PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2iakA_

Fold library id	PDB Header	Molecule	Title
c2iakA_	PDB header: cell adhesion	Chain: A: PDB Molecule: bullous pemphigoid antigen 1, isoform 5;	PDBTitle: crystal structure of a protease resistant fragment of the2 plakin domain of bullous pemphigoid antigen1 (bpag1)

Links to external resources
Added to library: Tue Mar 16 12:23:03 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q I R K P L L K S S L L D Q N L T E E E V N M K F V Q D L L N W V D E M Q V Q L D R T E W G S D L P S V E S H L E N H K N V H R A I E E F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S S S
-
T
S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S S L K E A K I S E I Q M T A P L K L S Y T D K L H R L E S Q Y A K L L N T S R N Q E R H L D T L H N F V T R A T N E L I W L N E K E E S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . .

Sequence V A Y H A E L M R E L E Q K E E S I K A V Q E I A E Q L L L E N H P A R L T I E A Y R A A M Q T Q W S W I L Q L C Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	I	R	K	P	L	L	K	S	S	L	L	D	Q	N	L	T	E	E	E	V	N	M	K	F	V	Q	D	L	L	N	W	V	D	E	M	Q	V	Q	L	D	R	T	E	W	G	S	D	L	P	S	V	E	S	H	L	E	N	H	K	N	V	H	R	A	I	E	E	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								G	G	G	G	S	S	S										-																		T					S	S																					T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	S	L	K	E	A	K	I	S	E	I	Q	M	T	A	P	L	K	L	S	Y	T	D	K	L	H	R	L	E	S	Q	Y	A	K	L	L	N	T	S	R	N	Q	E	R	H	L	D	T	L	H	N	F	V	T	R	A	T	N	E	L	I	W	L	N	E	K	E	E	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										G	G	G			T	T																			T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Sequence	V	A	Y	H	A	E	L	M	R	E	L	E	Q	K	E	E	S	I	K	A	V	Q	E	I	A	E	Q	L	L	L	E	N	H	P	A	R	L	T	I	E	A	Y	R	A	A	M	Q	T	Q	W	S	W	I	L	Q	L	C	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S																									T	T		T	T