PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1qfjD_

Fold library id	PDB Header	Molecule	Title
c1qfjD_	PDB header: oxidoreductase	Chain: D: PDB Molecule: protein (flavin reductase);	PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from2 escherichia coli

Links to external resources
Added to library: Tue Mar 16 13:30:07 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T T L S C K V T S V E A I T D T V Y R V R I V P D A A F S F R A G Q Y L M V V M D E R D K R P F S M A S T P D E K G F I E L H I G Y A K A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
T T
T T
S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M D R I L K D H Q I V V D I P H G E A W L R D D E E R P M I L I A G G T G F S Y A R S I L L T A L A R N P N R D I T I Y W G G R E E Q H L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S S
S S T
T T
S S G G G S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D L C E L E A L S L K H P G L Q V V P V V E Q P E A G W R G R T G T V L T A V L Q D H G T L A E H D I Y I A G R F E M A K I A R D L F C S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S S
T T
S B
S
S
T T

. . . . . . . . . 220 . . . . . .

Sequence R N A R E D R L F G D A F A F I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	T	L	S	C	K	V	T	S	V	E	A	I	T	D	T	V	Y	R	V	R	I	V	P	D	A	A	F	S	F	R	A	G	Q	Y	L	M	V	V	M	D	E	R	D	K	R	P	F	S	M	A	S	T	P	D	E	K	G	F	I	E	L	H	I	G	Y	A	K	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S	S									S	S						T	T									T	T									S		T	T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	D	R	I	L	K	D	H	Q	I	V	V	D	I	P	H	G	E	A	W	L	R	D	D	E	E	R	P	M	I	L	I	A	G	G	T	G	F	S	Y	A	R	S	I	L	L	T	A	L	A	R	N	P	N	R	D	I	T	I	Y	W	G	G	R	E	E	Q	H	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S										S							S	S	S								S	S	T																T	T										S	S	G	G	G	S	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	L	C	E	L	E	A	L	S	L	K	H	P	G	L	Q	V	V	P	V	V	E	Q	P	E	A	G	W	R	G	R	T	G	T	V	L	T	A	V	L	Q	D	H	G	T	L	A	E	H	D	I	Y	I	A	G	R	F	E	M	A	K	I	A	R	D	L	F	C	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T												T	T								S	S			T	T			S	B		S											S			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	R	N	A	R	E	D	R	L	F	G	D	A	F	A	F	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				G	G	G				G	G	G	S