PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1y67D_

Fold library id	PDB Header	Molecule	Title
c1y67D_	PDB header: oxidoreductase	Chain: D: PDB Molecule: manganese superoxide dismutase;	PDBTitle: crystal structure of manganese superoxide dismutase from2 deinococcus radiodurans

Links to external resources
Added to library: Tue Mar 16 12:46:27 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A Y T L P Q L P Y A Y D A L E P H I D A R T M E I H H T K H H Q T Y V D N A N K A L E G T E F A D L P V E Q L I Q Q L D R V P A D K K G A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T T T T S
T T T S T T T T S
T T
T T T S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R N N A G G H A N H S M F W Q I M G Q G Q G Q N G A N Q P S G E L L D A I N S A F G S F D A F K Q K F E D A A K T R F G S G W A W L V V K D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T B
S S
B T T B
S S
S S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G K L D V V S T A N Q D N P L M G E A I A G V S G T P I L G V D V W E H A Y Y L N Y Q N R R P D Y L A A F W N V V N W D E V S K R Y A A A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
G G G
S S
S
S G G G T T T
G G G B
T

. . . .

Sequence L V P R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	Y	T	L	P	Q	L	P	Y	A	Y	D	A	L	E	P	H	I	D	A	R	T	M	E	I	H	H	T	K	H	H	Q	T	Y	V	D	N	A	N	K	A	L	E	G	T	E	F	A	D	L	P	V	E	Q	L	I	Q	Q	L	D	R	V	P	A	D	K	K	G	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S		T	T	T	T	T	T	T	S											T														T	T	S	T	T	T	T	S						T	T		T	T	T	S		G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	N	N	A	G	G	H	A	N	H	S	M	F	W	Q	I	M	G	Q	G	Q	G	Q	N	G	A	N	Q	P	S	G	E	L	L	D	A	I	N	S	A	F	G	S	F	D	A	F	K	Q	K	F	E	D	A	A	K	T	R	F	G	S	G	W	A	W	L	V	V	K	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	B		S	S			B	T	T	B																S	S																	S	S									T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	K	L	D	V	V	S	T	A	N	Q	D	N	P	L	M	G	E	A	I	A	G	V	S	G	T	P	I	L	G	V	D	V	W	E	H	A	Y	Y	L	N	Y	Q	N	R	R	P	D	Y	L	A	A	F	W	N	V	V	N	W	D	E	V	S	K	R	Y	A	A	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T									T	T			G	G	G						S	S		S									S	G	G	G	T					T	T										G	G	G	B													T
	.	.	.	.
Sequence	L	V	P	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S