Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	N	N	P	L	I	S	I	Y	M	P	T	W	N	R	Q	Q	L	A	I	R	A	I	K	S	V	L	R	Q	D	Y	S	N	W	E	M	I	I	V	D	D	C	S	T	S	W	E	Q	L	Q	Q	Y	V	T	A	L	N	D	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	I	T	Y	I	H	N	D	I	N	S	G	A	C	A	V	R	N	Q	A	I	M	L	A	Q	G	E	Y	I	T	G	I	D	D	D	D	E	W	T	P	N	R	L	S	V	F	L	A	H	K	Q	Q	L	V	T	H	A	F	L	Y
Secondary structure
SS confidence
Disorder												?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	N	D	Y	V	C	Q	G	E	V	Y	S	Q	P	A	S	L	P	L	Y	P	K	S	P	Y	S	R	R	L	F	Y	K	R	N	I	I	G	N	Q	V	F	T	W	A	W	R	F	K	E	C	L	F	D	T	E	L	K	A	A	Q
Secondary structure
SS confidence
Disorder											?	?	?		?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	Y	D	I	F	L	R	M	V	V	E	Y	G	E	P	W	K	V	E	E	A	T	Q	I	L	H	I	N	H	G	E	M	Q	I	T	S	S	P	K	K	F	S	G	Y	F	H	F	Y	R	K	H	K	D	K	F	D	R	A	S	K
Secondary structure
SS confidence
Disorder																															?	?	?	?	?	?	?	?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Sequence		K	Y	Q	L	F	T	L	Y	Q	I	R	N	K	R	M	T	W	R	T	L	L	T	L	L	S	V	R	N	G	K	R	L	A	D	G	I	R	G	R
Secondary structure
SS confidence
Disorder													?	?		?		?	?	?	?															?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2z86 chain D Region: 1 - 213 Aligned: 209 Modelled: 213 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp Phyre2 PDB 1xhb chain A domain 2 Region: 2 - 208 Aligned: 207 Modelled: 207 Confidence: 100.0% Identity: 17% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain Phyre2 PDB 2ffu chain A Region: 5 - 245 Aligned: 238 Modelled: 241 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Phyre2 PDB 2d7i chain A Region: 5 - 211 Aligned: 207 Modelled: 207 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ Phyre2 PDB 1xhb chain A Region: 2 - 208 Aligned: 207 Modelled: 207 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 Phyre2 PDB 1qg8 chain A Region: 5 - 229 Aligned: 224 Modelled: 224 Confidence: 100.0% Identity: 19% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Spore coat polysaccharide biosynthesis protein SpsA Phyre2 PDB 3bcv chain A Region: 5 - 199 Aligned: 192 Modelled: 195 Confidence: 99.9% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:putative glycosyltransferase protein; PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis Phyre2 PDB 3f1y chain C Region: 4 - 234 Aligned: 228 Modelled: 231 Confidence: 99.9% Identity: 11% PDB header:transferase Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus Phyre2 PDB 1omx chain B Region: 5 - 231 Aligned: 225 Modelled: 227 Confidence: 99.9% Identity: 10% PDB header:transferase Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2) Phyre2 PDB 1omz chain A Region: 5 - 223 Aligned: 217 Modelled: 219 Confidence: 99.9% Identity: 10% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Exostosin Phyre2 PDB 3ckv chain A Region: 2 - 230 Aligned: 222 Modelled: 229 Confidence: 99.9% Identity: 11% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a mycobacterial protein Phyre2 PDB 2qgi chain A Region: 11 - 226 Aligned: 208 Modelled: 207 Confidence: 99.8% Identity: 9% PDB header:transferase Chain: A: PDB Molecule:atp synthase subunits region orf 6; PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus Phyre2 PDB 1pzt chain A Region: 2 - 207 Aligned: 163 Modelled: 163 Confidence: 98.8% Identity: 12% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: beta 1,4 galactosyltransferase (b4GalT1) Phyre2 PDB 2bo4 chain A domain 1 Region: 9 - 198 Aligned: 189 Modelled: 190 Confidence: 98.6% Identity: 10% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: MGS-like Phyre2 PDB 1fo8 chain A Region: 5 - 208 Aligned: 191 Modelled: 194 Confidence: 98.5% Identity: 15% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: N-acetylglucosaminyltransferase I Phyre2 PDB 3lw6 chain A Region: 6 - 195 Aligned: 145 Modelled: 145 Confidence: 98.2% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:beta-4-galactosyltransferase 7; PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7 Phyre2 PDB 2d0j chain D Region: 5 - 106 Aligned: 100 Modelled: 102 Confidence: 96.4% Identity: 20% PDB header:transferase Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta- PDBTitle: