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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3nfiB_

Fold library idPDB HeaderMoleculeTitle
c3nfiB_PDB header: dna binding protein, transcriptionChain: B: PDB Molecule: dna-directed rna polymerase i subunit rpa49;PDBTitle: crystal structure of tandem winged helix domain of rna polymerase i2 subunit a49


Added to library: Sat Sep 18 08:54:03 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LPTRAQXDEITSNDRPTPLANIDATDVEQIYPIESIIPKKELQFIRVSSILKEADKEKKLELFPYQNNSK
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Known secondary structure (DSSP)
SSS



TT
SSGGGTS
S
TT





TSS


S

 .........80.........90.........100.........110.........120.........130.........140
Sequence YVAKKLDSLTQPSQXTKLQXLYYLSLLLGVYENRRVNNKTKLLERLNSPPEILVDGILSRFTVIKPSKDR
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Known secondary structure (DSSP) TT

SGGGTTT

BTTSS









 .........150.........160.........170.........180.........190.........200.........210
Sequence SYFIDPQNEDKILCYILAIIXHLDNFIVEITPLAHELNLKPSKVVSLFRVLGAIVKGATVAQAEAFGIPK
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Known secondary structure (DSSP) B

TTTT

TT


TT

G
 .........220.......
Sequence STAASYKIATXKVPFKL
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Known secondary structure (DSSP) GGGGGS

SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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