BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (510 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P76361 Inner membrane protein yeeR n=25 Tax=Enterobacte...   918   0.0  
UniRef50_C0R115 Putative uncharacterized protein n=1 Tax=Brachys...   322   3e-86
UniRef50_D2RK21 Putative uncharacterized protein n=1 Tax=Acidami...   235   4e-60
UniRef50_C7G879 Putative uncharacterized protein n=1 Tax=Rosebur...   203   1e-50
UniRef50_Q7UUU7 Putative uncharacterized protein n=1 Tax=Rhodopi...   172   3e-41
UniRef50_A4BP35 Putative uncharacterized protein n=1 Tax=Nitroco...   171   7e-41
UniRef50_C9LXG5 Inner membrane protein YeeR n=1 Tax=Selenomonas ...   162   2e-38
UniRef50_A7NRD7 Putative uncharacterized protein n=1 Tax=Roseifl...   158   6e-37
UniRef50_A4ECC1 Putative uncharacterized protein n=1 Tax=Collins...   149   2e-34
UniRef50_B9WSS5 Putative uncharacterized protein n=1 Tax=Strepto...   139   3e-31
UniRef50_UPI00006CBFCE TPR Domain containing protein n=4 Tax=Tet...   134   1e-29
UniRef50_C5RQT6 Putative uncharacterized protein n=1 Tax=Clostri...    93   3e-17

>UniRef50_P76361 Inner membrane protein yeeR n=25 Tax=Enterobacteriaceae
           RepID=YEER_ECOLI
          Length = 510

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 510/510 (100%), Positives = 510/510 (100%)

Query: 1   MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPALLAGYITERITRLFHI 60
           MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPALLAGYITERITRLFHI
Sbjct: 1   MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPALLAGYITERITRLFHI 60

Query: 61  RWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAGGLLAVPLQIKNIQQ 120
           RWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAGGLLAVPLQIKNIQQ
Sbjct: 61  RWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAGGLLAVPLQIKNIQQ 120

Query: 121 NGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYDISPSLMWWGGLLYWLAALVT 180
           NGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYDISPSLMWWGGLLYWLAALVT
Sbjct: 121 NGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYDISPSLMWWGGLLYWLAALVT 180

Query: 181 LLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQNDYSLPDSLTERIWLTLISQRI 240
           LLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQNDYSLPDSLTERIWLTLISQRI
Sbjct: 181 LLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQNDYSLPDSLTERIWLTLISQRI 240

Query: 241 SRGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEAND 300
           SRGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEAND
Sbjct: 241 SRGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEAND 300

Query: 301 DFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLC 360
           DFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLC
Sbjct: 301 DFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLC 360

Query: 361 RETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHI 420
           RETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHI
Sbjct: 361 RETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHI 420

Query: 421 VDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG 480
           VDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG
Sbjct: 421 VDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG 480

Query: 481 PMQLEVPRDQYAGAVETMRNKIREGKVEER 510
           PMQLEVPRDQYAGAVETMRNKIREGKVEER
Sbjct: 481 PMQLEVPRDQYAGAVETMRNKIREGKVEER 510


>UniRef50_C0R115 Putative uncharacterized protein n=1 Tax=Brachyspira hyodysenteriae
           WA1 RepID=C0R115_BRAHW
          Length = 647

 Score =  322 bits (824), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 123/271 (45%), Gaps = 18/271 (6%)

Query: 242 RGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEANDD 301
           +G++++  L D ++  N  ++ +     NE +K +     +   +  +  L LS E   D
Sbjct: 72  KGKIKKIYLFDKDYYFNINFFNKCSDKANEIIKLDTRVDKEFAVSSLKETLPLSDECLYD 131

Query: 302 FLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLCR 361
           F     D  +   F +G  FV   + D++ ICASCG   +  + EN+ P+ EW+CS +C 
Sbjct: 132 FFIVKNDDINLLEFDDGEFFVHNINNDKIVICASCGKAGLISSLENYNPNEEWFCSLICV 191

Query: 362 ETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIV 421
            TE  C +I  +    F ++ T   +++         N+ +F      +    E    ++
Sbjct: 192 STEDKCYKIASQ--KDFPNNYTEPDIVV-----DSDGNQLIFNENYNYNKNKTE---FLI 241

Query: 422 DRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAF--DGQNG--QYRYMG 477
           +++   N  +L ++N     ++ V    I+ K       ++ + F  D + G  QY+Y  
Sbjct: 242 NKIDPNNDAVLENDNIFLELEKYVP---IKNKIYKNVEETINSMFIIDEEIGKEQYKYYD 298

