1; PDBTitle: structure of reduced bovine adrenodoxin
11 | d1l5pa_ |
|  | 99.8 | 21 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
12 | d1krha3 |
|  | 99.8 | 24 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
13 | d1iuea_ |
|  | 99.8 | 25 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
14 | c1krhA_ |
|  | 99.8 | 29 | PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase
15 | d1fxia_ |
|  | 99.8 | 26 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
16 | d1jq4a_ |
|  | 99.8 | 27 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
17 | d1pfda_ |
|  | 99.7 | 22 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
18 | d1frra_ |
|  | 99.7 | 31 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
19 | d4fxca_ |
|  | 99.7 | 22 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
20 | d1czpa_ |
|  | 99.7 | 27 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
21 | d1offa_ |
| not modelled | 99.7 | 25 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
22 | d1frda_ |
| not modelled | 99.7 | 20 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
23 | d1awda_ |
| not modelled | 99.7 | 24 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
24 | d1a70a_ |
| not modelled | 99.7 | 20 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
25 | d2cjoa_ |
| not modelled | 99.7 | 21 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
26 | d1gaqb_ |
| not modelled | 99.7 | 22 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
27 | d1wria_ |
| not modelled | 99.7 | 22 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
28 | d2piaa3 |
| not modelled | 99.6 | 17 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
29 | d1doia_ |
| not modelled | 99.6 | 25 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
30 | d1e0za_ |
| not modelled | 99.5 | 27 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related
31 | c2piaA_ |
| not modelled | 99.4 | 20 | PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
32 | d2fug33 |
| not modelled | 99.1 | 23 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
33 | d3c8ya2 |
| not modelled | 99.0 | 25 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
34 | c1c4cA_ |
| not modelled | 98.8 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
35 | c2fugC_ |
| not modelled | 98.7 | 24 | PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
36 | d1vlba2 |
| not modelled | 98.1 | 18 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
37 | d1dgja2 |
| not modelled | 98.0 | 14 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
38 | d1t3qa2 |
| not modelled | 97.8 | 14 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
39 | d1n62a2 |
| not modelled | 97.5 | 10 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
40 | c1t3qD_ |
| not modelled | 97.5 | 14 | PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
41 | c3hrdH_ |
| not modelled | 97.3 | 21 | PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase
42 | c1n60D_ |
| not modelled | 97.2 | 10 | PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form
43 | d1ffva2 |
| not modelled | 97.2 | 8 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
44 | d1rm6c2 |
| not modelled | 97.2 | 16 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
45 | c1rm6F_ |
| not modelled | 97.1 | 16 | PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
46 | c1ffuA_ |
| not modelled | 96.9 | 8 | PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
47 | c2h89B_ |
| not modelled | 96.6 | 27 | PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound
48 | d1jroa2 |
| not modelled | 96.5 | 12 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
49 | d1v97a2 |
| not modelled | 96.4 | 18 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
50 | c2w3rG_ |
| not modelled | 96.3 | 12 | PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine
51 | d2bs2b2 |
| not modelled | 96.3 | 18 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
52 | c3eubJ_ |
| not modelled | 96.2 | 18 | PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
53 | d1kf6b2 |
| not modelled | 96.2 | 23 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
54 | c3b9jI_ |
| not modelled | 96.2 | 18 | PDB header:oxidoreductase Chain: I: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
55 | c2bs2E_ |
| not modelled | 96.1 | 16 | PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes
56 | c2b76N_ |
| not modelled | 96.1 | 19 | PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
57 | c1dgjA_ |
| not modelled | 96.1 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774
58 | c1vlbA_ |
| not modelled | 96.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
59 | c1nekB_ |
| not modelled | 94.5 | 23 | PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
60 | d1nekb2 |
| not modelled | 94.0 | 18 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
61 | c1wygA_ |
| not modelled | 91.9 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
62 | c1x31A_ |
| not modelled | 91.6 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
63 | c1y56A_ |
| not modelled | 91.3 | 28 | PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1363; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
64 | d1tkea1 |
| not modelled | 89.9 | 42 | Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain
65 | c1tkeA_ |
| not modelled | 84.9 | 42 | PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine
66 | c1ep3B_ |
| not modelled | 80.4 | 24 | PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.
