Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33790
DateThu Jan 5 11:52:39 GMT 2012
Unique Job ID65ab397f58c1a679

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3ghgK_
Top template information
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
Confidence and coverage
Confidence: 88.0% Coverage: 12%
110 residues ( 12% of your sequence) have been modelled with 88.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNEVYVIAGGEWLRNNLNAIAAFMGTWTWDSIEKIALTLSVLAVAVMWVQRHNVMDLLGW
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   .........70.........80.........90.........100.........110.........120
Sequence  VAVFVLISLLVNVRTSVQIIDNSDLVKVHRVDNVPVGLAMPLSLTTRIGHAMVASYEMIF
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   .........130.........140.........150.........160.........170.........180
Sequence  TQPDSVTYSKTGMLFGANLIVKSTDFLSRNPEIINLFQDYVQNCVLGDIYLNHKYTLEDL
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   .........190.........200.........210.........220.........230.........240
Sequence  MASADPYTLIFSRPSPLRGVYDNNNNFITCKDASVTLKDRLNLDTKTGGKTWHYYVQQIF
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   .........250.........260.........270.........280.........290.........300
Sequence  GGRPDPDLLFRQLVSDSYSYFYGSSQSASQIMRQNVTMNALKEGITSNAARNGDTASLVS
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   .........310.........320.........330.........340.........350.........360
Sequence  LATTSSMEKQRLAHVSIGHVTMRNLPMVQTILTGIAIGIFPLLILAAVFNKLTLSVLKGY
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   .........370.........380.........390.........400.........410.........420
Sequence  VFALMWLQTWPLLYAILNSAMTFYAKQNGAPVVLSELSQIQLKYSNLASTAGYLSAMIPP
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   .........430.........440.........450.........460.........470.........480
Sequence  LSWMMVKGLGAGFSSVYSHFASSSISPTASAAGSVVDGNYSYGNMQTENVNGFSWSTNST
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   .........490.........500.........510.........520.........530.........540
Sequence  TSFGQMMYQTGSGATATQTRDGNMVMDASGAMSRLPVGINATRQIAAAQQEMAREASNRA
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   .........550.........560.........570.........580.........590.........600
Sequence  ESALHGFSSSIASAWNTLSQFGSNRGSSDSVTGGADSTMSAQDSMMASRMRSAVESYAKA
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   .........610.........620.........630.........640.........650.........660
Sequence  HNISNEQATRELASRSTNASLGLYGDAYAKGHLGISVLGNGGGVGLQAGAKASIDGSDLD
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   .........670.........680.........690.........700.........710.........720
Sequence  SHEASSGSRASHDARHDIDARATQDFKEASDYFTSRKVSESGSHTDNNADSRVDQLSAAL
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   .........730.........740.........750.........760.........770.........780
Sequence  NSAKQSYDQYTTNMTRSHEYAEMASRTESMSGQMSEDLSQQFAQYVMKNAPQDVEAILTN
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   .........790.........800.........810.........820.........830.........840
Sequence  TSSPEIAERRRAMAWSFVQEQVQPGVDNTWRESRRDIGKGMESVPSGGGSQDIIADHQGH
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   .........850.........860.........870.........880.........890.........900
Sequence  QAIIEQRTQDSNIRNDVKHQVDNMVTEYRGNIGDTQNSIRGEENIVKGQYSELQNHHKTE
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   .........910.........920.........930........
Sequence  ALTQNNKYNEEKLAQERIPGADSPKELLEKAKSYQHKE
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Disorder  ??

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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3ghg chain K

3D model

Region: 828 - 937
Aligned: 110
Modelled: 110
Confidence: 88.0%
Identity: 11%
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen

Phyre2

PDB 1ei3 chain E

3D model

Region: 821 - 938
Aligned: 118
Modelled: 118
Confidence: 85.0%
Identity: 6%
PDB header:
PDB COMPND:

Phyre2

PDB 3oja chain B

3D model

Region: 796 - 938
Aligned: 143
Modelled: 143
Confidence: 83.3%
Identity: 8%
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2

PDB 1deq chain O

3D model

Region: 828 - 937
Aligned: 110
Modelled: 110
Confidence: 82.7%
Identity: 14%
PDB header:
PDB COMPND:

Phyre2

PDB 1deq chain F

3D model

Region: 811 - 920
Aligned: 110
Modelled: 110
Confidence: 80.7%
Identity: 6%
PDB header:
PDB COMPND:

Phyre2

PDB 3cwg chain A

3D model

Region: 774 - 930
Aligned: 157
Modelled: 157
Confidence: 74.9%
Identity: 6%
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment

Phyre2

PDB 1ei3 chain C

3D model

Region: 821 - 930
Aligned: 110
Modelled: 110
Confidence: 72.1%
Identity: 6%
PDB header:
PDB COMPND:

