Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	Q	G	E	Y	P	E	D	N	R	V	G	K	H	E	P	H	D	L	S	L	T	R	R	D	L	I	K	V	S	A	A	T	A	A	T	A	V	V	Y	P	H	S	T	L	A	A	S	V	P	A	A	T	P	A	P	E	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	P	L	T	L	K	V	N	G	K	T	E	Q	L	E	V	D	T	R	T	T	L	L	D	T	L	R	E	N	L	H	L	I	G	T	K	K	G	C	D	H	G	Q	C	G	A	C	T	V	L	V	N	G	R	R	L	N	A	C	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	L	A	V	M	H	Q	G	A	E	I	T	T	I	E	G	L	G	S	P	D	N	L	H	P	M	Q	A	A	F	I	K	H	D	G	F	Q	C	G	Y	C	T	S	G	Q	I	C	S	S	V	A	V	L	K	E	I	Q	D	G	I
Secondary structure
SS confidence
Disorder																																																											?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence		P	S	H	V	T	V	D	L	V	S	A	P	E	T	T	A	D	E	I	R	E	R	M	S	G	N	I	C	R	C	G	A	Y	A	N	I	L	A	A	I	E	D	A	A	G	E	I	K	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?		?																																			?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vlb chain A Region: 61 - 228 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 42% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a Phyre2 PDB 1ffu chain A Region: 61 - 228 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 43% PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor Phyre2 PDB 3hrd chain H Region: 59 - 228 Aligned: 155 Modelled: 155 Confidence: 100.0% Identity: 37% PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase Phyre2 PDB 1dgj chain A Region: 63 - 228 Aligned: 151 Modelled: 151 Confidence: 100.0% Identity: 42% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774 Phyre2 PDB 1t3q chain D Region: 61 - 228 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 43% PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 Phyre2 PDB 1wyg chain A Region: 63 - 224 Aligned: 147 Modelled: 147 Confidence: 100.0% Identity: 43% PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) Phyre2 PDB 1rm6 chain F Region: 61 - 229 Aligned: 154 Modelled: 154 Confidence: 100.0% Identity: 44% PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica Phyre2 PDB 1n60 chain D Region: 61 - 228 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 44% PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form Phyre2 PDB 3b9j chain I Region: 60 - 224 Aligned: 150 Modelled: 150 Confidence: 100.0% Identity: 42% PDB header:oxidoreductase Chain: I: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine Phyre2 PDB 3eub chain J Region: 62 - 224 Aligned: 148 Modelled: 148 Confidence: 100.0% Identity: 43% PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine Phyre2 PDB 2w3r chain G Region: 61 - 226 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 44% PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine Phyre2 PDB 1ffv chain A domain 1 Region: 139 - 228 Aligned: 75 Modelled: 75 Confidence: 100.0% Identity: 41% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1n62 chain A domain 1 Region: 138 - 228 Aligned: 76 Modelled: 76 Confidence: 100.0% Identity: 43% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1zxi chain A domain 1 Region: 141 - 227 Aligned: 72 Modelled: 72 Confidence: 100.0% Identity: 46% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1dgj chain A domain 1 Region: 139 - 229 Aligned: 76 Modelled: 76 Confidence: 100.0% Identity: 41% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1t3q chain A domain 1 Region: 139 - 228 Aligned: 75 Modelled: 75 Confidence: 100.0% Identity: 40% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1rm6 chain C domain 1 Region: 140 - 229 Aligned: 75 Modelled: 75 Confidence: 100.0% Identity: 40% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1vlb chain A domain 1 Region: 139 - 229 Aligned: 76 Modelled: 76 Confidence: 100.0% Identity: 38% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1v97 chain A domain 1 Region: 138 - 224 Aligned: 72 Modelled: 72 Confidence: 100.0% Identity: 39% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1jro chain A domain 1 Region: 140 - 229 Aligned: 71 Modelled: 71 Confidence: 100.0% Identity: 45% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 2pia chain A Region: 47 - 111 Aligned: 63 Modelled: 63 Confidence: 97.2% Identity: 22% PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] Phyre2 PDB 1p84 chain E Region: 7 - 99 Aligned: 93 Modelled: 93 Confidence: 77.1% Identity: 17% PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex Phyre2 1 c1vlbA_ 2 c1ffuA_ 3 c3hrdH_ 4 c1dgjA_ 5 c1t3qD_ 6 c1wygA_ 7 c1rm6F_ 8 c1n60D_ 9 c3b9jI_ 10 c3eubJ_ 11 c2w3rG_ 12 d1ffva1 13 d1n62a1 14 d1zxia1 15 d1dgja1 16 d1t3qa1 17 d1rm6c1 18 d1vlba1 19 d1v97a1 20 d1jroa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 c2piaA_ 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 c1p84E_ 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1vlbA_ 100.0 42 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a 2 c1ffuA_ 100.0 43 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 3 c3hrdH_ 100.0 37 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 4 c1dgjA_ 100.0 42 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774 5 c1t3qD_ 100.0 43 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 6 c1wygA_ 100.0 43 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 7 c1rm6F_ 100.0 44 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 8 c1n60D_ 100.0 44 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 9 c3b9jI_ 100.0 42 PDB header:oxidoreductase Chain: I: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 10 c3eubJ_ 100.0 43 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 11 c2w3rG_ 100.0 44 PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine 