PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3tqdA_

Fold library id	PDB Header	Molecule	Title
c3tqdA_	PDB header: transferase	Chain: A: PDB Molecule: 3-deoxy-manno-octulosonate cytidylyltransferase;	PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii

Links to external resources
Added to library: Sat Oct 29 16:26:01 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E F R V I I P A R F D L P G K A L V D I A G K P X I Q H V Y E S A I K S G A E E V V I A T D D K R I R Q V A E D F G A V V C X T S S D H Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G
T T T T
S S
T T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G T E R I A E A A V A L G F E D D E I I V C L Q G D E P L I P P D A I R K L A E D L D E H D K V A S L C T P I T E V D E L F N P H S T K V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T
T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L N R R N Y A L Y F S H A P I P W G R D T F S D K E N L Q L N G S H Y R H V G I Y A Y R V G F L E E Y L S W D A C P A E K X E A L E Q L R I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S B S S
S S
T T T T T
G G G
S S
S
T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . .

Sequence L W H G G R I H X V V A K S K C P P G V D T E E D L E R V R A Y F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	F	R	V	I	I	P	A	R	F	D	L	P	G	K	A	L	V	D	I	A	G	K	P	X	I	Q	H	V	Y	E	S	A	I	K	S	G	A	E	E	V	V	I	A	T	D	D	K	R	I	R	Q	V	A	E	D	F	G	A	V	V	C	X	T	S	S	D	H	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	G	G	G				T	T														T	T		S							S											T	T								T	T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	T	E	R	I	A	E	A	A	V	A	L	G	F	E	D	D	E	I	I	V	C	L	Q	G	D	E	P	L	I	P	P	D	A	I	R	K	L	A	E	D	L	D	E	H	D	K	V	A	S	L	C	T	P	I	T	E	V	D	E	L	F	N	P	H	S	T	K	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T			T	T								T	T																																				T		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	N	R	R	N	Y	A	L	Y	F	S	H	A	P	I	P	W	G	R	D	T	F	S	D	K	E	N	L	Q	L	N	G	S	H	Y	R	H	V	G	I	Y	A	Y	R	V	G	F	L	E	E	Y	L	S	W	D	A	C	P	A	E	K	X	E	A	L	E	Q	L	R	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S	B						S	S		S	S			T	T	T	T	T		G	G	G				S	S																						S										T		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Sequence	L	W	H	G	G	R	I	H	X	V	V	A	K	S	K	C	P	P	G	V	D	T	E	E	D	L	E	R	V	R	A	Y	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T									S	S							S	S									T	T