Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	W	R	R	I	V	W	L	L	A	L	V	T	L	P	T	L	A	E	E	T	P	L	Q	L	V	L	R	G	A	Q	H	D	Q	L	Y	Q	L	S	S	S	G	V	T	K	V	S	A	L	P	D	S	L	T	T	P	L	G	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?										?	?	?	?	?	?																						?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	W	K	L	Y	V	Y	A	W	L	E	D	T	H	Q	P	E	Q	P	Y	Q	C	R	G	N	S	P	E	E	V	Y	C	C	Q	A	G	E	S	I	T	R	D	T	A	L	V	R	S	C	G	L	Y	F	A	P	Q	R	L	H	I
Secondary structure
SS confidence
Disorder																		?				?	?	?	?	?												?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	A	D	V	W	G	Q	Y	W	Q	Q	R	Q	A	P	A	W	L	A	S	L	T	T	L	K	P	E	T	S	V	T	V	K	S	L	L	D	S	L	A	T	L	P	A	Q	N	K	A	Q	E	V	L	L	D	V	V	L	D	E	A
Secondary structure
SS confidence
Disorder														?										?	?	?	?	?	?	?	?											?	?	?	?	?											?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	I	G	V	A	S	M	L	G	S	R	V	R	V	K	T	W	S	W	F	A	D	D	K	Q	E	I	R	Q	G	G	F	A	G	W	L	T	D	G	T	P	L	W	V	T	G	S	G	T	S	K	T	V	L	T	R	Y	A	T	V
Secondary structure
SS confidence
Disorder		?	?					?	?	?												?	?	?	?	?	?	?	?	?	?	?	?																								?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	N	R	V	L	P	V	P	T	Q	V	A	S	G	Q	C	V	E	V	E	L	F	A	R	Y	P	L	K	K	I	T	A	E	K	S	T	T	A	V	N	P	G	V	L	N	G	R	Y	R	V	T	F	T	N	G	N	H	I	T	F
Secondary structure
SS confidence
Disorder		?	?				?	?	?	?	?	?	?	?	?																		?	?	?	?	?	?	?	?	?	?	?	?	?											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	S	H	G	E	T	T	L	L	S	E	K	G	K	L	K	L	Q	S	H	L	D	R	E	E	Y	V	A	R	V	L	D	R	E	A	K	S	T	P	P	E	A	A	K	A	M	T	V	A	I	R	T	F	L	Q	Q	N	A	N	R
Secondary structure
SS confidence
Disorder												?																					?	?	?	?	?	?	?	?																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		E	G	D	C	L	T	I	P	D	S	S	A	T	Q	R	V	S	A	S	P	A	T	T	G	A	R	T	M	T	A	W	T	Q	D	L	I	Y	A	G	D	P	V	H	Y	H	G	S	R	A	T	E	G	T	L	S	W	R	Q	A	T
Secondary structure
SS confidence
Disorder		?	?	?													?	?	?	?	?	?	?										?										?					?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		A	Q	A	G	Q	G	E	R	Y	D	Q	I	L	A	F	A	Y	P	D	N	S	L	S	R	W	G	A	P	R	S	T	C	Q	L	L	P	K	A	K	A	W	L	A	K	K	M	P	Q	W	R	R	I	L	Q	A	E	T	G	Y	N
Secondary structure
SS confidence
Disorder						?																	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?							?	?	?					?	?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		E	P	D	V	F	A	V	C	R	L	V	S	G	F	P	Y	T	D	R	Q	Q	K	R	L	F	I	R	N	F	F	T	L	Q	D	R	L	D	L	T	H	E	Y	L	H	L	A	F	D	G	Y	P	T	G	L	D	E	N	Y	I	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		T	L	T	R	Q	L	L	M	D
Secondary structure
SS confidence
Disorder							?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jc7 chain A Region: 57 - 224 Aligned: 158 Modelled: 168 Confidence: 96.6% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase oxa-24; PDBTitle: the crystal structure of the carbapenemase oxa-24 reveals2 new insights into the mechanism of carbapenem-hydrolysis Phyre2 PDB 3oc2 chain A Region: 57 - 254 Aligned: 188 Modelled: 189 Confidence: 96.3% Identity: 17% PDB header:penicillin-binding protein Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa Phyre2 PDB 3if6 chain C Region: 57 - 224 Aligned: 147 Modelled: 168 Confidence: 96.1% Identity: 20% PDB header:hydrolase Chain: C: PDB Molecule:oxa-46 oxacillinase; PDBTitle: crystal structure of oxa-46 beta-lactamase from p.2 aeruginosa Phyre2 PDB 3lo7 chain A Region: 57 - 162 Aligned: 106 Modelled: 106 Confidence: 96.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein a; PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis Phyre2 PDB 1k55 chain A Region: 57 - 224 Aligned: 161 Modelled: 168 Confidence: 95.4% Identity: 15% Fold: beta-lactamase/transpeptidase-like Superfamily: beta-lactamase/transpeptidase-like Family: beta-Lactamase/D-ala carboxypeptidase Phyre2 PDB 1nrf chain A Region: 57 - 224 Aligned: 160 Modelled: 162 Confidence: 95.1% Identity: 14% Fold: beta-lactamase/transpeptidase-like Superfamily: beta-lactamase/transpeptidase-like Family: beta-Lactamase/D-ala carboxypeptidase Phyre2 PDB 3hbr chain D Region: 57 - 224 Aligned: 157 Modelled: 168 Confidence: 94.6% Identity: 16% PDB header:hydrolase Chain: D: PDB Molecule:oxa-48; PDBTitle: crystal structure of oxa-48 beta-lactamase Phyre2 