Secondary structure and disorder prediction

1

.

.

.

.

.

.

.

.

10

.

.

.

.

.

.

.

.

.

20

.

.

.

.

.

.

.

.

.

30

.

.

.

.

.

.

.

.

.

40

.

.

.

.

.

.

.

.

.

50

.

.

.

.

.

.

.

.

.

60

Sequence

M

K

R

N

T

K

I

A

L

V

M

M

A

L

S

A

M

A

M

G

S

T

S

A

F

A

H

G

G

H

G

M

W

Q

Q

N

A

A

P

L

T

S

E

Q

Q

T

A

W

Q

K

I

H

N

D

F

Y

A

Q

S

S

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

70

.

.

.

.

.

.

.

.

.

80

.

.

.

.

.

.

.

.

.

90

.

.

.

.

.

.

.

.

.

100

.

.

.

.

.

.

.

.

.

110

.

.

.

.

.

.

.

.

.

120

Sequence

A

L

Q

Q

Q

L

V

T

K

R

Y

E

Y

N

A

L

L

A

A

N

P

P

D

S

S

K

I

N

A

V

A

K

E

M

E

N

L

R

Q

S

L

D

E

L

R

V

K

R

D

I

A

M

A

E

A

G

I

P

R

G

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

130

.

.

.

.

.

.

.

.

.

140

.

