Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	Q	L	V	A	V	G	T	K	M	P	D	W	V	Q	T	G	F	T	E	Y	L	R	R	F	P	K	D	M	P	F	E	L	I	E	I	P	A	G	K	R	G	K	N	A	D	I	K	R	I	L	D	K	E	G	E	Q	M
Secondary structure
SS confidence
Disorder		?	?																																							?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	A	A	A	G	K	N	R	I	V	T	L	D	I	P	G	K	P	W	D	T	P	Q	L	A	A	E	L	E	R	W	K	L	D	G	R	D	V	S	L	L	I	G	G	P	E	G	L	S	P	A	C	K	A	A	A	E	Q	S	W
Secondary structure
SS confidence
Disorder																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Sequence		S	L	S	A	L	T	L	P	H	P	L	V	R	V	L	V	A	E	S	L	Y	R	A	W	S	I	T	T	N	H	P	Y	H	R	E
Secondary structure
SS confidence
Disorder						?	?	?																						?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ns5 chain A Region: 1 - 153 Aligned: 153 Modelled: 149 Confidence: 100.0% Identity: 97% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YbeA-like Phyre2 PDB 1vh0 chain A Region: 1 - 152 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 31% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YbeA-like Phyre2 PDB 1to0 chain A Region: 1 - 152 Aligned: 146 Modelled: 151 Confidence: 100.0% Identity: 32% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YbeA-like Phyre2 PDB 1o6d chain A Region: 1 - 150 Aligned: 146 Modelled: 146 Confidence: 100.0% Identity: 26% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YbeA-like Phyre2 PDB 1oy5 chain B Region: 58 - 142 Aligned: 80 Modelled: 85 Confidence: 96.5% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus Phyre2 PDB 1oy5 chain A Region: 58 - 142 Aligned: 80 Modelled: 85 Confidence: 96.3% Identity: 20% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 1p9p chain A Region: 1 - 142 Aligned: 135 Modelled: 135 Confidence: 96.0% Identity: 15% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 3o7b chain A Region: 60 - 132 Aligned: 64 Modelled: 73 Confidence: 95.5% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:ribosome biogenesis nep1 rna methyltransferase; PDBTitle: crystal structure of archaeoglobus fulgidus nep1 bound to s-2 adenosylhomocysteine Phyre2 PDB 3knu chain D Region: 58 - 142 Aligned: 80 Modelled: 80 Confidence: 95.5% Identity: 15% PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum Phyre2 PDB 3ief chain A Region: 57 - 142 Aligned: 81 Modelled: 81 Confidence: 94.8% Identity: 12% PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. Phyre2 PDB 3ky7 chain A Region: 65 - 142 Aligned: 73 Modelled: 73 Confidence: 94.6% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 Phyre2 PDB 2v3j chain A Region: 60 - 146 Aligned: 83 Modelled: 82 Confidence: 94.4% Identity: 17% PDB header:ribosomal protein Chain: A: PDB Molecule:essential for mitotic growth 1; PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase Phyre2 PDB 2v3k chain A domain 1 Region: 60 - 146 Aligned: 83 Modelled: 82 Confidence: 94.3% Identity: 17% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: EMG1/NEP1-like Phyre2 PDB 1ual chain A Region: 65 - 142 Aligned: 73 Modelled: 73 Confidence: 94.2% Identity: 16% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 3ai9 chain X Region: 58 - 144 Aligned: 76 Modelled: 71 Confidence: 93.0% Identity: 16% PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase Phyre2 PDB 3quv chain B Region: 57 - 142 Aligned: 81 Modelled: 81 Confidence: 91.3% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus Phyre2 PDB 2qmm chain A domain 1 Region: 58 - 143 Aligned: 76 Modelled: 76 Confidence: 90.4% Identity: 30% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: AF1056-like Phyre2 PDB 2qwv chain A domain 1 Region: 58 - 142 Aligned: 69 Modelled: 83 Confidence: 79.0% Identity: 14% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: AF1056-like Phyre2 PDB 3onp chain A Region: 80 - 142 Aligned: 62 Modelled: 63 Confidence: 78.1% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides Phyre2 PDB 3kty chain A Region: 85 - 144 Aligned: 58 Modelled: 60 Confidence: 76.3% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i Phyre2 1 d1ns5a_ 2 d1vh0a_ 3 d1to0a_ 4 d1o6da_ 5 c1oy5B_ 6 d1oy5a_ 7 d1p9pa_ 8 c3o7bA_ 9 c3knuD_ 10 c3iefA_ 11 c3ky7A_ 12 c2v3jA_ 13 d2v3ka1 14 d1uala_ 15 c3ai9X_ 16 c3quvB_ 17 d2qmma1 18 d2qwva1 19 c3onpA_ 20 c3ktyA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ns5a_ 100.0 97 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 2 d1vh0a_ 100.0 31 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 3 d1to0a_ 100.0 32 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 4 d1o6da_ 100.0 26 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 5 c1oy5B_ 96.5 20 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus 6 d1oy5a_ 96.3 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 7 d1p9pa_ 96.0 15 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 8 c3o7bA_ 95.5 20 