PDB 1xa1 chain A Region: 57 - 224 Aligned: 158 Modelled: 168 Confidence: 94.5% Identity: 16% Fold: beta-lactamase/transpeptidase-like Superfamily: beta-lactamase/transpeptidase-like Family: beta-Lactamase/D-ala carboxypeptidase Phyre2 PDB 3equ chain B Region: 57 - 224 Aligned: 163 Modelled: 168 Confidence: 94.3% Identity: 17% PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae Phyre2 PDB 3udi chain A Region: 57 - 225 Aligned: 160 Modelled: 169 Confidence: 94.1% Identity: 19% PDB header:penicillin-binding protein/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 1a; PDBTitle: crystal structure of acinetobacter baumannii pbp1a in complex with2 penicillin g Phyre2 PDB 1k38 chain A Region: 57 - 224 Aligned: 154 Modelled: 168 Confidence: 93.9% Identity: 18% Fold: beta-lactamase/transpeptidase-like Superfamily: beta-lactamase/transpeptidase-like Family: beta-Lactamase/D-ala carboxypeptidase Phyre2 PDB 2iwd chain A Region: 57 - 224 Aligned: 159 Modelled: 168 Confidence: 93.7% Identity: 12% PDB header:antibiotic resistance Chain: A: PDB Molecule:methicillin resistance mecr1 protein; PDBTitle: oxacilloyl-acylated mecr1 extracellular antibiotic-sensor2 domain. Phyre2 PDB 3ue3 chain A Region: 57 - 252 Aligned: 195 Modelled: 196 Confidence: 93.1% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:septum formation, penicillin binding protein 3, PDBTitle: crystal structure of acinetobacter baumanni pbp3 Phyre2 PDB 3pbq chain A Region: 57 - 243 Aligned: 182 Modelled: 187 Confidence: 92.8% Identity: 19% PDB header:hydrolase/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of pbp3 complexed with imipenem Phyre2 PDB 1vqq chain A domain 3 Region: 56 - 245 Aligned: 187 Modelled: 190 Confidence: 91.9% Identity: 16% Fold: beta-lactamase/transpeptidase-like Superfamily: beta-lactamase/transpeptidase-like Family: beta-Lactamase/D-ala carboxypeptidase Phyre2 PDB 2olv chain A Region: 57 - 225 Aligned: 165 Modelled: 167 Confidence: 89.5% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex Phyre2 PDB 1rp5 chain A domain 4 Region: 57 - 133 Aligned: 77 Modelled: 77 Confidence: 88.8% Identity: 16% Fold: beta-lactamase/transpeptidase-like Superfamily: beta-lactamase/transpeptidase-like Family: beta-Lactamase/D-ala carboxypeptidase Phyre2 PDB 1pyy chain A domain 4 Region: 57 - 133 Aligned: 77 Modelled: 77 Confidence: 88.1% Identity: 14% Fold: beta-lactamase/transpeptidase-like Superfamily: beta-lactamase/transpeptidase-like Family: beta-Lactamase/D-ala carboxypeptidase Phyre2 PDB 1qmf chain A Region: 57 - 133 Aligned: 77 Modelled: 77 Confidence: 87.7% Identity: 16% PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:penicillin-binding protein 2x; PDBTitle: penicillin-binding protein 2x (pbp-2x) acyl-enzyme complex Phyre2 PDB 1pmd chain A Region: 57 - 133 Aligned: 77 Modelled: 77 Confidence: 86.9% Identity: 16% PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x) Phyre2 PDB 1t6s chain B Region: 306 - 350 Aligned: 45 Modelled: 45 Confidence: 63.6% Identity: 9% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum Phyre2 PDB 2z99 chain A Region: 306 - 350 Aligned: 45 Modelled: 45 Confidence: 63.2% Identity: 16% PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis Phyre2 PDB 3dtk chain A Region: 498 - 548 Aligned: 51 Modelled: 51 Confidence: 52.0% Identity: 31% PDB header:gene regulation Chain: A: PDB Molecule:irre protein; PDBTitle: crystal structure of the irre protein, a central regulator2 of dna damage repair in deinococcaceae Phyre2 1 c2jc7A_ 2 c3oc2A_ 3 c3if6C_ 4 c3lo7A_ 5 d1k55a_ 6 d1nrfa_ 7 c3hbrD_ 8 d1xa1a_ 9 c3equB_ 10 c3udiA_ 11 d1k38a_ 12 c2iwdA_ 13 c3ue3A_ 14 c3pbqA_ 15 d1vqqa3 16 c2olvA_ 17 d1rp5a4 18 d1pyya4 19 c1qmfA_ 20 c1pmdA_ 21 22 23 24 25 26 27 28 29 30 c1t6sB_ 31 c2z99A_ 32 33 c3dtkA_ 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jc7A_ 96.6 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase oxa-24; PDBTitle: the crystal structure of the carbapenemase oxa-24 reveals2 new insights into the mechanism of carbapenem-hydrolysis 2 c3oc2A_ 96.3 17 PDB header:penicillin-binding protein Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa 3 c3if6C_ 96.1 20 PDB header:hydrolase Chain: C: