Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	I	I	T	E	D	Y	Q	E	M	S	R	V	A	A	H	H	L	L	G	Y	M	S	K	T	R	R	V	N	L	A	I	T	A	G	S	T	P	K	G	M	Y	E	Y	L	T	T	L	V	K	G	K	P	W	Y	D	N	C
Secondary structure
SS confidence
Disorder		?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	F	Y	N	F	D	E	I	P	F	R	G	K	E	G	E	G	V	T	I	T	N	L	R	N	L	F	F	T	P	A	G	I	K	E	E	N	I	Q	K	L	T	I	D	N	Y	R	E	H	D	Q	K	L	A	R	E	G	G	L	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	V	V	L	G	L	G	A	D	G	H	F	C	G	N	L	P	N	T	T	H	F	H	E	Q	T	V	E	F	P	I	Q	G	E	M	V	D	I	V	A	H	G	E	L	G	G	D	F	S	L	V	P	D	S	Y	V	T	M	G	P
Secondary structure
SS confidence
Disorder																						?														?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	S	I	M	A	A	K	N	L	L	I	I	V	S	G	A	G	K	A	Q	A	L	K	N	V	L	Q	G	P	V	T	E	D	V	P	A	S	V	L	Q	L	H	P	S	L	M	V	I	A	D	K	A	A	A	A	E	L	A	L	G
Secondary structure
SS confidence
Disorder																																																								?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ne7 chain A Region: 1 - 238 Aligned: 236 Modelled: 238 Confidence: 100.0% Identity: 29% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: NagB-like Phyre2 PDB 2bkx chain B Region: 1 - 238 Aligned: 235 Modelled: 238 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily Phyre2 PDB 3hn6 chain D Region: 1 - 238 Aligned: 236 Modelled: 238 Confidence: 100.0% Identity: 32% PDB header:isomerase Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi Phyre2 PDB 1fsf chain A Region: 1 - 238 Aligned: 236 Modelled: 238 Confidence: 100.0% Identity: 28% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: NagB-like Phyre2 PDB 2ri0 chain B Region: 1 - 237 Aligned: 230 Modelled: 237 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans Phyre2 PDB 3ico chain A Region: 2 - 238 Aligned: 222 Modelled: 224 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from2 mycobacterium tuberculosis Phyre2 PDB 2j0e chain A Region: 1 - 238 Aligned: 228 Modelled: 238 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei Phyre2 PDB 3oc6 chain A Region: 3 - 237 Aligned: 220 Modelled: 222 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 smegmatis, apo form Phyre2 PDB 1y89 chain B Region: 1 - 238 Aligned: 222 Modelled: 223 Confidence: 100.0% Identity: 23% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:devb protein; PDBTitle: crystal structure of devb protein Phyre2 PDB 3e15 chain D Region: 1 - 229 Aligned: 228 Modelled: 229 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: D: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: 6-phosphogluconolactonase from plasmodium vivax Phyre2 PDB 3css chain A Region: 2 - 238 Aligned: 223 Modelled: 226 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from leishmania2 guyanensis Phyre2 PDB 1vl1 chain A Region: 2 - 231 Aligned: 208 Modelled: 215 Confidence: 100.0% Identity: 19% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: NagB-like Phyre2 PDB 1pbt chain A Region: 2 - 231 Aligned: 208 Modelled: 215 Confidence: 100.0% Identity: 19% PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima Phyre2 PDB 3lhi chain A Region: 2 - 229 Aligned: 214 Modelled: 227 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution Phyre2 PDB 3lwd chain A Region: 6 - 229 Aligned: 208 Modelled: 222 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution Phyre2 PDB 3nwp chain A Region: 1 - 229 Aligned: 214 Modelled: 229 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of a 6-phosphogluconolactonase (sbal_2240) from2 shewanella baltica os155 at 1.40 a resolution Phyre2 PDB 2gnp chain A domain 1 Region: 2 - 237 Aligned: 218 Modelled: 231 Confidence: 100.0% Identity: 12% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: SorC sugar-binding domain-like Phyre2 PDB 2w48 chain D Region: 2 - 237 Aligned: 215 Modelled: 223 Confidence: 100.0% Identity: 11% PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae Phyre2 PDB 3nze chain B Region: 10 - 237 Aligned: 207 Modelled: 218 Confidence: 100.0% Identity: 15% PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family; PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1. Phyre2 PDB 3kv1 chain A Region: 2 - 237 Aligned: 215 Modelled: 223 Confidence: 100.0% Identity: 11% PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Phyre2 1 d1ne7a_ 2 c2bkxB_ 3 c3hn6D_ 4 d1fsfa_ 5 c2ri0B_ 6 c3icoA_ 7 c2j0eA_ 8 c3oc6A_ 9 c1y89B_ 10 c3e15D_ 11 c3cssA_ 12 d1vl1a_ 13 c1pbtA_ 14 c3lhiA_ 15 c3lwdA_ 16 c3nwpA_ 17 d2gnpa1 18 c2w48D_ 19 c3nzeB_ 20 c3kv1A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ne7a_ 100.0 29 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like 2 c2bkxB_ 100.0 27 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily 3 c3hn6D_ 100.0 32 PDB header:isomerase Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi 4 d1fsfa_ 100.0 28 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like 5 c2ri0B_ 100.0 27 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans 6 c3icoA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from2 mycobacterium tuberculosis 7 c2j0eA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei 8 c3oc6A_ 100.0 22 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 smegmatis, apo form 9 c1y89B_ 100.0 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:devb protein; PDBTitle: crystal structure of devb protein 10 c3e15D_ 100.0 17 PDB header:hydrolase Chain: D: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: 6-phosphogluconolactonase from plasmodium vivax 11 c3cssA_ 100.0 22 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from leishmania2 guyanensis 12 d1vl1a_ 100.0 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like 13 c1pbtA_ 100.0 19 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima 14 c3lhiA_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution 15 c3lwdA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution 16 c3nwpA_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of a 6-phosphogluconolactonase (sbal_2240) from2 shewanella baltica os155 at 1.40 a resolution 17 d2gnpa1 100.0 12 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 18 c2w48D_ 100.0 11 PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae 19 c3nzeB_ 100.0 15 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family; PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1. 20 c3kv1A_ 100.0 11 PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri 21 c2o0mA_ not modelled 100.0 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, sorc family; PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis 22 d2o0ma1 not modelled 100.0 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 23 d2okga1 not modelled 100.0 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 24 d3efba1 not modelled 100.0 12 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 25 d2r5fa1 not modelled 100.0 22 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 26 c3u7jA_ not modelled 95.5 13 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 27 c3hheA_ not modelled 93.3 21 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 28 c1uj6A_ not modelled 91.0 15 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 29 c1lk5C_ not modelled 90.8 18 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 30 d1uj4a1 not modelled 89.4 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 31 c2f8mB_ not modelled 89.0 15 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 32 c1xtzA_ not modelled 89.0 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 33 c1m0sA_ not modelled 87.8 30 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 34 c2pjmA_ not modelled 87.6 10 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 35 c3kwmC_ not modelled 86.3 19 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 36 c3l7oB_ not modelled 85.9 14 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 37 c1lkzB_ not modelled 85.7 17 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 38 d1lk5a1 not modelled 83.5 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 39 d1m0sa1 not modelled 80.7 30 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 40 d1o8bb1 not modelled 78.1 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 41 c2i2aA_ not modelled 59.7 12 PDB header:transferase Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1; PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes 42 d1ni5a1 not modelled 59.2 8 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 43 d1wxia1 not modelled 54.7 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 44 c1ni5A_ not modelled 37.8 8 PDB header:cell cycle Chain: A: PDB Molecule:putative cell cycle protein mesj; PDBTitle: structure of the mesj pp-atpase from escherichia coli 45 d1xnga1 not modelled 36.8 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 46 c3p52B_ not modelled 35.8 12 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion 47 c3tqcB_ not modelled 32.2 21 PDB header:transferase Chain: B: PDB Molecule:pantothenate kinase; PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii 48 d1zuna1 not modelled 31.2 7 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like 49 c1zunA_ not modelled 31.1 7 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2; PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae 50 c2hfqA_ not modelled 28.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: nmr structure of protein ne1680 from nitrosomonas europaea:2 northeast structural genomics consortium target net5 51 d2hfqa1 not modelled 28.0 14 Fold:NE1680-like Superfamily:NE1680-like Family:NE1680-like 52 d1kqpa_ not modelled 25.0 23 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 53 c3dpiA_ not modelled 24.6 20 PDB header:ligase Chain: A: PDB Molecule:nad+ synthetase; PDBTitle: crystal structure of nad+ synthetase from burkholderia pseudomallei 54 c2gaaA_ not modelled 24.1 23 PDB header:unknown function Chain: A: PDB Molecule:hypothetical 39.9 kda protein; PDBTitle: crystal structure of yfh7 from saccharomyces cerevisiae: a2 putative p-loop containing kinase with a circular3 permutation. 