Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	F	T	L	K	K	V	I	G	N	M	L	L	P	L	P	L	M	L	L	I	I	G	A	G	L	A	L	L	W	F	S	R	F	Q	K	T	G	K	I	F	I	S	I	G	W	L	A	L	L	L	L	S	L	Q	P	V	A	D
Secondary structure
SS confidence
Disorder		?	?																															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	L	L	R	P	I	E	S	T	Y	P	T	W	N	N	S	Q	K	V	D	Y	I	V	V	L	G	G	G	Y	T	W	N	P	Q	W	A	P	S	S	N	L	I	N	N	S	L	P	R	L	N	E	G	I	R	L	W	R	E	N	P
Secondary structure
SS confidence
Disorder									?				?	?	?																	?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	S	K	L	I	F	T	G	G	V	A	K	T	N	T	V	S	T	A	E	V	G	A	R	V	A	Q	S	L	G	V	P	R	E	Q	I	I	T	L	D	L	P	K	D	T	E	E	E	A	A	A	V	K	Q	A	I	G	D	A	P
Secondary structure
SS confidence
Disorder													?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	L	L	V	T	S	A	S	H	L	P	R	A	M	I	F	F	Q	Q	E	G	L	N	P	L	P	A	P	A	N	Q	L	A	I	D	S	P	L	N	P	W	E	R	A	I	P	S	P	V	W	L	M	H	S	D	R	V	G	Y	E
Secondary structure
SS confidence
Disorder																																			?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Sequence		T	L	G	R	I	W	Q	W	L	K	G	S	S	G	E	P	R	Q	E
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ca8 chain B Region: 60 - 209 Aligned: 133 Modelled: 134 Confidence: 99.9% Identity: 20% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme Phyre2 PDB 1c7q chain A Region: 79 - 221 Aligned: 127 Modelled: 134 Confidence: 92.8% Identity: 18% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 2q8n chain B Region: 77 - 210 Aligned: 112 Modelled: 121 Confidence: 92.2% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution Phyre2 PDB 2zf8 chain A Region: 100 - 163 Aligned: 64 Modelled: 63 Confidence: 91.1% Identity: 25% PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty Phyre2 PDB 2aiz chain P domain 1 Region: 100 - 164 Aligned: 65 Modelled: 65 Confidence: 89.9% Identity: 14% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 2h9a chain A Region: 101 - 210 Aligned: 87 Modelled: 95 Confidence: 89.4% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron- PDBTitle: corrinoid iron-sulfur protein Phyre2 PDB 2hqs chain C domain 1 Region: 96 - 164 Aligned: 69 Modelled: 69 Confidence: 86.6% Identity: 20% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 1zzg chain B Region: 76 - 226 Aligned: 126 Modelled: 138 Confidence: 86.2% Identity: 19% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8 Phyre2 PDB 3ff1 chain B Region: 80 - 210 Aligned: 111 Modelled: 118 Confidence: 85.1% Identity: 17% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus Phyre2 PDB 3m5u chain A Region: 139 - 210 Aligned: 72 Modelled: 72 Confidence: 84.9% Identity: 7% PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni Phyre2 PDB 3k13 chain A Region: 107 - 187 Aligned: 81 Modelled: 81 Confidence: 84.4% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron Phyre2 PDB 2wu8 chain A Region: 75 - 187 Aligned: 92 Modelled: 105 Confidence: 83.4% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv Phyre2 PDB 1u0f chain A Region: 75 - 187 Aligned: 92 Modelled: 100 Confidence: 81.7% Identity: 16% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 3khn chain B Region: 96 - 164 Aligned: 69 Modelled: 69 Confidence: 81.3% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. Phyre2 PDB 1t10 chain A Region: 75 - 187 Aligned: 92 Modelled: 113 Confidence: 80.5% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate Phyre2 PDB 2kgw chain A Region: 96 - 164 Aligned: 69 Modelled: 69 Confidence: 80.3% Identity: 20% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis Phyre2 PDB 3tr9 chain A Region: 101 - 175 Aligned: 75 Modelled: 75 Confidence: 78.4% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii Phyre2 PDB 2h9a chain B Region: 101 - 175 Aligned: 70 Modelled: 75 Confidence: 77.7% Identity: 9% PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein Phyre2 PDB 1q50 chain A Region: 75 - 187 Aligned: 92 Modelled: 100 Confidence: 77.6% Identity: 17% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 2o2c chain B Region: 75 - 187 Aligned: 92 Modelled: 100 Confidence: 77.6% Identity: 18% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site Phyre2 PDB 2vsn chain B Region: 78 - 250 Aligned: 151 Modelled: 151 Confidence: 66.2% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation Phyre2 1 c3ca8B_ 2 d1c7qa_ 3 c2q8nB_ 4 c2zf8A_ 5 d2aizp1 6 c2h9aA_ 7 d2hqsc1 8 c1zzgB_ 9 c3ff1B_ 10 c3m5uA_ 11 c3k13A_ 12 c2wu8A_ 13 d1u0fa_ 14 c3khnB_ 15 c1t10A_ 16 c2kgwA_ 17 c3tr9A_ 18 c2h9aB_ 19 d1q50a_ 20 c2o2cB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 c2vsnB_ 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ca8B_ 99.9 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 2 d1c7qa_ 92.8 18 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 3 c2q8nB_ 92.2 16 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution 4 c2zf8A_ 91.1 25 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 5 d2aizp1 89.9 14 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 6 c2h9aA_ 89.