Query: 478 NNGP-MQLEVPRDQYAGAVETMRNKIREGKV 507
             G  +  EVP+D Y  ++E M+ KI  G +
Sbjct: 299 EEGKALSFEVPKDFYEASIEKMKEKILNGSI 329


>UniRef50_D2RK21 Putative uncharacterized protein n=1 Tax=Acidaminococcus fermentans
           DSM 20731 RepID=D2RK21_ACIFE
          Length = 622

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 103/202 (50%), Gaps = 15/202 (7%)

Query: 318 GRRFV--SFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLCRETETLCQEIYERPY 375
           G  F+     H+  + I  + G +     PE H       C  L    E           
Sbjct: 8   GPFFLLSQNLHIAYVIISVNAGRSGNGFVPE-HSSTYMLICGGL--HMEKKIYHQNSGLA 64

Query: 376 NSFISDATANGLI--------LMKLPETWSTNEKM-FASGGQGHGFAAERGNHIVDRVRL 426
                +A     +        L    ++ + NE+M   +  QG GFAAE+ N ++D +  
Sbjct: 65  EKLRKNANEQEKVDTGKIGGSLYGSMDSAAHNEQMLRFNARQGQGFAAEQANDLIDSMGG 124

Query: 427 KNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG-PMQLE 485
           KNA+I+G++NA+NGADRLV G  IQ+KYC TA  SV AAF+ Q   YRY+  NG PMQLE
Sbjct: 125 KNAQIVGNDNAKNGADRLVDGMLIQSKYCQTAQASVNAAFNPQTKYYRYIDRNGTPMQLE 184

Query: 486 VPRDQYAGAVETMRNKIREGKV 507
           VP DQY  AV+ MR KI EGKV
Sbjct: 185 VPSDQYNEAVQLMRRKIAEGKV 206


>UniRef50_C7G879 Putative uncharacterized protein n=1 Tax=Roseburia intestinalis
           L1-82 RepID=C7G879_9FIRM
          Length = 638

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 4/164 (2%)

Query: 347 NHKPDPEWY---CSSLCRETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMF 403
           N  P   ++    + + +  E   +++  +   S    A A G+      +     E+  
Sbjct: 126 NKTPLYRFFKELLALIRQPAEDNIEKLNVQTDKSENYGAMAGGISSAAYGQINKLYEEEK 185

Query: 404 ASGGQGHGFAAERGNHIVDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVG 463
             G QGHGFAAER N++ D +   +A+I+GD+N +NGADR+V G  IQ+KYC T +  V 
Sbjct: 186 FHGRQGHGFAAERANNLYDNLTGHDAKIVGDDNVKNGADRMVDGIFIQSKYCQTGSACVN 245

Query: 464 AAFDGQNGQYRYMGNNGPMQLEVPRDQYAGAVETMRNKIREGKV 507
             FD Q G +RY+ +  PMQ+EVP D+Y  AVE M++KIR+GKV
Sbjct: 246 ECFDEQ-GNFRYLKDGKPMQIEVPSDKYDAAVEAMQDKIRKGKV 288


>UniRef50_Q7UUU7 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica
           RepID=Q7UUU7_RHOBA
          Length = 488

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/137 (40%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 371 YERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNAR 430
             +P N     A    L    +  +   ++        GHGF AE  NH+ D  R + A 
Sbjct: 1   MTQPSNDKRKPAVER-LASPAIAHSLERSQIAKYHTKGGHGFTAEDANHLADVFRGRRAE 59

Query: 431 ILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRDQ 490
           I+G NN  NGADR+V G  IQ+KY  TAA++V +AF  ++G YRY        LEVP+DQ
Sbjct: 60  IIGINNEANGADRIVDGLRIQSKYYQTAAKTVASAFASESGLYRY----AQQVLEVPKDQ 115

Query: 491 YAGAVETMRNKIREGKV 507
           Y   VE MR +I  GKV
Sbjct: 116 YDACVELMRKRIAAGKV 132


>UniRef50_A4BP35 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231
           RepID=A4BP35_9GAMM
          Length = 494

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 370 IYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNA 429
           I      ++  +  ANG        +    +        GHGFAAE  + +  ++  ++A
Sbjct: 5   IMANHKKNYPFN-IANGYSAAATASSLEKTQIGKFHTKGGHGFAAEEASALSYKLHGQDA 63

Query: 430 RILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRD 489
           +I+G  N  NGAD L +G ++Q KYC +   ++ AAF   +G YRY    G   LEVP D
Sbjct: 64  KIIGGTNQANGADLLANGVQLQLKYCQSPQATINAAFAPDSGNYRY----GDQVLEVPAD 119

