Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	Q	I	V	G	A	L	I	L	L	I	A	G	F	A	I	L	R	L	L	F	R	A	L	I	S	T	A	S	A	L	A	G	L	I	L	L	C	L	F	G	P	A	L	L	A	G	Y	I	T	E	R	I	T	R	L	F	H	I
Secondary structure
SS confidence
Disorder		?	?	?																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	W	L	A	G	V	F	L	T	I	A	G	M	I	I	S	F	M	W	G	L	D	G	K	H	I	A	L	E	A	H	T	F	D	S	V	K	F	I	L	T	T	A	L	A	G	G	L	L	A	V	P	L	Q	I	K	N	I	Q	Q
Secondary structure
SS confidence
Disorder																																														?										?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	G	I	T	P	E	D	I	S	K	E	I	N	G	Y	Y	C	C	F	Y	T	A	F	F	L	M	A	C	S	A	C	A	P	L	I	A	L	Q	Y	D	I	S	P	S	L	M	W	W	G	G	L	L	Y	W	L	A	A	L	V	T
Secondary structure
SS confidence
Disorder		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	L	W	A	A	S	Q	I	Q	A	L	K	K	L	T	C	A	I	S	Q	T	L	E	E	Q	P	V	L	N	S	K	S	W	L	T	S	L	Q	N	D	Y	S	L	P	D	S	L	T	E	R	I	W	L	T	L	I	S	Q	R	I
Secondary structure
SS confidence
Disorder																							?						?	?																													?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	R	G	E	L	R	E	F	E	L	A	D	G	N	W	L	L	N	N	A	W	Y	E	R	N	M	A	G	F	N	E	Q	L	K	E	N	L	S	F	T	P	D	E	L	K	T	L	F	R	N	R	L	N	L	S	P	E	A	N	D
Secondary structure
SS confidence
Disorder																																			?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	F	L	D	R	C	L	D	G	G	D	W	Y	P	F	S	E	G	R	R	F	V	S	F	H	H	V	D	E	L	R	I	C	A	S	C	G	L	T	E	V	H	H	A	P	E	N	H	K	P	D	P	E	W	Y	C	S	S	L	C
Secondary structure
SS confidence
Disorder																																							?				?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		R	E	T	E	T	L	C	Q	E	I	Y	E	R	P	Y	N	S	F	I	S	D	A	T	A	N	G	L	I	L	M	K	L	P	E	T	W	S	T	N	E	K	M	F	A	S	G	G	Q	G	H	G	F	A	A	E	R	G	N	H	I
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?	?	?	?		?	?	?			?	?	?		?	?	?	?	?	?	?	?				?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		V	D	R	V	R	L	K	N	A	R	I	L	G	D	N	N	A	R	N	G	A	D	R	L	V	S	G	T	E	I	Q	T	K	Y	C	S	T	A	A	R	S	V	G	A	A	F	D	G	Q	N	G	Q	Y	R	Y	M	G	N	N	G
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?			?	?		?	?			?																				?						?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Sequence		P	M	Q	L	E	V	P	R	D	Q	Y	A	G	A	V	E	T	M	R	N	K	I	R	E	G	K	V	E	E	R
Secondary structure
SS confidence
Disorder		?																							?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vlp chain A domain 1 Region: 266 - 304 Aligned: 35 Modelled: 39 Confidence: 61.7% Identity: 26% Fold: alpha/beta-Hammerhead Superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like Family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like Phyre2 PDB 1us7 chain B Region: 293 - 314 Aligned: 22 Modelled: 22 Confidence: 45.1% Identity: 32% Fold: Hsp90 co-chaperone CDC37 Superfamily: Hsp90 co-chaperone CDC37 Family: Hsp90 co-chaperone CDC37 Phyre2 PDB 1us7 chain B Region: 293 - 314 Aligned: 22 Modelled: 22 Confidence: 45.1% Identity: 32% PDB header:chaperone Chain: B: PDB Molecule:hsp90 co-chaperone cdc37; PDBTitle: complex of hsp90 and p50 Phyre2 PDB 2puy chain A Region: 299 - 358 Aligned: 42 Modelled: 42 Confidence: 39.5% Identity: 26% PDB header:transcription Chain: A: PDB Molecule:phd finger protein 21a; PDBTitle: crystal structure of the bhc80 phd finger Phyre2 PDB 2f7f chain A domain 2 Region: 266 - 345 Aligned: 73 Modelled: 80 Confidence: 35.7% Identity: 25% Fold: alpha/beta-Hammerhead Superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like Family: NadC N-terminal domain-like Phyre2 PDB 1k0g chain A Region: 480 - 509 Aligned: 30 Modelled: 30 Confidence: 33.6% Identity: 17% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 1ybe chain A domain 2 Region: 266 - 304 Aligned: 39 Modelled: 39 Confidence: 33.2% Identity: 26% Fold: alpha/beta-Hammerhead Superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like Family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like Phyre2 PDB 1i7q chain A Region: 481 - 509 Aligned: 29 Modelled: 29 Confidence: 32.7% Identity: 17% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 1i1q chain A Region: 478 - 509 Aligned: 32 Modelled: 32 Confidence: 31.5% Identity: 16% Fold: ADC synthase Superfamily: ADC synthase Family: ADC synthase Phyre2 PDB 1vlp chain A Region: 266 - 304 Aligned: 35 Modelled: 39 Confidence: 30.