Fold library entry viewer: c1pmdA_

Added to library: Tue Mar 16 13:51:35 2010
Links to external resources

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	G	T	I	Y	D	R	N	G	V	P	I	A	E	D	A	T	S	Y	N	V	Y	A	V	I	D	E	N	Y	K	S	A	T	G	K	I	L	Y	V	E	K	T	Q	F	N	K	V	A	E	V	F	H	K	Y	L	D	M	E	E	S	Y	V	R	E	Q	L	S	Q	P	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S					B											B		S	S				T	T	T			S	S			S	T	T	T								T	T	T	T												S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	K	Q	V	S	F	G	A	K	G	N	G	I	T	Y	A	N	M	M	S	I	K	K	E	L	E	A	A	E	V	K	G	I	D	F	T	T	S	P	N	R	S	Y	P	N	G	Q	F	A	S	S	F	I	G	L	A	Q	L	H	E	N	E	D	G	S	K	S	L	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B						S	S	S	S	S	B		T	T	T	T	T	T					S	S	T	T	S													B		S	S	S	S	S	S	T	T	T	S					B				S	S	S	S			B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	S	G	M	E	S	S	L	N	S	I	L	A	G	T	D	G	I	I	T	Y	E	K	D	R	L	G	N	I	V	P	G	T	E	Q	V	S	Q	R	T	M	D	G	K	D	V	Y	T	T	I	S	S	P	L	Q	S	F	M	E	T	Q	M	D	A	F	Q	E	K	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	G	G	G	S	T	T	S	S					S	T	T	T	T	T	T	T	T	S	T	T				S				T	T													S																				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	K	Y	M	T	A	T	L	V	S	A	K	T	G	E	I	L	A	T	T	Q	R	P	T	F	D	A	D	T	K	E	G	I	T	E	D	F	V	W	R	D	I	L	Y	Q	S	N	Y	E	P	G	S	T	M	K	V	M	M	L	A	A	A	I	D	N	N	T	F	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S		B							S	S				T	T	T	T		S	S	S	S							T	T	T	S							S	T	T												T				S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	E	V	F	N	S	S	E	L	K	I	A	D	A	T	I	R	D	W	D	V	N	E	G	L	T	G	G	R	M	M	T	F	S	Q	G	F	A	H	S	S	N	V	G	M	T	L	L	E	Q	K	M	G	D	A	T	W	L	D	Y	L	N	R	F	K	F	G	V	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						S				T	T	T	S					G	G	G	G	T			S	S						S						T	T						T					T	T		T	T									T	T	T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	R	F	G	L	T	D	E	Y	A	G	Q	L	P	A	D	N	I	V	N	I	A	Q	S	S	F	G	Q	G	I	S	V	T	Q	T	Q	M	I	R	A	F	T	A	I	A	N	D	G	V	M	L	E	P	K	F	I	S	A	I	Y	D	P	N	D	Q	T	A	R	K	S	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S										S									T	T	T	S	S																T	T	T	T						B								S	S	S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	K	E	I	V	G	N	P	V	S	K	D	A	A	S	L	T	R	T	N	M	V	L	V	G	T	D	P	V	Y	G	T	M	Y	N	H	S	T	G	K	P	T	V	T	V	P	G	Q	N	V	A	L	K	S	G	T	A	Q	I	A	D	E	K	N	G	G	Y	L	V	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S														T	T	S	S		S	S	S		S	S			S	S	S	S	S		S	S		B	T	T	B															S	S	S	S	S			S	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	T	D	Y	I	F	S	A	V	S	M	S	P	A	E	N	P	D	F	I	L	Y	V	T	V	Q	Q	P	E	H	Y	S	G	I	Q	L	G	E	F	A	N	P	I	L	E	R	A	S	A	M	K	D	S	L	N	L	Q	T	T	A	K	A	L	E	Q	V	S	Q	Q	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T										S	S	S	S	S		S											S	S																				T	T	T	T	S	T	T	S	S	S	T	T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	Y	P	M	P	S	V	K	D	I	S	P	G	D	L	A	E	E	L	R	R	N	L	V	Q	P	I	V	V	G	T	G	T	K	I	K	N	S	S	A	E	E	G	K	N	L	A	P	N	Q	Q	V	L	I	L	S	D	K	A	E	E	V	P	D	M	Y	G	W	T	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B				S	S	S			T	T	T					G	G	G	S						S		S	S	S				T	T	S				S	S		B			T	T								S				S					S	S			S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
Sequence	T	A	E	T	L	A	K	W	L	N	I	E	L	E	F	Q	G	S	G	S	T	V	Q	K	Q	D	V	R	A	N	T	A	I	K	D	I	K	K	I	T	L	T	L	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	S	S				B						S	S	S					S	S		S				T	T	T				B

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PDB structure

FASTA sequence

Hidden Markov model

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