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron- PDBTitle: corrinoid iron-sulfur protein 7 d2hqsc1 86.6 20 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 8 c1zzgB_ 86.2 19 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8 9 c3ff1B_ 85.1 17 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus 10 c3m5uA_ 84.9 7 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni 11 c3k13A_ 84.4 17 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 12 c2wu8A_ 83.4 17 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv 13 d1u0fa_ 81.7 16 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 14 c3khnB_ 81.3 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. 15 c1t10A_ 80.5 17 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate 16 c2kgwA_ 80.3 20 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis 17 c3tr9A_ 78.4 11 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii 18 c2h9aB_ 77.7 9 PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein 19 d1q50a_ 77.6 17 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 20 c2o2cB_ 77.6 18 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site 21 c1r1mA_ not modelled 77.2 17 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis 22 d1r1ma_ not modelled 77.2 17 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 23 c2x5sB_ not modelled 74.8 19 PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. 24 c3oonA_ not modelled 74.0 12 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 25 c3f0hA_ not modelled 73.6 11 PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution 26 c3hjbA_ not modelled 73.6 12 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae. 27 c2l26A_ not modelled 72.9 24 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 28 c2k1sA_ not modelled 72.9 20 PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. 29 c2xdqA_ not modelled 72.6 9 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 30 c3nbuC_ not modelled 69.7 13 PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase 31 c3islA_ not modelled 68.9 10 PDB header:transferase Chain: A: PDB Molecule:purine catabolism protein pucg; PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis 32 d1iata_ not modelled 67.7 14 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 33 c2rgyA_ not modelled 67.5 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 34 c3p1tB_ not modelled 67.5 15 PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution 35 d1m32a_ not modelled 67.0 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 36 d2ioja1 not modelled 66.8 24 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 37 c3ez1A_ not modelled 66.7 15 PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution 38 c2vsnB_ 66.2 17 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 39 c3clkB_ not modelled 66.2 9 PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum 40 d1iuga_ not modelled 65.5 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 41 c3brqA_ not modelled 65.5 11 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 42 c2vefB_ not modelled 64.5 16 PDB header:transferase Chain: B: PDB Molecule:dihydropteroate synthase; PDBTitle: dihydropteroate synthase from streptococcus pneumoniae 43 c3pe3D_ not modelled 64.0 21 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 44 d1hm5a_ not modelled 63.8 15 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 45 d2ch1a1 not modelled 63.1 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 46 c3e3mA_ not modelled 62.8 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 47 c2yrrA_ not modelled 62.1 13 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8 48 c3pr3B_ not modelled 61.7 18 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate 49 d1vjoa_ not modelled 60.9 10 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 50 d1i60a_ not modelled 60.2 17 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 51 d1f6ya_ not modelled 59.3 20 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 52 d1ad1a_ not modelled 58.3 16 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 53 c2z9wA_ not modelled 58.3 15 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal 54 c3ljkA_ not modelled 58.0 18 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 55 c2yciX_ not modelled 57.7 14 PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native 56 d1gzda_ not modelled 57.4 15 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 57 d1ru8a_ not modelled 57.3 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 58 d1w23a_ not modelled 57.2 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 59 c3ldtA_ not modelled 57.0 20 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila 60 c2vp8A_ not modelled 56.7 19 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 61 d1bjna_ not modelled 56.1 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 62 c2zy3A_ not modelled 55.6 6 PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase 63 c3h5oB_ not modelled 55.5 12 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 64 c3egcF_ not modelled 55.3 15 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis 65 c3nnkC_ not modelled 55.0 11 PDB header:transferase Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase; PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway 66 c3cs3A_ not modelled 53.7 11 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 67 d2c0ra1 not modelled 53.0 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 68 d2nvma1 not