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of a putative nicotinate phosphoribosyltransferase2 (yor209c, npt1) from saccharomyces cerevisiae at 1.75 a resolution Phyre2 PDB 1j96 chain A Region: 271 - 317 Aligned: 42 Modelled: 42 Confidence: 29.9% Identity: 26% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1weq chain A Region: 317 - 357 Aligned: 41 Modelled: 41 Confidence: 28.6% Identity: 24% Fold: FYVE/PHD zinc finger Superfamily: FYVE/PHD zinc finger Family: PHD domain Phyre2 PDB 1q5m chain A Region: 271 - 317 Aligned: 42 Modelled: 47 Confidence: 28.3% Identity: 33% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1zbd chain B Region: 329 - 368 Aligned: 35 Modelled: 40 Confidence: 26.9% Identity: 26% Fold: FYVE/PHD zinc finger Superfamily: FYVE/PHD zinc finger Family: FYVE, a phosphatidylinositol-3-phosphate binding domain Phyre2 PDB 1yir chain A domain 2 Region: 267 - 304 Aligned: 33 Modelled: 38 Confidence: 26.6% Identity: 27% Fold: alpha/beta-Hammerhead Superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like Family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like Phyre2 PDB 1ah4 chain A Region: 271 - 317 Aligned: 42 Modelled: 47 Confidence: 25.2% Identity: 33% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3o37 chain D Region: 299 - 356 Aligned: 40 Modelled: 40 Confidence: 24.0% Identity: 38% PDB header:transcription/protein binding Chain: D: PDB Molecule:transcription intermediary factor 1-alpha; PDBTitle: crystal structure of trim24 phd-bromo complexed with h3(1-10)k42 peptide Phyre2 PDB 2alr chain A Region: 271 - 317 Aligned: 45 Modelled: 47 Confidence: 22.6% Identity: 29% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1hqt chain A Region: 271 - 317 Aligned: 47 Modelled: 47 Confidence: 21.8% Identity: 32% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3cta chain A domain 2 Region: 267 - 321 Aligned: 46 Modelled: 55 Confidence: 21.5% Identity: 22% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin kinase-like Family: CTP-dependent riboflavin kinase-like Phyre2 1 d1vlpa1 2 d1us7b_ 3 c1us7B_ 4 c2puyA_ 5 d2f7fa2 6 d1k0ga_ 7 d1ybea2 8 d1i7qa_ 9 d1i1qa_ 10 c1vlpA_ 11 d1j96a_ 12 d1weqa_ 13 d1q5ma_ 14 d1zbdb_ 15 d1yira2 16 d1ah4a_ 17 c3o37D_ 18 d2alra_ 19 d1hqta_ 20 d3ctaa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vlpa1 61.7 26 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like 2 d1us7b_ 45.1 32 Fold:Hsp90 co-chaperone CDC37 Superfamily:Hsp90 co-chaperone CDC37 Family:Hsp90 co-chaperone CDC37 3 c1us7B_ 45.1 32 PDB header:chaperone Chain: B: PDB Molecule:hsp90 co-chaperone cdc37; PDBTitle: complex of hsp90 and p50 4 c2puyA_ 39.5 26 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 21a; PDBTitle: crystal structure of the bhc80 phd finger 5 d2f7fa2 35.7 25 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like 6 d1k0ga_ 33.6 17 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 7 d1ybea2 33.2 26 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like 8 d1i7qa_ 32.7 17 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 9 d1i1qa_ 31.5 16 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 10 c1vlpA_ 30.0 26 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of a putative nicotinate phosphoribosyltransferase2 (yor209c, npt1) from saccharomyces cerevisiae at 1.75 a resolution 11 d1j96a_ 29.9 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 12 d1weqa_ 28.6 24 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain 13 d1q5ma_ 28.3 33 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 14 d1zbdb_ 26.9 26 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 15 d1yira2 26.6 27 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like 16 d1ah4a_ 25.2 33 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 17 c3o37D_ 24.0 38 PDB header:transcription/protein binding Chain: D: PDB Molecule:transcription intermediary factor 1-alpha; PDBTitle: crystal structure of trim24 phd-bromo complexed with h3(1-10)k42 peptide 18 d2alra_ 22.6 29 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 19 d1hqta_ 21.8 32 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 20 d3ctaa2 21.5 22 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 21 c2riqA_ not modelled 20.6 28 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 22 c3b4sA_ not modelled 20.0 56 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein luxt; PDBTitle: crystal structure of a luxt domain from vibrio2 parahaemolyticus rimd 2210633 23 d1mn4a_ not modelled 19.6 45 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:DNA-binding domain from NDT80 24 c1yj7A_ not modelled 19.5 19 PDB header:protein transport Chain: A: PDB Molecule:escj; PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj 25 c2obnA_ not modelled 19.2 26 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution 26 c1xwhA_ not modelled 19.2 41 PDB header:transcription Chain: A: PDB Molecule:autoimmune regulator; PDBTitle: nmr structure of the first phd finger of autoimmune2 regulator protein (aire1): insights