Query: 490 QYAGAVETMRNKIREGKV 507
           QY   +E MR KI  GKV
Sbjct: 120 QYESCIELMRQKISGGKV 137


>UniRef50_C9LXG5 Inner membrane protein YeeR n=1 Tax=Selenomonas sputigena ATCC
           35185 RepID=C9LXG5_9FIRM
          Length = 586

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/140 (43%), Positives = 86/140 (61%), Gaps = 6/140 (4%)

Query: 370 IYERPYNSFISDATANGLILMKLPETWSTNEKM-FASGGQGHGFAAERGNHIVDRVRLKN 428
           I +R          A G       E+ +  +++   +  QGHG+AAE+ N ++D++  K+
Sbjct: 15  IRQRLQGEEKEGGNAAGFNAA--MESAAHGDRLGRFNARQGHGYAAEQVNDLIDKLSGKD 72

Query: 429 ARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG-PMQLEVP 487
           A ILGD+NA+NG DR+V G  IQTKYC+ A  +V AAF  +NG+YRY+   G PMQLEVP
Sbjct: 73  AWILGDDNAKNGPDRMVDGQLIQTKYCANAQATVDAAF--RNGKYRYLDAQGKPMQLEVP 130

Query: 488 RDQYAGAVETMRNKIREGKV 507
            DQY  ++  M  KI EG+V
Sbjct: 131 SDQYQASIRCMEEKIAEGQV 150


>UniRef50_A7NRD7 Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii
           DSM 13941 RepID=A7NRD7_ROSCS
          Length = 504

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 373 RPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNARIL 432
               S  +     GL   ++       +        GHGFAAE  N   D +RL+N  I 
Sbjct: 4   NQSFSDRTGKVVMGLASAEIARALERLQISKYHTKGGHGFAAEDANAYGDALRLRNVEIT 63

Query: 433 GDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRDQYA 492
           G+ N  NG DR+V GT IQTKY  T+  ++ AAFD   G YRY G      LEVP DQY 
Sbjct: 64  GNANKINGPDRIVDGTPIQTKYFQTSDATINAAFDHTTGLYRYQG----QVLEVPADQYD 119

Query: 493 GAVETMRNKIREGKV 507
             VE  + KI EGKV
Sbjct: 120 ECVELFQRKIAEGKV 134


>UniRef50_A4ECC1 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4ECC1_9ACTN
          Length = 730

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/109 (47%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 400 EKMFASGGQGHGFAAERGNHIVDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAA 459
           ++   +   GHG  AE  N I+DR++   A ILG +NA+NGADR V G  IQTKY  TA 
Sbjct: 256 QRAAVNNPAGHGELAEEANSIIDRLQGHQAEILGRDNAKNGADRSVDGVLIQTKYYKTAR 315

Query: 460 RSVGAAFDGQNGQYRYMGNN-GPMQLEVPRDQYAGAVETMRNKIREGKV 507
            S+ A FD  + QYRY+  +  PMQLEVP+DQY   +     KI +GKV
Sbjct: 316 GSLEACFDPSSHQYRYLTEDRTPMQLEVPKDQYQQVLRGFEKKISQGKV 364


>UniRef50_B9WSS5 Putative uncharacterized protein n=1 Tax=Streptococcus suis 89/1591
           RepID=B9WSS5_STRSU
          Length = 349

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 10/139 (7%)

Query: 374 PYNSFISDATANGLILMKLPETWSTNEKMFA---SGGQGHGFAAERGNHIVDRVRLKNAR 430
              +F + A    +I + +   +   +  F       QGHG AAE  N+++D+++    +
Sbjct: 211 HTENFQNGAKIGSIIGLNMMLGFHLKDIQFNAIAKAPQGHGHAAEYANNVIDKIKYPFQK 270

Query: 431 I--LGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQN-GQYRYMGNNGPMQLEVP 487
           +  +G +N +NGADR+V   +IQTKY + A+ ++ AAFD  N G+YRY G    MQLEVP
Sbjct: 271 VEQVGRDNVKNGADRIVGNQKIQTKYYAKASGTINAAFDKANGGEYRYKG----MQLEVP 326

Query: 488 RDQYAGAVETMRNKIREGK 506
           +DQY  +++ M+ KI+ GK
Sbjct: 327 KDQYNESIQLMKKKIKAGK 345


>UniRef50_UPI00006CBFCE TPR Domain containing protein n=4 Tax=Tetrahymena thermophila
           RepID=UPI00006CBFCE
          Length = 790

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 15/141 (10%)

Query: 373 RPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNARIL 432
           +    +  +       L    +    N+ +  +  QGHG+AAE+ N+++D ++   A +L
Sbjct: 4   QKKIKYTKNLKVPPYNLQNDGKY--YNDTLKFNARQGHGYAAEQANNLIDELKGDKAVVL 61