12 d1ffva1 100.0 41 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 13 d1n62a1 100.0 43 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 14 d1zxia1 100.0 46 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 15 d1dgja1 100.0 41 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 16 d1t3qa1 100.0 40 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 17 d1rm6c1 100.0 40 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 18 d1vlba1 100.0 38 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 19 d1v97a1 100.0 39 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 20 d1jroa1 100.0 45 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 21 d1v97a2 not modelled 100.0 44 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 22 d1jroa2 not modelled 100.0 42 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 23 d1t3qa2 not modelled 100.0 46 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 24 d1n62a2 not modelled 100.0 41 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 25 d1ffva2 not modelled 100.0 45 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 26 d1rm6c2 not modelled 100.0 46 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 27 d1vlba2 not modelled 99.9 46 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 28 d1dgja2 not modelled 99.9 43 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 29 d2bs2b2 not modelled 99.4 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 30 d1nekb2 not modelled 99.2 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 31 d1kf6b2 not modelled 99.2 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 32 d3c8ya2 not modelled 99.1 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 33 c2b76N_ not modelled 98.6 25 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 34 d2fug33 not modelled 98.5 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 35 c2bs2E_ not modelled 98.5 26 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 36 c1c4cA_ not modelled 98.5 30 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 37 c2h89B_ not modelled 98.5 23 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 38 c1nekB_ not modelled 98.2 32 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 39 d1frra_ not modelled 97.8 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 40 d1fxia_ not modelled 97.8 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 41 d1wria_ not modelled 97.7 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 42 d1awda_ not modelled 97.7 31 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 43 d1iuea_ not modelled 97.6 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 44 d1a70a_ not modelled 97.6 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 45 c2fugC_ not modelled 97.5 20 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 46 d1l5pa_ not modelled 97.5 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 47 d2piaa3 not modelled 97.4 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 48 d2cjoa_ not modelled 97.3 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 49 d1czpa_ not modelled 97.3 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 50 c1krhA_ not modelled 97.3 22 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 51 d1offa_ not modelled 97.2 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 52 c2piaA_ 97.2 22 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 53 d1jq4a_ not modelled 97.1 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 54 d1frda_ not modelled 97.1 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 55 d1gaqb_ not modelled 97.1 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 56 d1krha3 not modelled 97.0 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 57 d1pfda_ not modelled 97.0 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 58 c3huiA_ not modelled 97.0 25 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris 59 c2wlbB_ not modelled 97.0 22 PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria 60 c3ah7A_ not modelled 97.0 24 PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004 61 d4fxca_ not modelled 96.9 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 62 c3lxfC_ not modelled 96.8 20 PDB header:metal binding protein Chain: C: PDB Molecule:ferredoxin; PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans 63 d1e9ma_ not modelled 96.7 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 64 d1xlqa1 not modelled 96.5 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 65 d2bt6a1 not modelled 96.4 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 66 d1doia_ not modelled 96.4 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 67 d1b9ra_ not modelled 96.1 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 68 c1x31A_ not modelled 96.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 69 d1i7ha_ not modelled 95.8 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 70 d1e0za_ not modelled 95.5 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 71 c1y56A_ not modelled 93.2 25 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1363; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii 72 c1l6vA_ not modelled 92.6 19 PDB header:electron transport Chain: A: PDB Molecule:adrenodoxin 1; PDBTitle: structure of reduced bovine adrenodoxin 73 d1ep3b2 not modelled 86.9 21 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Dihydroorotate dehydrogenase B, PyrK subunit 74 c2kl0A_ not modelled 78.