into apeced 27 c2jvnA_ not modelled 18.7 30 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 28 d2g5fa1 not modelled 16.8 10 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 29 d1q4qa_ not modelled 15.6 21 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 30 d1iega_ not modelled 15.2 39 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 31 c3mhsE_ not modelled 15.0 33 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 32 c3h9mA_ not modelled 14.8 21 PDB header:lyase Chain: A: PDB Molecule:p-aminobenzoate synthetase, component i; PDBTitle: crystal structure of para-aminobenzoate synthetase,2 component i from cytophaga hutchinsonii 33 d2p6ra2 not modelled 14.6 26 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 34 d1afsa_ not modelled 14.4 28 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 35 c2im5C_ not modelled 14.3 26 PDB header:transferase Chain: C: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of nicotinate phosphoribosyltransferase2 from porphyromonas gingivalis 36 d1at3a_ not modelled 14.0 19 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 37 c2f6nA_ not modelled 13.7 21 PDB header:transcription Chain: A: PDB Molecule:bromodomain phd finger transcription factor; PDBTitle: crystal structure of phd finger-linker-bromodomain fragment2 of human bptf in the free form 38 d2g0ta1 not modelled 13.7 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 39 d1us0a_ not modelled 13.3 38 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 40 c2i6yA_ not modelled 13.3 10 PDB header:lyase Chain: A: PDB Molecule:anthranilate synthase component i, putative; PDBTitle: structure and mechanism of mycobacterium tuberculosis salicylate2 synthase, mbti 41 c2fqxA_ not modelled 13.3 22 PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine 42 c2f7fA_ not modelled 13.3 25 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase, putative; PDBTitle: crystal structure of enterococcus faecalis putative nicotinate2 phosphoribosyltransferase, new york structural genomics consortium 43 d2pbka1 not modelled 13.1 32 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 44 d1ubdc2 not modelled 13.0 38 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 45 c2l43A_ not modelled 12.7 19 PDB header:transcription Chain: A: PDB Molecule:n-teminal domain from histone h3.3, linker, phd1 domain PDBTitle: structural basis for histone code recognition by brpf2-phd1 finger 46 c2bs5A_ not modelled 12.5 47 PDB header:sugar binding protein Chain: A: PDB Molecule:fucose-binding lectin protein; PDBTitle: lectin from ralstonia solanacearum complexed with 2-2 fucosyllactose 47 d3efxd1 not modelled 12.4 43 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 48 d1vzva_ not modelled 12.4 21 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 49 d1vqow1 not modelled 12.4 13 Fold:Ribosomal protein L30p/L7e Superfamily:Ribosomal protein L30p/L7e Family:Ribosomal protein L30p/L7e 50 c3bu8B_ not modelled 11.8 16 PDB header:dna binding protein Chain: B: PDB Molecule:telomeric repeat-binding factor 2; PDBTitle: crystal structure of trf2 trfh domain and tin2 peptide2 complex 51 d1qdla_ not modelled 11.6 18 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 52 d1x3ha2 not modelled 11.3 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 53 c3pstA_ not modelled 11.1 17 PDB header:nuclear protein Chain: A: PDB Molecule:protein doa1; PDBTitle: crystal structure of pul and pfu(mutate) domain 54 d1xg8a_ not modelled 11.0 83 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:YuzD-like 55 d2olua1 not modelled 10.9 10 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 56 c3d6zA_ not modelled 10.6 33 PDB header:transcription regulator/dna Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator; PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine 57 c2euzA_ not modelled 10.6 50 PDB header:cell cycle/dna Chain: A: PDB Molecule:ndt80 protein; PDBTitle: structure of a ndt80-dna complex (mse mutant mc5t) 58 d1mnna_ not modelled 10.6 50 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:DNA-binding domain from NDT80 59 c3elfA_ not modelled 10.5 20 PDB header:lyase Chain: A: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: structural characterization of tetrameric mycobacterium tuberculosis2 fructose 1,6-bisphosphate aldolase - substrate binding and catalysis3 mechanism of a class iia bacterial aldolase 60 d1o6ea_ not modelled 10.0 29 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 61 d3chbd_ not modelled 10.0 44 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 62 c3ln3A_ not modelled 10.0 39 