PDB Molecule:oxa-46 oxacillinase; PDBTitle: crystal structure of oxa-46 beta-lactamase from p.2 aeruginosa 4 c3lo7A_ 96.0 23 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein a; PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis 5 d1k55a_ 95.4 15 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 6 d1nrfa_ 95.1 14 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 7 c3hbrD_ 94.6 16 PDB header:hydrolase Chain: D: PDB Molecule:oxa-48; PDBTitle: crystal structure of oxa-48 beta-lactamase 8 d1xa1a_ 94.5 16 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 9 c3equB_ 94.3 17 PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae 10 c3udiA_ 94.1 19 PDB header:penicillin-binding protein/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 1a; PDBTitle: crystal structure of acinetobacter baumannii pbp1a in complex with2 penicillin g 11 d1k38a_ 93.9 18 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 12 c2iwdA_ 93.7 12 PDB header:antibiotic resistance Chain: A: PDB Molecule:methicillin resistance mecr1 protein; PDBTitle: oxacilloyl-acylated mecr1 extracellular antibiotic-sensor2 domain. 13 c3ue3A_ 93.1 19 PDB header:transferase Chain: A: PDB Molecule:septum formation, penicillin binding protein 3, PDBTitle: crystal structure of acinetobacter baumanni pbp3 14 c3pbqA_ 92.8 19 PDB header:hydrolase/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of pbp3 complexed with imipenem 15 d1vqqa3 91.9 16 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 16 c2olvA_ 89.5 16 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex 17 d1rp5a4 88.8 16 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 18 d1pyya4 88.1 14 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 19 c1qmfA_ 87.7 16 PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:penicillin-binding protein 2x; PDBTitle: penicillin-binding protein 2x (pbp-2x) acyl-enzyme complex 20 c1pmdA_ 86.9 16 PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x) 21 c2bg1A_ not modelled 86.6 17 PDB header:peptidoglycan Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: active site restructuring regulates ligand recognition in2 classa penicillin-binding proteins (pbps) 22 d1mr1c_ not modelled 84.0 30 Fold:SAND domain-like Superfamily:SAND domain-like Family:SMAD4-binding domain of oncoprotein Ski 23 c3fwlA_ not modelled 82.9 16 PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli 24 d2c5wb1 not modelled 82.6 18 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 25 c3dwkC_ not modelled 81.1 19 PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer 26 d2bg1a1 not modelled 79.7 18 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 27 c2wadB_ not modelled 78.0 21 PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) 28 c2jciA_ not modelled 77.9 19 PDB header:drug-binding protein Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: structural insights into the catalytic mechanism and the2 role of streptococcus pneumoniae pbp1b 29 c1mwuA_ not modelled 70.8 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:penicillin-binding protein 2a; PDBTitle: structure of methicillin acyl-penicillin binding protein 2a2 from methicillin resistant staphylococcus aureus strain3 27r at 2.60 a resolution. 30 c1t6sB_ 63.6 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum 31 c2z99A_ 63.2 16 PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis 32 d2olua2 not modelled 61.1 18 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 33 c3dtkA_ 52.0 31 PDB header:gene regulation Chain: A: PDB Molecule:irre protein; PDBTitle: crystal structure of the irre protein, a central regulator2 of dna damage repair in deinococcaceae 34 c2xftA_ not modelled 41.4 17 PDB header:hydrolase Chain: A: PDB Molecule:orf12; PDBTitle: structural and mechanistic studies on a cephalosporin esterase from2 the clavulanic acid biosynthesis pathway 35 c3gwrA_ not modelled 41.1 8 PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution 36 d3elga1 not modelled 35.4 26 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 37 d1m6ka_ not modelled 32.8 14 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 38 d1dy6a_ not modelled 31.4 19 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 