Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	G	L	V	G	K	K	V	G	M	T	R	I	F	T	E	D	G	V	S	I	P	V	T	V	I	E	V	E	A	N	R	V	T	Q	V	K	D	L	A	N	D	G	Y	R	A	I	Q	V	T	T	G	A	K	K	A	N	R	V
Secondary structure
SS confidence
Disorder		?	?	?		?																																																		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	K	P	E	A	G	H	F	A	K	A	G	V	E	A	G	R	G	L	W	E	F	R	L	A	E	G	E	E	F	T	V	G	Q	S	I	S	V	E	L	F	A	D	V	K	K	V	D	V	T	G	T	S	K	G	K	G	F	A	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	V	K	R	W	N	F	R	T	Q	D	A	T	H	G	N	S	L	S	H	R	V	P	G	S	I	G	Q	N	Q	T	P	G	K	V	F	K	G	K	K	M	A	G	Q	M	G	N	E	R	V	T	V	Q	S	L	D	V	V	R	V
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?	?	?	?						?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence		D	A	E	R	N	L	L	L	V	K	G	A	V	P	G	A	T	G	S	D	L	I	V	K	P	A	V	K	A
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gyc chain B domain 1 Region: 1 - 209 Aligned: 209 Modelled: 209 Confidence: 100.0% Identity: 100% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Translation proteins Family: Ribosomal protein L3 Phyre2 PDB 2zjr chain B domain 1 Region: 1 - 209 Aligned: 204 Modelled: 209 Confidence: 100.0% Identity: 51% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Translation proteins Family: Ribosomal protein L3 Phyre2 PDB 2j01 chain E domain 1 Region: 1 - 209 Aligned: 204 Modelled: 205 Confidence: 100.0% Identity: 53% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Translation proteins Family: Ribosomal protein L3 Phyre2 PDB 2ftc chain C Region: 2 - 208 Aligned: 206 Modelled: 207 Confidence: 100.0% Identity: 31% PDB header:ribosome Chain: C: PDB Molecule:mitochondrial 39s ribosomal protein l3; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 1vqo chain B domain 1 Region: 1 - 209 Aligned: 208 Modelled: 209 Confidence: 100.0% Identity: 26% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Translation proteins Family: Ribosomal protein L3 Phyre2 PDB 3jyw chain C Region: 1 - 208 Aligned: 205 Modelled: 208 Confidence: 100.0% Identity: 24% PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution Phyre2 PDB 2zkr chain B Region: 1 - 207 Aligned: 204 Modelled: 207 Confidence: 100.0% Identity: 23% PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es4; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1s1i chain C Region: 1 - 208 Aligned: 205 Modelled: 205 Confidence: 100.0% Identity: 24% PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Phyre2 PDB 3iz5 chain C Region: 1 - 208 Aligned: 205 Modelled: 208 Confidence: 100.0% Identity: 23% PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3 (l3p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 4a1a chain B Region: 1 - 208 Aligned: 205 Modelled: 208 Confidence: 100.0% Identity: 29% PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein l3; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Phyre2 PDB 3bbo chain F Region: 56 - 208 Aligned: 152 Modelled: 153 Confidence: 100.0% Identity: 46% PDB header:ribosome Chain: F: PDB Molecule:ribosomal protein l3; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 1a8p chain A Region: 79 - 116 Aligned: 29 Modelled: 38 Confidence: 29.9% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii Phyre2 PDB 1qfj chain A domain 1 Region: 101 - 110 Aligned: 10 Modelled: 10 Confidence: 23.6% Identity: 20% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 3iuw chain A Region: 80 - 106 Aligned: 26 Modelled: 22 Confidence: 19.9% Identity: 23% PDB header:rna binding protein Chain: A: PDB Molecule:activating signal cointegrator; PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution Phyre2 PDB 1vqo chain Q domain 1 Region: 101 - 109 Aligned: 9 Modelled: 9 Confidence: 19.2% Identity: 44% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal proteins L24p and L21e Phyre2 PDB 1fdr chain A domain 1 Region: 101 - 110 Aligned: 10 Modelled: 10 Confidence: 18.8% Identity: 10% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 2bru chain C Region: 160 - 165 Aligned: 6 Modelled: 6 Confidence: 17.2% Identity: 33% PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase Phyre2 PDB 1a8p chain A domain 1 Region: 79 - 110 Aligned: 23 Modelled: 32 Confidence: 17.1% Identity: 17% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 1qcs chain A domain 1 Region: 95 - 110 Aligned: 16 Modelled: 16 Confidence: 16.3% Identity: 19% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Cdc48 N-terminal domain-like Phyre2 PDB 1d4o chain A Region: 160 - 165 Aligned: 6 Modelled: 6 Confidence: 16.2% Identity: 50% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Transhydrogenase domain III (dIII) Phyre2 1 d2gycb1 2 d2zjrb1 3 d2j01e1 4 c2ftcC_ 5 d1vqob1 6 c3jywC_ 7 c2zkrb_ 8 c1s1iC_ 9 c3iz5C_ 10 c4a1aB_ 11 c3bboF_ 12 c1a8pA_ 13 d1qfja1 14 c3iuwA_ 15 d1vqoq1 16 d1fdra1 17 c2bruC_ 18 d1a8pa1 19 d1qcsa1 20 d1d4oa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gycb1 100.0 100 