PDB header:transferase Chain: A: PDB Molecule:ribosome biogenesis nep1 rna methyltransferase; PDBTitle: crystal structure of archaeoglobus fulgidus nep1 bound to s-2 adenosylhomocysteine 9 c3knuD_ 95.5 15 PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum 10 c3iefA_ 94.8 12 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 11 c3ky7A_ 94.6 15 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 12 c2v3jA_ 94.4 17 PDB header:ribosomal protein Chain: A: PDB Molecule:essential for mitotic growth 1; PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase 13 d2v3ka1 94.3 17 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like 14 d1uala_ 94.2 16 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 15 c3ai9X_ 93.0 16 PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase 16 c3quvB_ 91.3 15 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus 17 d2qmma1 90.4 30 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 18 d2qwva1 79.0 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 19 c3onpA_ 78.1 23 PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides 20 c3ktyA_ 76.3 17 PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i 21 d3bbda1 not modelled 76.3 26 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like 22 d1rtta_ not modelled 64.9 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 23 d1k3ra2 not modelled 54.2 24 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 24 c1k3rA_ not modelled 52.8 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 25 c1vhyB_ not modelled 51.9 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein hi0303; PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558 26 d1vhka2 not modelled 48.3 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 27 d1nyra1 not modelled 45.9 14 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 28 d1v2xa_ not modelled 45.0 22 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 29 c3absD_ not modelled 43.2 24 PDB header:lyase Chain: D: PDB Molecule:ethanolamine ammonia-lyase light chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with adeninylpentylcobalamin and ethanolamine 30 c3anyB_ not modelled 43.2 24 PDB header:lyase Chain: B: PDB Molecule:ethanolamine ammonia-lyase light chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and (r)-2-amino-1-propanol 31 c2l8bA_ not modelled 38.9 9 PDB header:hydrolase Chain: A: PDB Molecule:protein trai; PDBTitle: trai (381-569) 32 c3ic6A_ not modelled 38.5 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae 33 c3i1iA_ not modelled 33.4 23 PDB header:transferase Chain: A: PDB Molecule:homoserine o-acetyltransferase; PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis 34 d1d4ba_ not modelled 32.0 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 35 c2vf7B_ not modelled 31.5 12 PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans 36 c2xhqA_ not modelled 31.2 10 PDB header:hydrolase Chain: A: PDB Molecule:archaemetzincin; PDBTitle: crystal structure of archaemetzincin (amza) from archaeoglobus2 fulgidus at 1.45 a resolution 37 d2nx2a1 not modelled 30.3 22 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:YpsA-like 38 c2egwB_ not modelled 26.6 20 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 39 d1fw8a_ not modelled 25.5 11 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 40 c1zjrA_ not modelled 24.3 22 PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme 41 d1nxza2 not modelled 24.3 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 42 d3e2ba1 not modelled 23.6 10 Fold:DLC Superfamily:DLC Family:DLC 43 d1v6za2 not modelled 23.0 16 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 44 c2r2aB_ not modelled 21.9 20 PDB header:toxin Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal domain of zonular occludens toxin from2 neisseria meningitidis 45 d1hdia_ not modelled 21.9 9 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 46 d1t3la2 not modelled 21.2 25 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 47 c2qipA_ not modelled 20.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function vpa0982; PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633 48 c1ipaA_ not modelled 20.5 19 PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase 49 d1vyua2 not modelled 20.3 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 50 c3b85A_ not modelled 20.2 19 PDB header:hydrolase Chain: A: PDB Molecule:phosphate starvation-inducible protein; PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum 51 c2eelA_ not modelled 19.9 21 PDB header:apoptosis Chain: A: PDB Molecule:cell death activator cide-a; PDBTitle: solution structure of the cide-n domain of human cell death2 activator cide-a 52 d1vyva2 not modelled 19.