crystal structure of human glcat-s apo form Phyre2 PDB 1v82 chain A Region: 5 - 106 Aligned: 100 Modelled: 102 Confidence: 95.9% Identity: 22% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: 1,3-glucuronyltransferase Phyre2 PDB 3cu0 chain A domain 1 Region: 6 - 106 Aligned: 99 Modelled: 101 Confidence: 95.6% Identity: 16% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: 1,3-glucuronyltransferase Phyre2 PDB 2wvm chain A Region: 6 - 112 Aligned: 102 Modelled: 107 Confidence: 94.6% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii) Phyre2 1 c2z86D_ 2 d1xhba2 3 c2ffuA_ 4 c2d7iA_ 5 c1xhbA_ 6 d1qg8a_ 7 c3bcvA_ 8 c3f1yC_ 9 c1omxB_ 10 d1omza_ 11 c3ckvA_ 12 c2qgiA_ 13 d1pzta_ 14 d2bo4a1 15 d1fo8a_ 16 c3lw6A_ 17 c2d0jD_ 18 d1v82a_ 19 d3cu0a1 20 c2wvmA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2z86D_ 100.0 23 PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp 2 d1xhba2 100.0 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain 3 c2ffuA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 4 c2d7iA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ 5 c1xhbA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 6 d1qg8a_ 100.0 19 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Spore coat polysaccharide biosynthesis protein SpsA 7 c3bcvA_ 99.9 19 PDB header:transferase Chain: A: PDB Molecule:putative glycosyltransferase protein; PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis 8 c3f1yC_ 99.9 11 PDB header:transferase Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus 9 c1omxB_ 99.9 10 PDB header:transferase Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2) 10 d1omza_ 99.9 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin 11 c3ckvA_ 99.9 11 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a mycobacterial protein 12 c2qgiA_ 99.8 9 PDB header:transferase Chain: A: PDB Molecule:atp synthase subunits region orf 6; PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus 13 d1pzta_ 98.8 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:beta 1,4 galactosyltransferase (b4GalT1) 14 d2bo4a1 98.6 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:MGS-like 15 d1fo8a_ 98.5 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:N-acetylglucosaminyltransferase I 16 c3lw6A_ 98.2 11 PDB header:transferase Chain: A: PDB Molecule:beta-4-galactosyltransferase 7; PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7 17 c2d0jD_ 96.4 20 PDB header:transferase Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta- PDBTitle: crystal structure of human glcat-s apo form 18 d1v82a_ 95.9 22 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 19 d3cu0a1 95.6 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 20 c2wvmA_ 94.6 16 PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii) 21 c2zu8A_ not modelled 92.5 14 PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii 22 d1fxoa_ not modelled 92.3 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 23 c2wawA_ not modelled 91.5 13 PDB header:unknown function Chain: A: PDB Molecule:moba relate protein; PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1 24 d1iina_ not modelled 90.6 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 25 d1h5ra_ not modelled 90.5 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 26 d1lvwa_ not modelled 90.5 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 27 d1w77a1 not modelled 87.8 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 28 d1mc3a_ not modelled 86.6 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 29 c2px7A_ not modelled 83.0 9 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8 30 d1h7ea_ not modelled 81.9 13 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 31 c3oamD_ not modelled 81.8 11 PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae 32 c3hl3A_ not modelled 78.4 8 PDB header:transferase Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase; PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose. 33 c2we9A_ not modelled 76.7 9 PDB header:unknown function Chain: A: PDB Molecule:moba-related protein; PDBTitle: crystal