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Ribosomal protein L3 2 d2zjrb1 100.0 51 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Ribosomal protein L3 3 d2j01e1 100.0 53 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Ribosomal protein L3 4 c2ftcC_ 100.0 31 PDB header:ribosome Chain: C: PDB Molecule:mitochondrial 39s ribosomal protein l3; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 5 d1vqob1 100.0 26 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Ribosomal protein L3 6 c3jywC_ 100.0 24 PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 7 c2zkrb_ 100.0 23 PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es4; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 8 c1s1iC_ 100.0 24 PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 9 c3iz5C_ 100.0 23 PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3 (l3p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 10 c4a1aB_ 100.0 29 PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein l3; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 11 c3bboF_ 100.0 46 PDB header:ribosome Chain: F: PDB Molecule:ribosomal protein l3; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 12 c1a8pA_ 29.9 17 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii 13 d1qfja1 23.6 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 14 c3iuwA_ 19.9 23 PDB header:rna binding protein Chain: A: PDB Molecule:activating signal cointegrator; PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution 15 d1vqoq1 19.2 44 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 16 d1fdra1 18.8 10 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 17 c2bruC_ 17.2 33 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 18 d1a8pa1 17.1 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 19 d1qcsa1 16.3 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 20 d1d4oa_ 16.2 50 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 21 c2zkrq_ not modelled 15.6 22 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 22 d1pnoa_ not modelled 15.4 50 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 23 c1pt9B_ not modelled 15.0 50 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 24 c1v1cA_ not modelled 14.6 10 PDB header:sh3-domain Chain: A: PDB Molecule:obscurin; PDBTitle: solution structure of the sh3 domain of obscurin 25 c1tvcA_ not modelled 14.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath) 26 d2do3a1 not modelled 14.2 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 27 c1qfjD_ not modelled 13.8 26 PDB header:oxidoreductase Chain: D: PDB Molecule:protein (flavin reductase); PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli 28 c1a3qA_ not modelled 13.6 21 PDB header:transcription/dna Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52); PDBTitle: human nf-kappa-b p52 bound to dna 29 d1vlra2 not modelled 11.6 19 Fold:mRNA decapping enzyme DcpS N-terminal domain Superfamily:mRNA decapping enzyme DcpS N-terminal domain Family:mRNA decapping enzyme DcpS N-terminal domain 30 c2bgjB_ not modelled 11.1 22 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms 31 d1ep3b1 not modelled 10.9 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 32 c1s1iQ_ not modelled 10.8 22 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l21-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 33 c2hdeA_ not modelled 10.8 20 PDB header:transcription Chain: A: PDB Molecule:histone deacetylase complex subunit sap18; PDBTitle: solution structure of human sap18 34 d1uwfa1 not modelled 10.2 18 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits 35 c1khiA_ not modelled 9.8 17 PDB header:structural protein Chain: A: PDB Molecule:hex1; PDBTitle: crystal structure of hex1 36 c3izcU_ not modelled 9.5 22 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 37 c1le5E_ not modelled 9.5 30 PDB header:transcription/dna Chain: E: PDB Molecule:nuclear factor nf-kappa-b p65 subunit; PDBTitle: crystal structure of a nf-kb heterodimer bound to an ifnb-kb 38 d2i6va1 not modelled 9.4 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like 39 d2zjrr1 not modelled 9.4 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 40 d1vqot1 not modelled 9.4 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 41 c1vpzB_ not modelled 9.4 36 PDB header:rna binding protein Chain: B: PDB Molecule:carbon storage regulator homolog; PDBTitle: crystal structure of a putative carbon storage regulator protein2 (csra, pa0905) from pseudomonas aeruginosa at 2.05 a resolution 42 c1lq8H_ not modelled 9.4 17 PDB header:blood clotting Chain: H: PDB Molecule:plasma serine protease inhibitor; PDBTitle: crystal structure of cleaved protein c inhibitor 43 c4a1aP_ not modelled 9.2 22 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 44 c3iz5U_ not modelled 8.9 33 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 45 c3iz5Y_ not modelled 8.7 31 