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 53 d2b61a1 not modelled 19.7 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase 54 c3ab4K_ not modelled 19.5 17 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 55 d1u83a_ not modelled 19.0 19 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 56 c1u83A_ not modelled 19.0 19 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 57 c3kw2A_ not modelled 18.9 18 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 58 d2vata1 not modelled 18.7 25 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase 59 c3i42A_ not modelled 17.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 60 c1wziA_ not modelled 17.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for alteration of cofactor specificity of2 malate dehydrogenase from thermus flavus 61 d16pka_ not modelled 17.2 10 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 62 d1vjda_ not modelled 17.1 9 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 63 c3fwcN_ not modelled 16.3 33 PDB header:cell cycle, transcription Chain: N: PDB Molecule:nuclear mrna export protein sac3; PDBTitle: sac3:sus1:cdc31 complex 64 c1ibxB_ not modelled 16.1 11 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:chimera of igg binding protein g and dna PDBTitle: nmr structure of dff40 and dff45 n-terminal domain complex 65 d1ibxb_ not modelled 16.1 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 66 d1x6oa2 not modelled 16.0 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 67 d1nj8a1 not modelled 15.8 15 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 68 d1vrma1 not modelled 15.3 5 Fold:T-fold Superfamily:ApbE-like Family:ApbE-like 69 c2cx8B_ not modelled 15.3 15 PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) 70 d1hyea2 not modelled 14.9 19 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 71 d1qpga_ not modelled 14.3 11 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 72 d1j3ka_ not modelled 14.1 9 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 73 d1ltka_ not modelled 13.9 11 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 74 c2j48A_ not modelled 13.9 18 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 75 d1cmia_ not modelled 13.8 10 Fold:DLC Superfamily:DLC Family:DLC 76 c2blcA_ not modelled 13.7 23 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase-thymidylate synthase; PDBTitle: sp21 double mutant p. vivax dihydrofolate reductase in2 complex with des-chloropyrimethamine 77 c1zmrA_ not modelled 13.5 13 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase 78 d1juva_ not modelled 13.5 57 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 79 c3q3vA_ not modelled 13.5 6 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 80 c3hdvB_ not modelled 12.9 10 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 81 d1xtda2 not modelled 12.8 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 82 d1c0aa2 not modelled 12.8 13 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 83 d1phpa_ not modelled 12.3 15 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 84 d1vpea_ not modelled 12.3 13 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 85 c3flaB_ not modelled 12.1 18 PDB header:hydrolase Chain: B: PDB Molecule:rifr; PDBTitle: rifr - type ii thioesterase from rifamycin nrps/pks biosynthetic2 pathway - form 1 86 c3bolB_ not modelled 12.0 23 PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ 87 c1vhkA_ not modelled 12.0 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 88 c1x7pB_ not modelled 11.8 24 PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet 89 d2r5fa1 not modelled 11.7 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 90 d1fx7a3 not modelled 11.6 44 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 91 c3rv2B_ not modelled 11.5 50 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum 92 d1v6sa_ not modelled 11.5 17 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 93 d3bula2 not modelled 11.2 23 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 94 c3dg8B_ not modelled 11.2 10 PDB header:oxidoreductase, transferase Chain: B: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate PDBTitle: quadruple mutant (n51i+c59r+s108n+i164l) plasmodium2 falciparum dihydrofolate reductase-thymidylate synthase3 (pfdhfr-ts) complexed with rjf670, nadph, and dump 95 c3luaA_ not modelled 11.2 9 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum 96 d1ik7a_ not modelled 11.1 16 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 97 d2d8za1 not modelled 10.8 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 98 c3imlB_ not modelled 10.7 63 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei 99 c1zdrB_ not modelled 10.6 17 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrofolate reductase; PDBTitle: dhfr from bacillus stearothermophilus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0