Phyre2

PDB 1bf5 chain A

3D model

Region: 725 - 889
Aligned: 165
Modelled: 165
Confidence: 59.3%
Identity: 4%
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: tyrosine phosphorylated stat-1/dna complex

Phyre2

PDB 2kr6 chain A

3D model

Region: 12 - 73
Aligned: 62
Modelled: 62
Confidence: 49.2%
Identity: 10%
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit

Phyre2

PDB 2a5y chain A

3D model

Region: 6 - 65
Aligned: 58
Modelled: 60
Confidence: 47.1%
Identity: 12%
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator ced-9;
PDBTitle: structure of a ced-4/ced-9 complex

Phyre2

PDB 1bg1 chain A

3D model

Region: 711 - 883
Aligned: 173
Modelled: 173
Confidence: 38.5%
Identity: 5%
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex

Phyre2

PDB 1f5n chain A

3D model

Region: 668 - 937
Aligned: 270
Modelled: 270
Confidence: 27.9%
Identity: 9%
PDB header:signaling protein
Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1;
PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.

Phyre2

PDB 1cii chain A

3D model

Region: 482 - 930
Aligned: 443
Modelled: 449
Confidence: 27.5%
Identity: 8%
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia

Phyre2

PDB 2k8j chain X

3D model

Region: 336 - 351
Aligned: 16
Modelled: 16
Confidence: 27.0%
Identity: 31%
PDB header:viral protein
Chain: X: PDB Molecule:p7tm2;
PDBTitle: solution structure of hcv p7 tm2

Phyre2

PDB 1ji6 chain A domain 3

3D model

Region: 334 - 371
Aligned: 37
Modelled: 38
Confidence: 23.6%
Identity: 16%
Fold: Toxins' membrane translocation domains
Superfamily: delta-Endotoxin (insectocide), N-terminal domain
Family: delta-Endotoxin (insectocide), N-terminal domain

Phyre2

PDB 1b9u chain A

3D model

Region: 361 - 377
Aligned: 17
Modelled: 17
Confidence: 19.7%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:protein (atp synthase);
PDBTitle: membrane domain of the subunit b of the e.coli atp synthase

Phyre2

PDB 1r3j chain C

3D model

Region: 29 - 118
Aligned: 90
Modelled: 90
Confidence: 17.4%
Identity: 6%
Fold: Voltage-gated potassium channels
Superfamily: Voltage-gated potassium channels
Family: Voltage-gated potassium channels

Phyre2

PDB 1mhs chain A

3D model

Region: 330 - 377
Aligned: 48
Modelled: 48
Confidence: 16.8%
Identity: 10%
PDB header:membrane protein, proton transport
Chain: A: PDB Molecule:plasma membrane atpase;
PDBTitle: model of neurospora crassa proton atpase

Phyre2

PDB 1o0l chain A

3D model

Region: 11 - 69
Aligned: 57
Modelled: 59
Confidence: 16.5%
Identity: 9%
Fold: Toxins' membrane translocation domains
Superfamily: Bcl-2 inhibitors of programmed cell death
Family: Bcl-2 inhibitors of programmed cell death

Phyre2

PDB 3dtp chain A

3D model

Region: 818 - 932
Aligned: 115
Modelled: 115
Confidence: 15.2%
Identity: 6%
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map

Phyre2
1

c3ghgK_
2

c1ei3E_
3

c3ojaB_
4

c1deqO_
5

c1deqF_
6

c3cwgA_
7

c1ei3C_
8

c1bf5A_
9

c2kr6A_
10

c2a5yA_
11

c1bg1A_
12

c1f5nA_
13

c1ciiA_
14

c2k8jX_
15

d1ji6a3
16

c1b9uA_
17

d1r3jc_
18

c1mhsA_
19

d1o0la_
20

c3dtpA_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ghgK_



88.0 11 PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
2c1ei3E_



85.0 6 PDB header:
PDB COMPND:
3c3ojaB_



83.3 8 PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
4c1deqO_



82.7 14 PDB header:
PDB COMPND:
5c1deqF_



80.7 6 PDB header:
PDB COMPND:
6c3cwgA_



74.9 6 PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
7c1ei3C_



72.1 6 PDB header:
PDB COMPND:
8c1bf5A_



59.3 4 PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: tyrosine phosphorylated stat-1/dna complex
9c2kr6A_



49.2 10 PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
10c2a5yA_



47.1 12 PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator ced-9;
PDBTitle: structure of a ced-4/ced-9 complex
11c1bg1A_



38.5 5 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
12c1f5nA_



27.9 9 PDB header:signaling protein
Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1;
PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
13c1ciiA_



