PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3bu8B_

Fold library id	PDB Header	Molecule	Title
c3bu8B_	PDB header: dna binding protein	Chain: B: PDB Molecule: telomeric repeat-binding factor 2;	PDBTitle: crystal structure of trf2 trfh domain and tin2 peptide2 complex

Links to external resources
Added to library: Tue Mar 16 12:34:47 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A G E A R L E E A V N R W V L K F Y F H E A L R A F R G S R Y G D F R Q I R D I M Q A L L V R P L G K E H T V S R L L R V M Q C L S R I E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G E N L D C S F D M E A E L T P L E S A I N V L E M I K T E F T L T E A V V E S S R K L V K E A A V I I C I K N K E F E K A S K I L K K H M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S S S T T
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . .

Sequence S K D P T T Q K L R N D L L N I I R E K N L A H P V I Q N F S Y E T F Q Q K M L R F L E S H L D D A E P Y L L T M A K K A L K S E S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T S T
T T S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	G	E	A	R	L	E	E	A	V	N	R	W	V	L	K	F	Y	F	H	E	A	L	R	A	F	R	G	S	R	Y	G	D	F	R	Q	I	R	D	I	M	Q	A	L	L	V	R	P	L	G	K	E	H	T	V	S	R	L	L	R	V	M	Q	C	L	S	R	I	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												T	T																T	T	S																							T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	E	N	L	D	C	S	F	D	M	E	A	E	L	T	P	L	E	S	A	I	N	V	L	E	M	I	K	T	E	F	T	L	T	E	A	V	V	E	S	S	R	K	L	V	K	E	A	A	V	I	I	C	I	K	N	K	E	F	E	K	A	S	K	I	L	K	K	H	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		T	T				S	S	S	T	T																		T	T																								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Sequence	S	K	D	P	T	T	Q	K	L	R	N	D	L	L	N	I	I	R	E	K	N	L	A	H	P	V	I	Q	N	F	S	Y	E	T	F	Q	Q	K	M	L	R	F	L	E	S	H	L	D	D	A	E	P	Y	L	L	T	M	A	K	K	A	L	K	S	E	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T														T		T	T	S					T																T	T	S															T	T	T