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodiol dehydrogenase; PDBTitle: crystal structure of putative reductase (np_038806.2) from2 mus musculus at 1.18 a resolution 63 c2krcA_ not modelled 9.6 43 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 64 c2ysmA_ not modelled 9.5 23 PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the first and second phd domain from2 myeloid/lymphoid or mixed-lineage leukemia protein 33 homolog 65 c2w0tA_ not modelled 9.4 31 PDB header:transcription Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like 2 protein; PDBTitle: solution structure of the fcs zinc finger domain of human2 lmbl2 66 c2l7pA_ not modelled 9.3 13 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase ashh2; PDBTitle: ashh2 a cw domain 67 c2a20A_ not modelled 9.3 26 PDB header:metal binding protein Chain: A: PDB Molecule:regulating synaptic membrane exocytosis protein PDBTitle: solution structure of rim2 zinc finger domain 68 c2e6rA_ not modelled 9.3 24 PDB header:dna binding protein Chain: A: PDB Molecule:jumonji/arid domain-containing protein 1d; PDBTitle: solution structure of the phd domain in smcy protein 69 d1npba_ not modelled 9.0 31 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 70 c3os6A_ not modelled 9.0 17 PDB header:isomerase Chain: A: PDB Molecule:isochorismate synthase dhbc; PDBTitle: crystal structure of putative 2,3-dihydroxybenzoate-specific2 isochorismate synthase, dhbc from bacillus anthracis. 71 d1olma1 not modelled 8.7 20 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 72 d2af7a1 not modelled 8.6 16 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 73 d1kjna_ not modelled 8.4 29 Fold:Hypothetical protein MTH777 (MT0777) Superfamily:Hypothetical protein MTH777 (MT0777) Family:Hypothetical protein MTH777 (MT0777) 74 d2h1ta1 not modelled 8.3 27 Fold:Spiral beta-roll Superfamily:PA1994-like Family:PA1994-like 75 d1c8aa2 not modelled 8.2 35 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 76 d1l0nk_ not modelled 8.2 33 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 77 d1i8ta1 not modelled 8.0 31 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:UDP-galactopyranose mutase, N-terminal domain 78 d2bv3a5 not modelled 7.9 17 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 79 c2wghA_ not modelled 7.9 24 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg. 80 d2ezla_ not modelled 7.8 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 81 c4a1cV_ not modelled 7.6 16 PDB header:ribosome Chain: V: PDB Molecule:60s ribosomal protein l7; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 82 c2zkr2_ not modelled 7.6 60 PDB header:ribosomal protein/rna Chain: 2: PDB Molecule:60s ribosomal protein l37e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 83 d2fyuk1 not modelled 7.6 39 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 84 c2cvuA_ not modelled 7.6 32 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i 85 c3p5rB_ not modelled 7.4 23 PDB header:lyase Chain: B: PDB Molecule:taxadiene synthase; PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate 86 c3r1rB_ not modelled 7.4 28 PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli 87 c3jueA_ not modelled 7.4 32 PDB header:protein transport/endocytosis Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of arfgap and ank repeat domain of acap1 88 d2yt9a1 not modelled 7.3 63 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 89 c1s1iY_ not modelled 7.2 80 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 90 c3jywY_ not modelled 7.2 80 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 91 c2olvA_ not modelled 7.1 9 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex 92 d1b8da_ not modelled 7.1 28 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 93 c3fehA_ not modelled 7.1 38 PDB header:hydrolase activator Chain: A: PDB Molecule:centaurin-alpha-1; PDBTitle: crystal structure of full length centaurin alpha-1 94 c3k7bA_ not modelled 7.0 36 PDB header:viral protein Chain: A: PDB Molecule:protein a33; PDBTitle: the structure of the poxvirus a33 protein reveals a dimer of unique c-2 type lectin-like domains. 95 d1xp3a1 not modelled 6.9 22 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV 96 d1mm2a_ not modelled 6.9 31 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain 97 d1bb8a_ not modelled 6.8 33 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:DNA-binding domain from tn916 integrase 98 d1zina2 not modelled 6.8 71 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 99 c1ybeA_ not modelled 6.7 23 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0