55 c2c40B_ not modelled 20.2 5 PDB header:hydrolase Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution 56 c3clhA_ not modelled 19.7 9 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori 57 c1xahA_ not modelled 19.2 6 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+ 58 c1yqtA_ not modelled 18.5 17 PDB header:hydrolyase/translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: rnase-l inhibitor 59 d1wy5a1 not modelled 17.6 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 60 c3fiuD_ not modelled 17.6 10 PDB header:ligase Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nmn synthetase from francisella tularensis 61 c3c7tB_ not modelled 17.4 17 PDB header:hydrolase Chain: B: PDB Molecule:ecdysteroid-phosphate phosphatase; PDBTitle: crystal structure of the ecdysone phosphate phosphatase, eppase, from2 bombix mori in complex with tungstate 62 d1xhoa_ not modelled 16.6 9 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 63 d3bzka5 not modelled 15.7 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 64 c3ozxA_ not modelled 15.6 17 PDB header:hydrolase, translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain) 65 c3hjgB_ not modelled 14.8 12 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-ribazole-5'-phosphate phosphatase PDBTitle: crystal structure of putative alpha-ribazole-5'-phosphate2 phosphatase cobc from vibrio parahaemolyticus 66 d1v43a3 not modelled 14.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 67 c3q4gA_ not modelled 14.2 20 PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae 68 d1pjqa3 not modelled 13.9 19 Fold:Siroheme synthase middle domains-like Superfamily:Siroheme synthase middle domains-like Family:Siroheme synthase middle domains-like 69 c2p4sA_ not modelled 13.8 24 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: structure of purine nucleoside phosphorylase from anopheles gambiae in2 complex with dadme-immh 70 c3ju3A_ not modelled 13.2 14 PDB header:oxidoreductase Chain: A: PDB Molecule:probable 2-oxoacid ferredoxin oxidoreductase, alpha chain; PDBTitle: crystal structure of alpha chain of probable 2-oxoacid ferredoxin2 oxidoreductase from thermoplasma acidophilum 71 d1ujna_ not modelled 13.0 9 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Dehydroquinate synthase, DHQS 72 d1k6da_ not modelled 12.3 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 73 c2gruB_ not modelled 12.0 6 PDB header:lyase Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase; PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+ 74 d2hhja1 not modelled 11.5 10 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 75 c2ghiD_ not modelled 11.5 22 PDB header:transport protein Chain: D: PDB Molecule:transport protein; PDBTitle: crystal structure of plasmodium yoelii multidrug resistance2 protein 2 76 d3dhwc1 not modelled 11.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 77 c3dqqB_ not modelled 11.3 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative trna synthase; PDBTitle: the crystal structure of the putative trna synthase from salmonella2 typhimurium lt2 78 c3dl2A_ not modelled 11.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 3; PDBTitle: hexagonal structure of the ldh domain of human ubiquitin-2 conjugating enzyme e2-like isoform a 79 c3d4iD_ not modelled 11.0 15 PDB header:hydrolase Chain: D: PDB Molecule:sts-2 protein; PDBTitle: crystal structure of the 2h-phosphatase domain of sts-2 80 d1k6ma2 not modelled 10.7 13 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain 81 c3okfA_ not modelled 10.6 14 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae 82 c3bk7A_ not modelled 10.6 21 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 83 d1bifa2 not modelled 10.4 13 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain 84 d3d31a2 not modelled 10.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 85 d1dbfa_ not modelled 10.2 12 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 86 c2pcjB_ not modelled 10.2 17 PDB header:hydrolase Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold; PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5 87 d1g2912 not modelled 9.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 88 c3fvqB_ not modelled 9.9 23 PDB header:hydrolase Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc; PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp 89 c2i55C_ not modelled 9.7 18 PDB header:isomerase Chain: C: PDB Molecule:phosphomannomutase; PDBTitle: complex of glucose-1,6-bisphosphate with phosphomannomutase from2 leishmania mexicana 90 d1oxxk2 not modelled 9.6 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 91 d2gnoa2 not modelled 9.2 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 92 d1gpma1 not modelled 9.2 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 93 c2e21A_ not modelled 8.8 14 PDB header:ligase Chain: A: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus. 94 c3fzqA_ not modelled 8.7 12 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative haloacid dehalogenase-like hydrolase2 (yp_001086940.1) from clostridium difficile 630 at 2.10 a resolution 95 c1tcvB_ not modelled 8.6 21 PDB header:transferase Chain: B: PDB Molecule:purine-nucleoside phosphorylase; PDBTitle: crystal structure of the purine nucleoside phosphorylase2 from schistosoma mansoni in complex with non-detergent3 sulfobetaine 195 and acetate 96 c3c6kC_ not modelled 8.5 16 PDB header:transferase Chain: C: PDB Molecule:spermine synthase; PDBTitle: crystal structure of human spermine synthase in complex2 with spermidine and 5-methylthioadenosine 97 d1sgwa_ not modelled 8.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 98 c2cbzA_ not modelled 8.2 14 PDB header:transport Chain: A: PDB Molecule:multidrug resistance-associated protein 1; PDBTitle: structure of the human multidrug resistance protein 12 nucleotide binding domain 1 99 d2g39a2 not modelled 8.1 11 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0