PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1xtzA_

Fold library id	PDB Header	Molecule	Title
c1xtzA_	PDB header: isomerase	Chain: A: PDB Molecule: ribose-5-phosphate isomerase;	PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate2 isomerase: comparison with the archeal and bacterial3 enzymes

Links to external resources
Added to library: Tue Mar 16 12:12:12 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E D A K R A A A Y R A V D E N L K F D D H K I I G I G S G S T V V Y V A E R I G Q Y L H D P K F Y E V A S K F I C I P T G F Q S R N L I L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S T T S T T T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N K L Q L G S I E Q Y P R I D I A F D G A D E V D E N L Q L I K G G G A C L F Q E K L V S T S A K T F I V V A D S R K K S P K H L G K N W R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T
S
S
T T S
T T S
T T G G G B
S S S B T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q G V P I E I V P S S Y V R V K N D L L E Q L H A E K V D I R Q G G S A K A G P V V T D N N N F I I D A D F G E I S D P R K L H R E I K L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G T S
S
T T T
T T S
S S B S
T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . .

Sequence V G V V E T G L F I D N A S K A Y F G N S D G S V E V T E K H H H H H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
S
T T S
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	D	A	K	R	A	A	A	Y	R	A	V	D	E	N	L	K	F	D	D	H	K	I	I	G	I	G	S	G	S	T	V	V	Y	V	A	E	R	I	G	Q	Y	L	H	D	P	K	F	Y	E	V	A	S	K	F	I	C	I	P	T	G	F	Q	S	R	N	L	I	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	T										S	S	T												T	S	T	T	T					T	T						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	K	L	Q	L	G	S	I	E	Q	Y	P	R	I	D	I	A	F	D	G	A	D	E	V	D	E	N	L	Q	L	I	K	G	G	G	A	C	L	F	Q	E	K	L	V	S	T	S	A	K	T	F	I	V	V	A	D	S	R	K	K	S	P	K	H	L	G	K	N	W	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T						T	T	T			S									S				T	T	S						T	T	S										T	T										G	G	G	B		S	S	S	B	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	G	V	P	I	E	I	V	P	S	S	Y	V	R	V	K	N	D	L	L	E	Q	L	H	A	E	K	V	D	I	R	Q	G	G	S	A	K	A	G	P	V	V	T	D	N	N	N	F	I	I	D	A	D	F	G	E	I	S	D	P	R	K	L	H	R	E	I	K	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S								G	G	G											T	S			S								T	T	T								T	T	S									S	S	B	S											T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Sequence	V	G	V	V	E	T	G	L	F	I	D	N	A	S	K	A	Y	F	G	N	S	D	G	S	V	E	V	T	E	K	H	H	H	H	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T					S				S			S							T	T	S							S	T	T