27.5 8 PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
14c2k8jX_



27.0 31 PDB header:viral protein
Chain: X: PDB Molecule:p7tm2;
PDBTitle: solution structure of hcv p7 tm2
15d1ji6a3



23.6 16 Fold:Toxins' membrane translocation domains
Superfamily:delta-Endotoxin (insectocide), N-terminal domain
Family:delta-Endotoxin (insectocide), N-terminal domain
16c1b9uA_



19.7 24 PDB header:hydrolase
Chain: A: PDB Molecule:protein (atp synthase);
PDBTitle: membrane domain of the subunit b of the e.coli atp synthase
17d1r3jc_



17.4 6 Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
18c1mhsA_



16.8 10 PDB header:membrane protein, proton transport
Chain: A: PDB Molecule:plasma membrane atpase;
PDBTitle: model of neurospora crassa proton atpase
19d1o0la_



16.5 9 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
20c3dtpA_



15.2 6 PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map
21c1yvlB_



not modelled 14.4 6 PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
22d2r6gf1



not modelled 13.8 15 Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
23c1g8xB_



not modelled 13.7 6 PDB header:structural protein
Chain: B: PDB Molecule:myosin ii heavy chain fused to alpha-actinin 3;
PDBTitle: structure of a genetically engineered molecular motor
24c2xa0A_



not modelled 13.7 11 PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide
25c2eceA_



not modelled 13.4 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:462aa long hypothetical selenium-binding protein;
PDBTitle: x-ray structure of hypothetical selenium-binding protein2 from sulfolobus tokodaii, st0059
26c2wpqA_



not modelled 12.8 7 PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion)
27c2ki9A_



not modelled 12.7 30 PDB header:membrane protein
Chain: A: PDB Molecule:cannabinoid receptor 2;
PDBTitle: human cannabinoid receptor-2 helix 6
28d2i5nl1



not modelled 12.0 11 Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
29c3ifxB_



not modelled 10.9 9 PDB header:membrane protein
Chain: B: PDB Molecule:voltage-gated potassium channel;
PDBTitle: crystal structure of the spin-labeled kcsa mutant v48r1
30c2yv6A_



not modelled 10.7 20 PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2 homologous antagonist/killer;
PDBTitle: crystal structure of human bcl-2 family protein bak
31c1ma1E_



not modelled 10.4 19 PDB header:oxidoreductase
Chain: E: PDB Molecule:superoxide dismutase;
PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum
32c2rddB_



not modelled 10.4 30 PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
33c2nybC_



not modelled 9.8 10 PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase [fe];
PDBTitle: crystal structure of e.coli iron superoxide dismutase q69e2 at 1.1 angstrom resolution
34d1rh1a2



not modelled 9.7 16 Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
35d1vbga3



not modelled 9.7 6 Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:Pyruvate phosphate dikinase, N-terminal domain
36c1y67D_



not modelled 9.5 10 PDB header:oxidoreductase
Chain: D: PDB Molecule:manganese superoxide dismutase;
PDBTitle: crystal structure of manganese superoxide dismutase from2 deinococcus radiodurans
37c1kkcB_



not modelled 9.4 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:manganese superoxide dismutase;
PDBTitle: crystal structure of aspergillus fumigatus mnsod
38d1y9ia_



not modelled 9.3 9 Fold:YutG-like
Superfamily:YutG-like
Family:YutG-like
39c3k07A_



not modelled 9.3 8 PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
40c1jchC_



not modelled 9.2 8 PDB header:ribosome inhibitor, hydrolase
Chain: C: PDB Molecule:colicin e3;
PDBTitle: crystal structure of colicin e3 in complex with its immunity protein
41c2o2fA_



not modelled 9.2 11 PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand
42d1uerc2



not modelled 9.1 14 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
43c1avmA_



not modelled 9.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide
44d1wb8a2



not modelled 8.9 14 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
45d1bm8a_



not modelled 8.9 8 Fold:DNA-binding domain of Mlu1-box binding protein MBP1
Superfamily:DNA-binding domain of Mlu1-box binding protein MBP1
Family:DNA-binding domain of Mlu1-box binding protein MBP1
46c3js4C_



not modelled 8.8 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum
47d1zy3a1



not modelled 8.8 9 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
48c2cw2B_



not modelled 8.7 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase 1;
PDBTitle: crystal structure of superoxide dismutase from p. marinus
49c1qnnD_



not modelled 8.6 14 PDB header:oxidoreductase
Chain: D: PDB Molecule:superoxide dismutase;
PDBTitle: cambialistic superoxide dismutase from porphyromonas2 gingivalis
50c3rg9A_



not modelled 8.5 33 PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate synthase;
PDBTitle: trypanosoma brucei dihydrofolate reductase (tbdhfr) in complex with2 wr99210
51d2q7ra1