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 46 c4a1cS_ not modelled 8.3 19 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 47 c1zeqX_ not modelled 8.1 13 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 48 c1nfiC_ not modelled 8.1 30 PDB header:complex (transcription reg/ank repeat) Chain: C: PDB Molecule:nf-kappa-b p65; PDBTitle: i-kappa-b-alpha/nf-kappa-b complex 49 c1zuyB_ not modelled 8.0 6 PDB header:contractile protein Chain: B: PDB Molecule:myosin-5 isoform; PDBTitle: high-resolution structure of yeast myo5 sh3 domain 50 c1qgyA_ not modelled 7.7 0 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp+ reductase; PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e) 51 d1khia1 not modelled 7.6 16 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 52 c2ok8D_ not modelled 7.5 0 PDB header:oxidoreductase Chain: D: PDB Molecule:putative ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp+ reductase from plasmodium falciparum 53 c2vl6C_ not modelled 7.5 33 PDB header:dna binding protein Chain: C: PDB Molecule:minichromosome maintenance protein mcm; PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain 54 c2jppB_ not modelled 7.4 29 PDB header:translation/rna Chain: B: PDB Molecule:translational repressor; PDBTitle: structural basis of rsma/csra rna recognition: structure of2 rsme bound to the shine-dalgarno sequence of hcna mrna 55 c3a98A_ not modelled 7.3 9 PDB header:signaling protein Chain: A: PDB Molecule:dedicator of cytokinesis protein 2; PDBTitle: crystal structure of the complex of the interacting regions of dock22 and elmo1 56 c1cqxB_ not modelled 7.2 18 PDB header:lipid binding protein Chain: B: PDB Molecule:flavohemoprotein; PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution 57 d1ikna2 not modelled 7.1 33 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:Rel/Dorsal transcription factors, DNA-binding domain 58 c3s88I_ not modelled 7.1 63 PDB header:immune system/viral protein Chain: I: PDB Molecule:envelope glycoprotein; PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6 59 d1sm4a1 not modelled 6.9 10 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 60 c3mxnB_ not modelled 6.8 25 PDB header:replication Chain: B: PDB Molecule:recq-mediated genome instability protein 2; PDBTitle: crystal structure of the rmi core complex 61 c1gvhA_ not modelled 6.8 11 PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket 62 c1ep3B_ not modelled 6.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. 63 c3csyK_ not modelled 6.5 63 PDB header:immune system/viral protein Chain: K: PDB Molecule:envelope glycoprotein gp1; PDBTitle: crystal structure of the trimeric prefusion ebola virus glycoprotein2 in complex with a neutralizing antibody from a human survivor 64 d1cqxa2 not modelled 6.4 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 65 c2piaA_ not modelled 6.4 20 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 66 c1krhA_ not modelled 6.2 40 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 67 d1nyka_ not modelled 6.0 23 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 68 c1i4oC_ not modelled 6.0 19 PDB header:apoptosis/hydrolase Chain: C: PDB Molecule:baculoviral iap repeat-containing protein 4; PDBTitle: crystal structure of the xiap/caspase-7 complex 69 d1yb2a1 not modelled 6.0 6 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 70 c1yb2A_ not modelled 6.0 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ta0852; PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum. 71 d1uwva1 not modelled 5.8 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 72 d1vpza_ not modelled 5.8 36 Fold:CsrA-like Superfamily:CsrA-like Family:CsrA-like 73 d1fnda1 not modelled 5.8 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 74 d2bmwa1 not modelled 5.6 0 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 75 d1gvha2 not modelled 5.6 10 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 76 d2cwza1 not modelled 5.6 22 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:TTHA0967-like 77 d2e9xc2 not modelled 5.5 28 Fold:GINS/PriA/YqbF domain Superfamily:PriA/YqbF domain Family:PSF3 N-terminal domain-like 78 c3cxjB_ not modelled 5.5 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 79 d1lcka1 not modelled 5.2 6 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 80 c1t3oA_ not modelled 5.1 32 PDB header:rna binding protein Chain: A: PDB Molecule:carbon storage regulator; PDBTitle: solution structure of csra, a bacterial carbon storage2 regulatory protein 81 d1kuta_ not modelled 5.1 26 Fold:SAICAR synthase-like Superfamily:SAICAR synthase-like Family:SAICAR synthase 82 c2b5oA_ not modelled 5.0 0 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp reductase 83 d1ra0a1 not modelled 5.0 16 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Cytosine deaminase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0