structure of rv0371c from mycobacterium2 tuberculosis h37rv 34 c3ngwA_ not modelled 71.7 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis protein a PDBTitle: crystal structure of molybdopterin-guanine dinucleotide biosynthesis2 protein a from archaeoglobus fulgidus, northeast structural genomics3 consortium target gr189 35 c3f1cB_ not modelled 71.2 6 PDB header:transferase Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes 36 d1vh3a_ not modelled 70.4 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 37 d1qwja_ not modelled 68.0 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 38 c3tztB_ not modelled 67.3 9 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 8; PDBTitle: the structure of a protein in glycosyl transferase family 8 from2 anaerococcus prevotii. 39 d1vpaa_ not modelled 67.3 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 40 c3okrA_ not modelled 65.2 12 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 41 c3polA_ not modelled 64.3 9 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii. 42 d1vkpa_ not modelled 63.6 17 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 43 c2xmhB_ not modelled 58.8 11 PDB header:transferase Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase; PDBTitle: the x-ray structure of ctp:inositol-1-phosphate2 cytidylyltransferase from archaeoglobus fulgidus 44 c2y6pC_ not modelled 57.3 14 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb 45 d1i52a_ not modelled 56.9 13 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 46 c1zcyA_ not modelled 53.6 9 PDB header:transferase Chain: A: PDB Molecule:glycogenin-1; PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser 47 c3okrC_ not modelled 52.6 13 PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 48 c2vshB_ not modelled 52.2 9 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae 49 d1ll2a_ not modelled 49.8 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycogenin 50 c2xwlB_ not modelled 49.0 10 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg 51 d1vgwa_ not modelled 48.4 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 52 d1vica_ not modelled 47.2 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 53 c2jerG_ not modelled 46.9 9 PDB header:hydrolase Chain: G: PDB Molecule:agmatine deiminase; PDBTitle: agmatine deiminase of enterococcus faecalis catalyzing its2 reaction. 54 c3tqdA_ not modelled 45.0 17 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii 55 c3ssoE_ not modelled 41.4 22 PDB header:transferase Chain: E: PDB Molecule:methyltransferase; PDBTitle: myce methyltransferase from the mycinamycin biosynthetic pathway in2 complex with mg and sah, crystal form 2 56 c2pa4B_ not modelled 41.3 9 PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose 57 c2gamA_ not modelled 40.9 11 PDB header:transferase Chain: A: PDB Molecule:beta-1,6-n-acetylglucosaminyltransferase; PDBTitle: x-ray crystal structure of murine leukocyte-type core 2 b1,2 6-n-acetylglucosaminyltransferase (c2gnt-l) in complex3 with galb1,3galnac 58 d1xkna_ not modelled 39.4 19 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 59 c2f59B_ not modelled 39.1 14 PDB header:transferase Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 60 d2ewoa1 not modelled 38.9 13 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 61 d2oi6a2 not modelled 35.7 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 62 d1zbra1 not modelled 35.5 25 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 63 c2o7qA_ not modelled 32.7 20 PDB header:oxidoreductase,transferase Chain: A: PDB Molecule:bifunctional 3-dehydroquinate dehydratase/shikimate PDBTitle: crystal structure of the a. thaliana dhq-dehydroshikimate-sdh-2 shikimate-nadp(h) 64 c3sirD_ not modelled 30.5 9 PDB header:hydrolase Chain: D: PDB Molecule:caspase; PDBTitle: crystal structure of drice 65 d1w55a1 not modelled 30.1 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 66 c3d5nB_ not modelled 29.2 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:q97w15_sulso; PDBTitle: crystal structure of the q97w15_sulso protein from2 sulfolobus solfataricus. nesg target ssr125. 