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 75 c1p84E_ 77.1 17 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 76 c2kd0A_ not modelled 76.4 30 PDB header:signaling protein Chain: A: PDB Molecule:lrr repeats and ubiquitin-like domain-containing PDBTitle: nmr solution structure of o64736 protein from arabidopsis2 thaliana. northeast structural genomics consortium mega3 target ar3445a 77 c1ep3B_ not modelled 75.5 30 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. 78 c3cwiA_ not modelled 73.0 22 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 79 d1v86a_ not modelled 65.6 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 80 d1oqya4 not modelled 61.1 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 81 d1wh3a_ not modelled 60.8 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 82 d1zud21 not modelled 59.3 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 83 d1v5oa_ not modelled 58.6 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 84 c2dziA_ not modelled 58.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin-like protein 4a; PDBTitle: 2dzi/solution structure of the n-terminal ubiquitin-like2 domain in human ubiquitin-like protein 4a (gdx) 85 c2kk8A_ not modelled 53.5 41 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at4g05270; PDBTitle: nmr solution structure of a putative uncharacterized protein2 obtained from arabidopsis thaliana: northeast structural3 genomics consortium target ar3449a 86 d2al3a1 not modelled 53.3 31 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 87 d1wiaa_ not modelled 52.5 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 88 d1p1aa_ not modelled 49.9 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 89 d1uela_ not modelled 49.8 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 90 c1tygG_ not modelled 49.7 26 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 91 d1v2ya_ not modelled 48.6 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 92 d2znvb1 not modelled 41.4 36 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 93 d1bt0a_ not modelled 40.2 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 94 d2cu3a1 not modelled 39.8 38 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 95 c2kanA_ not modelled 39.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ar3433a; PDBTitle: solution nmr structure of ubiquitin-like domain of2 arabidopsis thaliana protein at2g32350. northeast3 structural genomics consortium target ar3433a 96 c2klcA_ not modelled 38.8 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr solution structure of human ubiquitin-like domain of2 ubiquilin 1, northeast structural genomics consortium3 (nesg) target ht5a 97 c3itcA_ not modelled 37.3 18 PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol 98 c3cvoA_ not modelled 36.8 16 PDB header:transferase Chain: A: PDB Molecule:methyltransferase-like protein of unknown function; PDBTitle: crystal structure of a methyltransferase-like protein (spo2022) from2 silicibacter pomeroyi dss-3 at 1.80 a resolution 99 d1dusa_ not modelled 36.7 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical protein MJ0882 100 d1tygb_ not modelled 36.3 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 101 c3kdvB_ not modelled 35.8 27 PDB header:dna binding protein Chain: B: PDB Molecule:dna damage response b protein; PDBTitle: crystal structure of dna damage response b (ddrb) from deinococcus2 geothermalis 102 d1itua_ not modelled 35.3 18 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Renal dipeptidase 103 c2e76D_ not modelled 34.6 25 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 104 d1j8ca_ not modelled 34.5 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 105 d1erda_ not modelled 34.5 19 Fold:Protozoan pheromone-like Superfamily:Protozoan pheromone proteins Family:Protozoan pheromone proteins 106 d1wx7a1 not modelled 34.0 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 107 c1qzeA_ not modelled 32.6 19 PDB header:replication Chain: A: PDB Molecule:uv excision repair protein rad23 homolog a; PDBTitle: hhr23a protein structure based on residual dipolar coupling2 data 108 c2nnzA_ not modelled 32.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: solution structure of the hypothetical protein af2241 from2 archaeoglobus fulgidus 109 d1ndda_ not modelled 32.2 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 110 c2pq4B_ not modelled 31.3 30 PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide 111 c3kbgA_ not modelled 31.3 31 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 112 c2jv8A_ not modelled 30.6 34 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ne1242; PDBTitle: solution structure of protein ne1242 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net4 113 c2fynO_ not modelled 30.6 31 PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 114 d1v7wa1 not modelled 29.8 17 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glycosyltransferase family 36 C-terminal domain 115 d1sifa_ not modelled 29.6 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 116 c1yx5B_ not modelled 28.5 29 PDB header:hydrolase Chain: B: PDB Molecule:ubiquitin; PDBTitle: solution structure of s5a uim-1/ubiquitin complex 117 d1wx9a1 not modelled 28.1 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 118 c2ojrA_ not modelled 27.9 31 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin; PDBTitle: structure of ubiquitin solved by sad using the lanthanide-2 binding tag 119 d1iyfa_ not modelled 27.0 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 120 c2fyuE_ not modelled 24.7 21 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0