Sequence

A

G

M

G

M

G

Y

G

G

C

G

G

G

G

H

M

G

M

G

H

W

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3lay chain F Region: 40 - 117 Aligned: 78 Modelled: 78 Confidence: 99.8% Identity: 71% PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 Phyre2 PDB 3epv chain B Region: 33 - 119 Aligned: 87 Modelled: 87 Confidence: 99.3% Identity: 16% PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms Phyre2 PDB 3qzc chain A Region: 38 - 118 Aligned: 78 Modelled: 81 Confidence: 99.0% Identity: 17% PDB header:signaling protein Chain: A: PDB Molecule:periplasmic protein cpxp; PDBTitle: structure of the periplasmic stress response protein cpxp Phyre2 PDB 3oeo chain D Region: 38 - 118 Aligned: 78 Modelled: 81 Confidence: 98.9% Identity: 17% PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy Phyre2 PDB 3o39 chain A Region: 38 - 118 Aligned: 78 Modelled: 81 Confidence: 98.9% Identity: 17% PDB header:chaperone Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation; PDBTitle: crystal structure of spy Phyre2 PDB 3itf chain A Region: 38 - 119 Aligned: 79 Modelled: 82 Confidence: 98.9% Identity: 14% PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein Phyre2 PDB 1gqe chain A Region: 47 - 105 Aligned: 59 Modelled: 59 Confidence: 83.6% Identity: 22% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 1j1e chain C Region: 35 - 108 Aligned: 60 Modelled: 60 Confidence: 78.7% Identity: 17% PDB header:contractile protein Chain: C: PDB Molecule:troponin i; PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form Phyre2 PDB 2w6a chain B Region: 57 - 105 Aligned: 49 Modelled: 49 Confidence: 77.0% Identity: 20% PDB header:signaling protein Chain: B: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: x-ray structure of the dimeric git1 coiled-coil domain Phyre2 PDB 2gl2 chain B Region: 41 - 115 Aligned: 71 Modelled: 75 Confidence: 75.4% Identity: 15% PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada Phyre2 PDB 1ei3 chain E Region: 42 - 114 Aligned: 73 Modelled: 73 Confidence: 73.7% Identity: 5% PDB header: PDB COMPND: Phyre2 PDB 3oja chain B Region: 43 - 115 Aligned: 73 Modelled: 73 Confidence: 72.3% Identity: 15% PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 3ghg chain K Region: 43 - 114 Aligned: 72 Modelled: 72 Confidence: 70.9% Identity: 8% PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen Phyre2 PDB 1deq chain F Region: 43 - 101 Aligned: 59 Modelled: 59 Confidence: 68.7% Identity: 12% PDB header: PDB COMPND: Phyre2 PDB 3bt6 chain B Region: 10 - 123 Aligned: 103 Modelled: 114 Confidence: 68.0% Identity: 21% PDB header:viral protein Chain: B: PDB Molecule:influenza b hemagglutinin (ha); PDBTitle: crystal structure of influenza b virus hemagglutinin Phyre2 PDB 2ke4 chain A Region: 30 - 120 Aligned: 85 Modelled: 91 Confidence: 67.8% Identity: 16% PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 Phyre2 PDB 1deq chain O Region: 43 - 105 Aligned: 63 Modelled: 63 Confidence: 67.7% Identity: 8% PDB header: PDB COMPND: Phyre2 PDB 3hnw chain B Region: 43 - 103 Aligned: 61 Modelled: 61 Confidence: 67.3% Identity: 13% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 Phyre2 PDB 1cun chain A domain 2 Region: 41 - 115 Aligned: 75 Modelled: 75 Confidence: 67.1% Identity: 16% Fold: Spectrin repeat-like Superfamily: Spectrin repeat Family: Spectrin repeat Phyre2 PDB 1yv0 chain I Region: 34 - 105 Aligned: 57 Modelled: 58 Confidence: 66.8% Identity: 21% PDB header:contractile protein Chain: I: PDB Molecule:troponin i, fast skeletal muscle; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 free state Phyre2 1 c3layF_ 2 c3epvB_ 3 c3qzcA_ 4 c3oeoD_ 5 c3o39A_ 6 c3itfA_ 7 d1gqea_ 8 c1j1eC_ 9 c2w6aB_ 10 c2gl2B_ 11 c1ei3E_ 12 c3ojaB_ 13 c3ghgK_ 14 c1deqF_ 15 c3bt6B_ 16 c2ke4A_ 17 c1deqO_ 18 c3hnwB_ 19 d1cuna2 20 c1yv0I_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3layF_ 99.8 71 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 2 c3epvB_ 99.3 16 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 3 c3qzcA_ 99.0 17 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic protein cpxp; PDBTitle: structure of the periplasmic stress response protein cpxp 4 c3oeoD_ 98.9 17 PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy 5 c3o39A_ 98.9 17 PDB header:chaperone Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation; PDBTitle: crystal structure of spy 6 c3itfA_ 98.9 14 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein 7 d1gqea_ 83.6 22 Fold:Release factor Superfamily:Release factor Family:Release factor 8 c1j1eC_ 78.7 17 PDB header:contractile protein Chain: C: PDB Molecule:troponin i; PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form 9 c2w6aB_ 77.0 20 PDB header:signaling protein Chain: B: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: x-ray structure of the dimeric git1 coiled-coil domain 10 c2gl2B_ 75.4 15 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 11 c1ei3E_ 73.7 5 PDB header: PDB COMPND: 12 c3ojaB_ 72.3 15 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 13 c3ghgK_ 70.9 8 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 14 c1deqF_ 68.7 12 PDB header: PDB COMPND: 15 c3bt6B_ 68.0 21 PDB header:viral protein Chain: B: PDB Molecule:influenza b hemagglutinin (ha); PDBTitle: crystal structure of influenza b virus hemagglutinin 16 c2ke4A_ 67.8 16 PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 17 c1deqO_ 67.7 8 PDB header: PDB COMPND: 18 c3hnwB_ 67.