modelled 52.7 19 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 69 d1p5dx1 not modelled 51.8 11 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 70 d2nlva1 not modelled 51.5 33 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 71 c2h0aA_ not modelled 50.7 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus 72 d1eyea_ not modelled 50.4 13 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 73 d2fug61 not modelled 50.2 31 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 74 c3d8uA_ not modelled 49.7 5 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 75 d2nwva1 not modelled 49.5 29 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 76 c3k4hA_ not modelled 49.4 12 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 77 d2ix4a2 not modelled 49.2 18 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 78 c3gv0A_ not modelled 48.8 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens 79 d1cqxa3 not modelled 48.6 16 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 80 c3d7qB_ not modelled 47.8 14 PDB header:unknown function Chain: B: PDB Molecule:xisi protein-like; PDBTitle: crystal structure of a xisi-like protein (npun_ar114) from nostoc2 punctiforme pcc 73102 at 2.30 a resolution 81 c2e1mA_ not modelled 47.6 22 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 82 c3hcwB_ not modelled 46.4 9 PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus 83 d3bofa1 not modelled 46.3 13 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 84 d1vk3a3 not modelled 45.5 16 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 85 d1t3ta6 not modelled 45.4 17 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 86 d1a3xa3 not modelled 44.6 18 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 87 d1ajza_ not modelled 43.9 14 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 88 c2r6hC_ not modelled 43.7 29 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis 89 c3ly1C_ not modelled 42.7 12 PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution 90 d1wyua1 not modelled 42.7 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P) 91 c1tx2A_ not modelled 42.4 14 PDB header:transferase Chain: A: PDB Molecule:dhps, dihydropteroate synthase; PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis 92 d1tx2a_ not modelled 42.4 14 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 93 c1y89B_ not modelled 42.0 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:devb protein; PDBTitle: crystal structure of devb protein 94 c3gybB_ not modelled 41.7 9 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum 95 c3d6kB_ not modelled 41.4 13 PDB header:transferase Chain: B: PDB Molecule:putative aminotransferase; PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae 96 c2j5tF_ not modelled 40.5 20 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 97 c2huuA_ not modelled 40.1 10 PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine 98 d2bkwa1 not modelled 39.4 8 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 99 c3getA_ not modelled 39.3 20 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution 100 d1e5ma2 not modelled 39.0 10 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 101 c3pplB_ not modelled 38.8 17 PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution 102 d2ji7a1 not modelled 38.3 9 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 103 d2gfva2 not modelled 37.4 17 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 104 c3nwyB_ not modelled 37.3 10 PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis 105 c3qk7C_ not modelled 36.8 6 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 106 d1xhca2 not modelled 36.2 21 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 107 c2vlbC_ not modelled 36.2 14 PDB header:lyase Chain: C: PDB Molecule:arylmalonate decarboxylase; PDBTitle: structure of unliganded arylmalonate decarboxylase 108 c2e7pC_ not modelled 36.1 16 PDB header:electron transport Chain: C: PDB Molecule:glutaredoxin; PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides 109 d1k77a_ not modelled 36.0 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Hypothetical protein YgbM (EC1530) 110 d1v77a_ not modelled 35.8 12 Fold:7-stranded beta/alpha barrel Superfamily:PHP domain-like Family:RNase P subunit p30 111 c3td4D_ not modelled 35.7 16 PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate 112 c2pjrF_ not modelled 34.7 13 PDB header:hydrolase/dna Chain: F: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex 113 c3dc1A_ not modelled 34.0 6 PDB header:transferase Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate 114 d2nzug1 not modelled 33.5 14 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 115 d1o1ya_ not modelled 33.4 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 116 c2y5sA_ not modelled 33.3 21 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 117 d1wyub1 not modelled 33.2 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P) 118 d5mdha1 not modelled 33.0 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 119 d1ozha1 not modelled 32.8 5 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 120 c3g85A_ not modelled 32.7 7 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0