PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2qgiA_

Fold library id	PDB Header	Molecule	Title
c2qgiA_	PDB header: transferase	Chain: A: PDB Molecule: atp synthase subunits region orf 6;	PDBTitle: the udp complex structure of the sixth gene product of the2 f1-atpase operon of rhodobacter blasticus

Links to external resources
Added to library: Tue Mar 16 13:24:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K P V P T Y V Q D K D E S T L M F S V C S L V R D Q A K Y D R L L E S F E R F G F T P D K A E F L A A D N R E G N Q F H G F S W H K Q M L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T T
T T T
S S S
S S
T T T G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R C K G R Y V I F C H E D V E L V D R G Y D D L V A A I E A L E E A D P K W L V A G V A G S P W R P L N H S V T A Q A L H I S D V F G N D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
S S T T
S S
T T S S S
S
T T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R R G N V P C R V E S L D E C F L L M R R L K P V L N S Y D M Q G F H Y Y G A D L C L Q A E F L G G R A Y A I D F H L H H Y G R A I A D E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
T T T T B
S S
S S S S T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . .

Sequence F H R L R Q E M A Q K Y R R W F P G R I L H C V T G R V A L G G G W Y E A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S T T
T T
G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	P	V	P	T	Y	V	Q	D	K	D	E	S	T	L	M	F	S	V	C	S	L	V	R	D	Q	A	K	Y	D	R	L	L	E	S	F	E	R	F	G	F	T	P	D	K	A	E	F	L	A	A	D	N	R	E	G	N	Q	F	H	G	F	S	W	H	K	Q	M	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S							S								S															T	T			T	T	T									S	S	S		S	S		T	T	T						G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	C	K	G	R	Y	V	I	F	C	H	E	D	V	E	L	V	D	R	G	Y	D	D	L	V	A	A	I	E	A	L	E	E	A	D	P	K	W	L	V	A	G	V	A	G	S	P	W	R	P	L	N	H	S	V	T	A	Q	A	L	H	I	S	D	V	F	G	N	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G			S	S							T	T				S	S																		T	T						S					S	S		S		T	T	S										T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	R	G	N	V	P	C	R	V	E	S	L	D	E	C	F	L	L	M	R	R	L	K	P	V	L	N	S	Y	D	M	Q	G	F	H	Y	Y	G	A	D	L	C	L	Q	A	E	F	L	G	G	R	A	Y	A	I	D	F	H	L	H	H	Y	G	R	A	I	A	D	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S	S								T	T						T	T	B						S	S			S	S	S	S												T	T																			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Sequence	F	H	R	L	R	Q	E	M	A	Q	K	Y	R	R	W	F	P	G	R	I	L	H	C	V	T	G	R	V	A	L	G	G	G	W	Y	E	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T	S	T	T						T	T								G	G	G	G