39 c2hcbC_ not modelled 30.4 35 PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus 40 c2dafA_ not modelled 28.1 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flj35834 protein; PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human hypothetical protein flj35834 41 c3k7cC_ not modelled 27.8 25 PDB header:protein binding Chain: C: PDB Molecule:putative ntf2-like transpeptidase; PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution 42 d2pf5a1 not modelled 27.6 50 Fold:C-type lectin-like Superfamily:C-type lectin-like Family:Link domain 43 c1aduB_ not modelled 25.7 28 PDB header:dna-binding protein Chain: B: PDB Molecule:adenovirus single-stranded dna-binding protein; PDBTitle: early e2a dna-binding protein 44 c1wg8B_ not modelled 25.6 40 PDB header:transferase Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8. 45 c1m6yA_ not modelled 23.3 33 PDB header:transferase Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw; PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah 46 d3duea1 not modelled 23.3 29 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 47 d3cnxa1 not modelled 22.5 13 Fold:Cystatin-like Superfamily:NTF2-like Family:SAV4671-like 48 c1zb7A_ not modelled 20.2 28 PDB header:toxin Chain: A: PDB Molecule:neurotoxin; PDBTitle: crystal structure of botulinum neurotoxin type g light chain 49 d1l8qa2 not modelled 18.4 35 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 50 c3g5jA_ not modelled 18.3 18 PDB header:nucleotide binding protein Chain: A: PDB Molecule:putative atp/gtp binding protein; PDBTitle: crystal structure of n-terminal domain of putative atp/gtp binding2 protein from clostridium difficile 630 51 d1adta2 not modelled 17.2 24 Fold:Zn-binding domains of ADDBP Superfamily:Zn-binding domains of ADDBP Family:Zn-binding domains of ADDBP 52 c3c0fB_ not modelled 14.3 32 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein af_1514; PDBTitle: crystal structure of a novel non-pfam protein af1514 from archeoglobus2 fulgidus dsm 4304 solved by s-sad using a cr x-ray source 53 d1k25a4 not modelled 13.7 23 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 54 c3u1nC_ not modelled 13.3 23 PDB header:hydrolase Chain: C: PDB Molecule:sam domain and hd domain-containing protein 1; PDBTitle: structure of the catalytic core of human samhd1 55 d1t3ka_ not modelled 12.2 33 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Cell cycle control phosphatase, catalytic domain 56 c3fkaD_ not modelled 12.0 25 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized ntf-2 like protein; PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution 57 c2c99A_ not modelled 11.7 21 PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf 58 d1kyfa2 not modelled 11.7 26 Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Clathrin adaptor appendage, alpha and beta chain-specific domain 59 d1jqna_ not modelled 11.7 21 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 60 c1xnjB_ not modelled 11.4 24 PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate PDBTitle: aps complex of human paps synthetase 1 61 d2aq2b1 not modelled 11.4 28 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 62 d1mhyd_ not modelled 11.0 18 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 63 d1p5dx4 not modelled 10.9 18 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 64 c2jx8A_ not modelled 10.7 38 PDB header:transcription Chain: A: PDB Molecule:phosphorylated ctd-interacting factor 1; PDBTitle: solution structure of hpcif1 ww domain 65 d1whqa_ not modelled 10.4 28 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 66 c1jqoA_ not modelled 10.2 18 PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize 67 d1jqoa_ not modelled 10.2 18 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 68 c2r44A_ not modelled 10.1 21 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative atpase (chu_0153) from cytophaga2 hutchinsonii atcc 33406 at 2.00 a resolution 69 c3nfiB_ not modelled 10.0 14 PDB header:dna binding protein, transcription Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa49; PDBTitle: crystal structure of tandem winged helix domain of rna polymerase i2 subunit a49 70 c2givA_ not modelled 10.0 26 PDB header:transferase Chain: A: PDB Molecule:probable histone acetyltransferase myst1; PDBTitle: human myst histone acetyltransferase 1 71 d2giva1 not modelled 10.0 26 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 72 c3dukD_ not modelled 9.7 25 PDB header:unknown function Chain: D: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution 73 d1qvra2 not modelled 9.