67 | d1ep3b2 |
| not modelled | 80.4 | 24 | Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Dihydroorotate dehydrogenase B, PyrK subunit
68 | c2kmmA_ |
| not modelled | 57.1 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481)
69 | c3hvzB_ |
| not modelled | 52.6 | 32 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a
70 | c3na0C_ |
| not modelled | 45.9 | 60 | PDB header:oxidoreductase, electron transport Chain: C: PDB Molecule:adrenodoxin, mitochondrial; PDBTitle: crystal structure of human cyp11a1 in complex with 20,22-2 dihydroxycholesterol
71 | c1rrbA_ |
| not modelled | 41.3 | 18 | PDB header:transferase Chain: A: PDB Molecule:raf proto-oncogene serine/threonine-protein PDBTitle: the ras-binding domain of raf-1 from rat, nmr, 1 structure
72 | c1qf6A_ |
| not modelled | 38.6 | 40 | PDB header:ligase/rna Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna
73 | c2l05A_ |
| not modelled | 38.0 | 26 | PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase b-raf; PDBTitle: solution nmr structure of the ras-binding domain of serine/threonine-2 protein kinase b-raf from homo sapiens, northeast structural genomics3 consortium target hr4694f
74 | d1c1yb_ |
| not modelled | 35.7 | 17 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD
75 | d1nyra2 |
| not modelled | 32.8 | 21 | Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain
76 | d1e0ga_ |
| not modelled | 29.8 | 25 | Fold:LysM domain Superfamily:LysM domain Family:LysM domain
77 | c1wwtA_ |
| not modelled | 26.1 | 30 | PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase
78 | d1zud21 |
| not modelled | 24.5 | 11 | Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS
79 | d1wxma1 |
| not modelled | 23.9 | 18 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD
80 | c1nyqA_ |
| not modelled | 21.2 | 33 | PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase 1; PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate
81 | c2hj1A_ |
| not modelled | 19.8 | 25 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae
82 | d2hj1a1 |
| not modelled | 19.8 | 25 | Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like
83 | c3c75L_ |
| not modelled | 18.7 | 28 | PDB header:oxidoreductase Chain: L: PDB Molecule:methylamine dehydrogenase light chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin
84 | d2bbkl_ |
| not modelled | 18.5 | 28 | Fold:Methylamine dehydrogenase, L chain Superfamily:Methylamine dehydrogenase, L chain Family:Methylamine dehydrogenase, L chain
85 | d1mdal_ |
| not modelled | 18.3 | 28 | Fold:Methylamine dehydrogenase, L chain Superfamily:Methylamine dehydrogenase, L chain Family:Methylamine dehydrogenase, L chain
86 | d1rwsa_ |
| not modelled | 18.3 | 22 | Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS
87 | d1y7ma2 |
| not modelled | 17.2 | 19 | Fold:LysM domain Superfamily:LysM domain Family:LysM domain
88 | c2iurD_ |
| not modelled | 13.8 | 28 | PDB header:oxidoreductase Chain: D: PDB Molecule:aromatic amine dehydrogenase beta subunit; PDBTitle: crystal structure of n-quinol form of aromatic amine2 dehydrogenase (aadh) from alcaligenes faecalis, form a3 cocrystal
89 | c3bw7A_ |
| not modelled | 13.5 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 1; PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1
90 | c2g1eA_ |
| not modelled | 11.8 | 12 | PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895
91 | c2po8A_ |
| not modelled | 11.4 | 22 | PDB header:plant protein Chain: A: PDB Molecule:mcoti-ii; PDBTitle: the structure of a two-disulfide intermediate of mcoti-ii
92 | c2c1dB_ |
| not modelled | 11.2 | 33 | PDB header:oxidoreductase Chain: B: PDB Molecule:soxx; PDBTitle: crystal structure of soxxa from p. pantotrophus
93 | d1rutx4 |
| not modelled | 11.1 | 33 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
94 | c1y7mB_ |
| not modelled | 10.8 | 19 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14040; PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution
95 | d1iqca1 |
| not modelled | 10.0 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
96 | c2it8A_ |
| not modelled | 9.9 | 25 | PDB header:plant protein Chain: A: PDB Molecule:trypsin inhibitor 2; PDBTitle: solution structure of a linear analog of the cyclic squash2 trypsin inhibitor mcoti-ii
97 | d2it8a1 |
| not modelled | 9.9 | 25 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Plant inhibitors of proteinases and amylases Family:Plant inhibitors of proteinases and amylases
98 | d2al3a1 |
| not modelled | 9.7 | 17 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain
99 | d1eb7a1 |
| not modelled | 9.2 | 44 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0