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 19 d1cuna2 67.1 16 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 20 c1yv0I_ 66.8 21 PDB header:contractile protein Chain: I: PDB Molecule:troponin i, fast skeletal muscle; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 free state 21 c2gd7B_ not modelled 63.5 12 PDB header:transcription Chain: B: PDB Molecule:hexim1 protein; PDBTitle: the structure of the cyclin t-binding domain of hexim12 reveals the molecular basis for regulation of3 transcription elongation 22 d1s35a2 not modelled 63.4 16 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 23 c3kltB_ not modelled 59.4 13 PDB header:structural protein Chain: B: PDB Molecule:vimentin; PDBTitle: crystal structure of a vimentin fragment 24 c2w9yA_ not modelled 53.6 12 PDB header:lipid transport Chain: A: PDB Molecule:fatty acid/retinol binding protein protein 7, PDBTitle: the structure of the lipid binding protein ce-far-7 from2 caenorhabditis elegans 25 c2iakA_ not modelled 53.3 16 PDB header:cell adhesion Chain: A: PDB Molecule:bullous pemphigoid antigen 1, isoform 5; PDBTitle: crystal structure of a protease resistant fragment of the plakin2 domain of bullous pemphigoid antigen1 (bpag1) 26 d2spca_ not modelled 51.1 19 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 27 c2v7sA_ not modelled 50.2 19 PDB header:unknown function Chain: A: PDB Molecule:probable conserved lipoprotein lppa; PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis 28 d2oeza1 not modelled 49.1 23 Fold:YacF-like Superfamily:YacF-like Family:YacF-like 29 c2jo8B_ not modelled 49.0 10 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) 30 c3m9bK_ not modelled 48.1 17 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 31 d1vqov1 not modelled 48.0 17 Fold:Long alpha-hairpin Superfamily:Ribosomal protein L29 (L29p) Family:Ribosomal protein L29 (L29p) 32 c2a3dA_ not modelled 46.5 23 PDB header:three-helix bundle Chain: A: PDB Molecule:protein (de novo three-helix bundle); PDBTitle: solution structure of a de novo designed single chain three-2 helix bundle (a3d) 33 c3d5cX_ not modelled 46.5 17 PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. 34 c3ls1A_ not modelled 45.4 18 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 35 d1quua1 not modelled 44.3 16 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 36 c1wpaA_ not modelled 42.6 17 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: 1.5 angstrom crystal structure of human occludin fragment2 413-522 37 c1xzqA_ not modelled 40.9 13 PDB header:hydrolase Chain: A: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf 38 c2xdjF_ not modelled 40.8 12 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 39 c2js5B_ not modelled 40.1 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of protein q60c73_metca. northeast structural2 genomics consortium target mcr1 40 d1u5pa1 not modelled 39.7 16 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 41 c2fxmB_ not modelled 38.5 10 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 42 c1deqD_ not modelled 38.3 17 PDB header: PDB COMPND: 43 c2j375_ not modelled 38.1 16 PDB header:ribosome Chain: 5: PDB Molecule:ribosomal protein l35; PDBTitle: model of mammalian srp bound to 80s rncs 44 c2eqbC_ not modelled 38.0 13 PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex 45 d1u5pa2 not modelled 37.8 14 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 46 c3kbtA_ not modelled 37.4 13 PDB header:structural protein Chain: A: PDB Molecule:spectrin beta chain, erythrocyte; PDBTitle: crystal structure of the ankyrin binding domain of human erythroid2 beta spectrin (repeats 13-15) in complex with the spectrin binding3 domain of human erythroid ankyrin (zu5-ank) 47 d1s35a1 not modelled 36.4 9 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 48 d1cxzb_ not modelled 36.3 14 Fold:Long alpha-hairpin Superfamily:HR1 repeat Family:HR1 repeat 49 c3hizB_ not modelled 36.2 15 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 50 c2oszA_ not modelled 35.8 10 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 51 c2c5iT_ not modelled 35.7 20 PDB header:protein transport Chain: T: PDB Molecule:t-snare affecting a late golgi compartment PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation 52 c2p2uA_ not modelled 35.4 15 PDB header:dna binding protein Chain: A: PDB Molecule:host-nuclease inhibitor protein gam, putative; PDBTitle: crystal structure of putative host-nuclease inhibitor2 protein gam from desulfovibrio vulgaris 53 c2zkrv_ not modelled 34.2 11 PDB header:ribosomal protein/rna Chain: V: PDB Molecule:rna expansion segment es9 part2; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 54 c3csxA_ not modelled 33.4 18 PDB header:metal binding protein,unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structural characterization of a protein in the duf6832 family- crystal structure of cce_0567 from the3 cyanobacterium cyanothece 51142. 