PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2y6pC_

Fold library id	PDB Header	Molecule	Title
c2y6pC_	PDB header: transferase	Chain: C: PDB Molecule: 3-deoxy-manno-octulosonate cytidylyltransferase;	PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb

Links to external resources
Added to library: Sat Aug 27 10:00:06 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R A V I I P A R L G S T R L K E K P L K N L L G K P L I R W V V E G L V K T G E R V I L A T D S E R V K E V V E D L C E V F L T P S D L P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T T G G G S T T T T T S
S
T T T S
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G S D R V L Y V V R D L D V D L I I N Y Q G D E P F V Y E E D I K L I F R E L E K G E R V V T L A R K D K E A Y E R P E D V K V V L D R E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
T
S
S T T T T
T T S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y A L Y F S R S P I P Y F R K N D T F Y P L K H V G I Y G F R K E T L M E F G A M P P S K L E Q I E G L E Q L R L L E N G I K I K V L I T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S S
S
S S
S S
T S
T
T T T

. . . . . . . . . 220 . . . . . . . . .

Sequence N Y Y H G V D T E E D L K I V E E K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	A	V	I	I	P	A	R	L	G	S	T	R	L	K	E	K	P	L	K	N	L	L	G	K	P	L	I	R	W	V	V	E	G	L	V	K	T	G	E	R	V	I	L	A	T	D	S	E	R	V	K	E	V	V	E	D	L	C	E	V	F	L	T	P	S	D	L	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S			S	S	S	T	T	G	G	G	S			T	T													T	T	T	S							S									T	T	T	S							T	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	S	D	R	V	L	Y	V	V	R	D	L	D	V	D	L	I	I	N	Y	Q	G	D	E	P	F	V	Y	E	E	D	I	K	L	I	F	R	E	L	E	K	G	E	R	V	V	T	L	A	R	K	D	K	E	A	Y	E	R	P	E	D	V	K	V	V	L	D	R	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T				S							T	T																			T		S									S	T	T	T	T		T	T	S							T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	A	L	Y	F	S	R	S	P	I	P	Y	F	R	K	N	D	T	F	Y	P	L	K	H	V	G	I	Y	G	F	R	K	E	T	L	M	E	F	G	A	M	P	P	S	K	L	E	Q	I	E	G	L	E	Q	L	R	L	L	E	N	G	I	K	I	K	V	L	I	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B						S	S			S			S	S			S	S																					T	S										T		T							T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	N	Y	Y	H	G	V	D	T	E	E	D	L	K	I	V	E	E	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S							S									T	T