67 c1zctB_ not modelled 27.9 8 PDB header:transferase Chain: B: PDB Molecule:glycogenin-1; PDBTitle: structure of glycogenin truncated at residue 270 in a2 complex with udp 68 c1i51A_ not modelled 26.7 23 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-7 subunit p20; PDBTitle: crystal structure of caspase-7 complexed with xiap 69 d1ga8a_ not modelled 25.6 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Galactosyltransferase LgtC 70 c1ga8A_ not modelled 25.6 10 PDB header:transferase Chain: A: PDB Molecule:galactosyl transferase lgtc; PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs. 71 c1ez4B_ not modelled 25.5 19 PDB header:oxidoreductase Chain: B: PDB Molecule:lactate dehydrogenase; PDBTitle: crystal structure of non-allosteric l-lactate dehydrogenase2 from lactobacillus pentosus at 2.3 angstrom resolution 72 d1g97a2 not modelled 24.2 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 73 d1ez4a1 not modelled 23.2 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 74 c3h11A_ not modelled 22.0 23 PDB header:apoptosis Chain: A: PDB Molecule:casp8 and fadd-like apoptosis regulator; PDBTitle: zymogen caspase-8:c-flipl protease domain complex 75 d1llca1 not modelled 20.5 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 76 c2e3dB_ not modelled 19.9 14 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase 77 d1vh1a_ not modelled 19.1 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 78 d1zbsa2 not modelled 18.6 44 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 79 d3b48a1 not modelled 18.1 14 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 80 c1nmqB_ not modelled 18.1 11 PDB header:apoptosis, hydrolase Chain: B: PDB Molecule:caspase-3; PDBTitle: extendend tethering: in situ assembly of inhibitors 81 d1ejba_ not modelled 16.5 24 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 82 c3pnnA_ not modelled 16.1 10 PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83 83 d1uasa2 not modelled 15.1 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 84 d1nqua_ not modelled 14.9 18 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 85 d1szna2 not modelled 14.8 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 86 d1ldna1 not modelled 14.6 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 87 c1t0oA_ not modelled 14.4 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: the structure of alpha-galactosidase from trichoderma reesei complexed2 with beta-d-galactose 88 c3sipC_ not modelled 14.1 14 PDB header:hydrolase/ligase/hydrolase Chain: C: PDB Molecule:caspase; PDBTitle: crystal structure of drice and diap1-bir1 complex 89 d1c41a_ not modelled 14.1 16 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 90 c1uasA_ not modelled 13.7 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of rice alpha-galactosidase 91 c3a5vA_ not modelled 13.4 30 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of alpha-galactosidase i from mortierella vinacea 92 c2v65A_ not modelled 12.8 11 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase a chain; PDBTitle: apo ldh from the psychrophile c. gunnari 93 c2ql5A_ not modelled 12.3 23 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-7; PDBTitle: crystal structure of caspase-7 with inhibitor ac-dmqd-cho 94 c3zq4C_ not modelled 11.9 15 PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 95 c3brkX_ not modelled 11.7 8 PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens 96 d1ffki_ not modelled 11.6 45 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L15e 97 c2funB_ not modelled 11.4 19 PDB header:apoptosis/hydrolase Chain: B: PDB Molecule:caspase-8; PDBTitle: alternative p35-caspase-8 complex 98 c3edqC_ not modelled 11.1 13 PDB header:hydrolase/hydrolase inhibitor Chain: C: PDB Molecule:caspase-3; PDBTitle: crystal structure of caspase-3 with inhibitor ac-ldesd-cho 99 c1pyoA_ not modelled 11.0 12 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-2; PDBTitle: crystal structure of human caspase-2 in complex with acetyl-leu-asp-2 glu-ser-asp-cho

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0