not modelled 8.4 10 Fold:MAPEG domain-like
Superfamily:MAPEG domain-like
Family:MAPEG domain
52c1n0nB_



not modelled 8.2 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase [mn];
PDBTitle: catalytic and structural effects of amino-acid substitution at his302 in human manganese superoxide dismutase
53c3lj9A_



not modelled 8.2 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron superoxide dismutase;
PDBTitle: x-ray structure of the iron superoxide dismutase from2 pseudoalteromonas haloplanktis in complex with sodium azide
54c2gpcB_



not modelled 8.1 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:iron superoxide dismutase;
PDBTitle: the crystal structure of the enzyme fe-superoxide dismutase2 from trypanosoma cruzi
55c3l9oA_



not modelled 8.0 8 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
56c3ceiA_



not modelled 8.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori
57c3kdpG_



not modelled 7.9 12 PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
58c3kdpH_



not modelled 7.9 12 PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
59c3tqjB_



not modelled 7.9 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase [fe];
PDBTitle: structure of the superoxide dismutase (fe) (sodb) from coxiella2 burnetii
60c2a03A_



not modelled 7.8 5 PDB header:oxidoreductase
Chain: A: PDB Molecule:fe-superoxide dismutase homolog;
PDBTitle: superoxide dismutase protein from plasmodium berghei
61c3nnqA_



not modelled 7.8 3 PDB header:viral protein
Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus
PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3
62c1p7gL_



not modelled 7.7 14 PDB header:oxidoreductase
Chain: L: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum
63d1ma1a2



not modelled 7.6 19 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
64c1gv3B_



not modelled 7.6 14 PDB header:manganese superoxide dismutase
Chain: B: PDB Molecule:manganese superoxide dismutase;
PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase
65d1y67a2



not modelled 7.5 10 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
66d1b06a2



not modelled 7.5 10 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
67c2rcvA_



not modelled 7.5 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [mn];
PDBTitle: crystal structure of the bacillus subtilis superoxide2 dismutase
68c2kncB_



not modelled 7.5 26 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
69c2y6xA_



not modelled 7.5 13 PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii 11 kd protein;
PDBTitle: structure of psb27 from thermosynechococcus elongatus
70c1unfX_



not modelled 7.5 24 PDB header:oxidoreductase
Chain: X: PDB Molecule:iron superoxide dismutase;
PDBTitle: the crystal structure of the eukaryotic fesod from vigna2 unguiculata suggests a new enzymatic mechanism
71d1bxla_



not modelled 7.4 9 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
72c3prqT_



not modelled 7.3 18 PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
73c3bz1T_



not modelled 7.3 18 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer
74c3bz2T_



not modelled 7.3 18 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer
75c3prrT_



not modelled 7.3 18 PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
76c3a0bT_



not modelled 7.3 15 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
77c3arct_



not modelled 7.3 15 PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
78c1dt0A_



not modelled 7.3 5 PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: cloning, sequence, and crystallographic structure of2 recombinant iron superoxide dismutase from pseudomonas3 ovalis
79c1en4C_



not modelled 7.3 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:manganese superoxide dismutase;
PDBTitle: crystal structure analysis of the e. coli manganese2 superoxide dismutase q146h mutant
80c1gn4B_



not modelled 7.3 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase.
81c1s5lT_



not modelled 7.2 18 PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii psbt protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
82c1s5lt_



not modelled 7.2 18 PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii psbt protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
83c2cw3A_



not modelled 7.2 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron superoxide dismutase;
PDBTitle: x-ray structure of pmsod2, superoxide dismutase from2 perkinsus marinus
84c1sseB_



not modelled 7.2 11 PDB header:transcription activator
Chain: B: PDB Molecule:ap-1 like transcription factor yap1;
PDBTitle: solution structure of the oxidized form of the yap1 redox2 domain
85d1uera2



not modelled 7.2 14 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
86d2axtt1



not modelled 7.2 18 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein T, PsbT
Family:PsbT-like
87c3a0bt_



not modelled 7.2 18 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
88c2axtT_



not modelled 7.2 18 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
89c2axtt_



not modelled 7.2 18 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
90c3arcT_



not modelled 7.2 18 PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
91c3a0ht_



not modelled 7.2 18 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex
92c3kziT_



not modelled 7.2 18 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
93c3a0hT_



not modelled 7.2 18 PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex
94d1p7ga2



not modelled 7.1 14 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
95d1juva_



not modelled 7.1 40 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
96d1pq1a_



not modelled 7.0 9 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
97c2i88A_



not modelled 7.0 14 PDB header:membrane protein
Chain: A: PDB Molecule:colicin-e1;
PDBTitle: crystal structure of the channel-forming domain of colicin2 e1
98d1kkca2



not modelled 6.9 10 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
99c3h1sB_



not modelled 6.9 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0