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 74 c3hfkB_ not modelled 9.7 8 PDB header:isomerase Chain: B: PDB Molecule:4-methylmuconolactone methylisomerase; PDBTitle: crystal structure of 4-methylmuconolactone methylisomerase2 (h52a) in complex with 4-methylmuconolactone 75 c3nhvE_ not modelled 9.6 21 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:bh2092 protein; PDBTitle: crystal structure of bh2092 protein from bacillus halodurans,2 northeast structural genomics consortium target bhr228f 76 c3iukB_ not modelled 9.3 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases 77 c2jofA_ not modelled 9.1 60 PDB header:de novo protein Chain: A: PDB Molecule:trp-cage; PDBTitle: the trp-cage: optimizing the stability of a globular2 miniprotein 78 d1g8fa3 not modelled 9.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 79 c2q14A_ not modelled 9.0 23 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase; PDBTitle: crystal structure of phosphohydrolase (bt4208) from bacteroides2 thetaiotaomicron vpi-5482 at 2.20 a resolution 80 c3f7sA_ not modelled 8.7 5 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution 81 d1fw8a_ not modelled 8.5 29 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 82 d1k82a2 not modelled 8.4 17 Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins 83 c1wx4B_ not modelled 8.3 18 PDB header:oxidoreductase/metal transport Chain: B: PDB Molecule:melc; PDBTitle: crystal structure of the oxy-form of the copper-bound streptomyces2 castaneoglobisporus tyrosinase complexed with a caddie protein3 prepared by the addition of dithiothreitol 84 c2g7rA_ not modelled 8.3 36 PDB header:hydrolase Chain: A: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation PDBTitle: x-ray structure of the death domain of the human mucosa associated2 lymphoid tissue lymphoma translocation protein 1 85 c2ee7A_ not modelled 8.2 20 PDB header:structural protein Chain: A: PDB Molecule:sperm flagellar protein 1; PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1 86 d1fnua1 not modelled 8.1 22 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 87 c1c4gB_ not modelled 8.0 32 PDB header:transferase Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate PDBTitle: phosphoglucomutase vanadate based transition state analog2 complex 88 c2wuqA_ not modelled 7.8 16 PDB header:transcription Chain: A: PDB Molecule:beta-lactamase regulatory protein blab; PDBTitle: crystal structure of blab protein from streptomyces cacaoi 89 d1yt8a4 not modelled 7.8 16 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 90 d2bgca1 not modelled 7.7 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 91 c2bgcA_ not modelled 7.6 16 PDB header:transcription Chain: A: PDB Molecule:prfa; PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes 92 d2cb5a_ not modelled 7.5 27 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like 93 d1yt8a1 not modelled 7.5 36 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 94 d1b24a2 not modelled 7.5 26 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Group I mobile intron endonuclease 95 d1e32a3 not modelled 7.3 19 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 96 d2ux0a1 not modelled 7.3 12 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 97 d2f86b1 not modelled 7.3 15 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 98 c3nbxX_ not modelled 7.2 18 PDB header:hydrolase Chain: X: PDB Molecule:atpase rava; PDBTitle: crystal structure of e. coli rava (regulatory atpase variant a) in2 complex with adp 99 c3emeA_ not modelled 7.1 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:rhodanese-like domain protein; PDBTitle: crystal structure of rhodanese-like domain protein from2 staphylococcus aureus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0