PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3oamD_

Fold library id	PDB Header	Molecule	Title
c3oamD_	PDB header: transferase	Chain: D: PDB Molecule: 3-deoxy-manno-octulosonate cytidylyltransferase;	PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae

Links to external resources
Added to library: Sat Sep 25 08:45:05 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M S F T V V I P A R Y Q S T R L P G K P L A D I G G K P M I Q W V Y E Q A M Q A G A D R V I I A T D D E R V E Q A V Q A F G G V V C M T S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T T G G G
T T T T
S S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N H Q S G T E R L A E V V A K M A I P A D H I V V N V Q G D E P L I P P A I I R Q V A D N L A A C S A P M A T L A V E I E D E A E V F N P N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S T T
T T
T T
T T
T S S
S
T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A V K V I T D K S G Y A L Y F S R A T I P W D R D N F A K A D K A I V Q P L L R H I G I Y A Y R A G F I N T Y L D W Q P S Q L E K I E C L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S B S S
S S
T S S S
S
S
T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence Q L R V L W H G E K I H V A V A L E A P P A G V D T P E D L E V V R R I V A E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	F	T	V	V	I	P	A	R	Y	Q	S	T	R	L	P	G	K	P	L	A	D	I	G	G	K	P	M	I	Q	W	V	Y	E	Q	A	M	Q	A	G	A	D	R	V	I	I	A	T	D	D	E	R	V	E	Q	A	V	Q	A	F	G	G	V	V	C	M	T	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S			S	S	S	T	T	G	G	G				T	T														T	T		S							S											T	T								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	H	Q	S	G	T	E	R	L	A	E	V	V	A	K	M	A	I	P	A	D	H	I	V	V	N	V	Q	G	D	E	P	L	I	P	P	A	I	I	R	Q	V	A	D	N	L	A	A	C	S	A	P	M	A	T	L	A	V	E	I	E	D	E	A	E	V	F	N	P	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S			S											T	T			T	T								T	T		T	T															T	S	S		S															T		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	V	K	V	I	T	D	K	S	G	Y	A	L	Y	F	S	R	A	T	I	P	W	D	R	D	N	F	A	K	A	D	K	A	I	V	Q	P	L	L	R	H	I	G	I	Y	A	Y	R	A	G	F	I	N	T	Y	L	D	W	Q	P	S	Q	L	E	K	I	E	C	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S							T	T	S	B						S	S		S	S							T	S	S	S					S																						S										T		T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	Q	L	R	V	L	W	H	G	E	K	I	H	V	A	V	A	L	E	A	P	P	A	G	V	D	T	P	E	D	L	E	V	V	R	R	I	V	A	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T						T	T									S	S							S	S