55 d1st6a3 not modelled 32.3 19 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 56 c3ol1A_ not modelled 30.7 8 PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b 57 d1uklc_ not modelled 30.6 22 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 58 d1olma1 not modelled 29.8 17 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 59 c3f31B_ not modelled 29.4 17 PDB header:actin binding, structural protein Chain: B: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure of the n-terminal region of alphaii-spectrin2 tetramerization domain 60 c3m0dC_ not modelled 29.4 13 PDB header:signaling protein Chain: C: PDB Molecule:tnf receptor-associated factor 1; PDBTitle: crystal structure of the traf1:traf2:ciap2 complex 61 c2ihr1_ not modelled 28.8 26 PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus 62 c3gehA_ not modelled 28.7 16 PDB header:hydrolase Chain: A: PDB Molecule:trna modification gtpase mnme; PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn 63 c3hfdA_ not modelled 28.6 9 PDB header:chaperone, protein transport Chain: A: PDB Molecule:nucleosome assembly protein 1; PDBTitle: nucleosome assembly protein 1 from plasmodium knowlesi 64 c2j8pA_ not modelled 27.9 22 PDB header:nuclear protein Chain: A: PDB Molecule:cleavage stimulation factor 64 kda subunit; PDBTitle: nmr structure of c-terminal domain of human cstf-64 65 c3fs3A_ not modelled 27.3 11 PDB header:chaperone Chain: A: PDB Molecule:nucleosome assembly protein 1, putative; PDBTitle: crystal structure of malaria parasite nucleosome assembly protein2 (nap) 66 c2an7A_ not modelled 26.9 15 PDB header:dna binding protein Chain: A: PDB Molecule:protein pard; PDBTitle: solution structure of the bacterial antidote pard 67 c3ni0A_ not modelled 26.9 20 PDB header:immune system Chain: A: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain 68 c1xawA_ not modelled 26.6 19 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: crystal structure of the cytoplasmic distal c-terminal2 domain of occludin 69 c1s35A_ not modelled 26.4 16 PDB header:structural protein Chain: A: PDB Molecule:spectrin beta chain, erythrocyte; PDBTitle: crystal structure of repeats 8 and 9 of human erythroid2 spectrin 70 d1st6a4 not modelled 26.0 27 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 71 d1ydxa1 not modelled 25.6 13 Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:Type I restriction modification DNA specificity domain 72 c3bhpA_ not modelled 25.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: crystal structure of upf0291 protein ynzc from bacillus2 subtilis at resolution 2.0 a. northeast structural3 genomics consortium target sr384 73 d1akha_ not modelled 25.4 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 74 c3ghgD_ not modelled 25.0 15 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 75 d1lvaa3 not modelled 24.7 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 76 c2no2A_ not modelled 24.5 14 PDB header:cell adhesion Chain: A: PDB Molecule:huntingtin-interacting protein 1; PDBTitle: crystal structure of the dllrkn-containing coiled-coil2 domain of huntingtin-interacting protein 1 77 c3u59C_ not modelled 24.3 10 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 78 c3qh9A_ not modelled 23.9 13 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 79 d1ykhb1 not modelled 23.7 16 Fold:Mediator hinge subcomplex-like Superfamily:Mediator hinge subcomplex-like Family:CSE2-like 80 d1hcia4 not modelled 23.5 12 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 81 c3m5gD_ not modelled 22.4 16 PDB header:viral protein Chain: D: PDB Molecule:hemagglutinin; PDBTitle: crystal structure of a h7 influenza virus hemagglutinin 82 c2nrjA_ not modelled 22.2 14 PDB header:toxin Chain: A: PDB Molecule:hbl b protein; PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus 83 c3a7mA_ not modelled 21.9 12 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid 84 c2q9qC_ not modelled 21.9 16 PDB header:replication Chain: C: PDB Molecule:dna replication complex gins protein psf1; PDBTitle: the crystal structure of full length human gins complex 85 c2jeeA_ not modelled 21.8 14 PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu 86 c2xusA_ not modelled 21.6 20 PDB header:protein binding Chain: A: PDB Molecule:breast cancer metastasis-suppressor 1; PDBTitle: crystal structure of the brms1 n-terminal region 87 c1jccC_ not modelled 21.5 11 PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations 88 d2e9xa1 not modelled 21.5 16 Fold:GINS helical bundle-like Superfamily:GINS helical bundle-like Family:PSF1 N-terminal domain-like 89 c2v6lI_ not modelled 21.3 20 PDB header:protein transport Chain: I: PDB Molecule:mxih; PDBTitle: molecular model of a type iii secretion system needle 90 c1gk6B_ not modelled 21.3 10 PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b) 91 c1m1jA_ not modelled 21.2 17 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 92 c1avyA_ not modelled 20.0 30 PDB header:coiled coil Chain: A: PDB Molecule:fibritin; PDBTitle: fibritin deletion mutant m (bacteriophage t4) 93 c3geiB_ not modelled 19.8 18 PDB header:hydrolase Chain: B: PDB Molecule:trna modification gtpase mnme; PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp 94 d2hgq11 not modelled 19.7 13 Fold:Long alpha-hairpin Superfamily:Ribosomal protein L29 (L29p) Family:Ribosomal protein L29 (L29p) 95 c1cunC_ not modelled 19.7 16 PDB header:structural protein Chain: C: PDB Molecule:protein (alpha spectrin); PDBTitle: crystal structure of repeats 16 and 17 of chicken brain2 alpha spectrin 96 c3b7qA_ not modelled 19.4 19 PDB header:signaling protein Chain: A: PDB Molecule:uncharacterized protein ykl091c; PDBTitle: crystal structure of yeast sec14 homolog sfh1 in complex with2 phosphatidylcholine 97 c1ox3A_ not modelled 19.2 26 PDB header:chaperone Chain: A: PDB Molecule:fibritin; PDBTitle: crystal structure of mini-fibritin 98 c1stzB_ not modelled 18.7 18 PDB header:transcription Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog; PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution 99 c1jsdB_ not modelled 18.6 18 PDB header:viral protein Chain: B: PDB Molecule:haemagglutinin (ha2 chain); PDBTitle: crystal structure of swine h9 haemagglutinin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0