Query: 433 GDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRDQYA 492
            +   +NG DR+V+G  IQTKYC  A  +    F  ++G++RY G     Q+EVP +QY 
Sbjct: 62  NEY-IKNGPDRIVNGNLIQTKYCKNAYSTFKNCF--KDGEFRYNG----QQIEVPPEQYD 114

Query: 493 GAVETMRNK------IREGKV 507
             ++  ++K      IR+G V
Sbjct: 115 EVIQLFQDKGIKDVTIRKGHV 135


>UniRef50_C5RQT6 Putative uncharacterized protein n=1 Tax=Clostridium cellulovorans
           743B RepID=C5RQT6_CLOCL
          Length = 590

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 429 ARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGP---MQLE 485
             ++  NN  +  D      +IQT YC +A + +   F+ +N  +    +      +++E
Sbjct: 163 DTVIKINNDVSSIDSFKGDVKIQTYYCESAEKFINQFFNEEN-DFLLCDSKQKVKNIRIE 221

Query: 486 VPRDQYAGAVETMRNKIREGKV 507
           VP+D Y   V+ M  KI+EG +
Sbjct: 222 VPKDIYIEVVKLMSEKIKEGMI 243


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P76361 Inner membrane protein yeeR n=25 Tax=Enterobacte...   907   0.0  
UniRef50_C0R115 Putative uncharacterized protein n=1 Tax=Brachys...   316   1e-84
UniRef50_D2RK21 Putative uncharacterized protein n=1 Tax=Acidami...   228   4e-58
UniRef50_C7G879 Putative uncharacterized protein n=1 Tax=Rosebur...   207   6e-52
UniRef50_C9LXG5 Inner membrane protein YeeR n=1 Tax=Selenomonas ...   171   9e-41
UniRef50_A4BP35 Putative uncharacterized protein n=1 Tax=Nitroco...   169   2e-40
UniRef50_Q7UUU7 Putative uncharacterized protein n=1 Tax=Rhodopi...   168   5e-40
UniRef50_A7NRD7 Putative uncharacterized protein n=1 Tax=Roseifl...   167   1e-39
UniRef50_B9WSS5 Putative uncharacterized protein n=1 Tax=Strepto...   153   1e-35
UniRef50_A4ECC1 Putative uncharacterized protein n=1 Tax=Collins...   150   8e-35
UniRef50_UPI00006CBFCE TPR Domain containing protein n=4 Tax=Tet...   145   3e-33
UniRef50_C5RQT6 Putative uncharacterized protein n=1 Tax=Clostri...    92   3e-17

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_P76361 Inner membrane protein yeeR n=25 Tax=Enterobacteriaceae
           RepID=YEER_ECOLI
          Length = 510

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 510/510 (100%), Positives = 510/510 (100%)

Query: 1   MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPALLAGYITERITRLFHI 60
           MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPALLAGYITERITRLFHI
Sbjct: 1   MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPALLAGYITERITRLFHI 60

Query: 61  RWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAGGLLAVPLQIKNIQQ 120
           RWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAGGLLAVPLQIKNIQQ
Sbjct: 61  RWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAGGLLAVPLQIKNIQQ 120

Query: 121 NGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYDISPSLMWWGGLLYWLAALVT 180
           NGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYDISPSLMWWGGLLYWLAALVT
Sbjct: 121 NGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYDISPSLMWWGGLLYWLAALVT 180

Query: 181 LLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQNDYSLPDSLTERIWLTLISQRI 240
           LLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQNDYSLPDSLTERIWLTLISQRI
Sbjct: 181 LLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQNDYSLPDSLTERIWLTLISQRI 240

Query: 241 SRGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEAND 300
           SRGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEAND
Sbjct: 241 SRGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEAND 300

Query: 301 DFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLC 360
           DFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLC
Sbjct: 301 DFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLC 360

Query: 361 RETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHI 420
           RETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHI
Sbjct: 361 RETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHI 420

Query: 421 VDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG 480
           VDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG
Sbjct: 421 VDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG 480

Query: 481 PMQLEVPRDQYAGAVETMRNKIREGKVEER 510
           PMQLEVPRDQYAGAVETMRNKIREGKVEER
Sbjct: 481 PMQLEVPRDQYAGAVETMRNKIREGKVEER 510


>UniRef50_C0R115 Putative uncharacterized protein n=1 Tax=Brachyspira hyodysenteriae
           WA1 RepID=C0R115_BRAHW
          Length = 647

 Score =  316 bits (810), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 123/271 (45%), Gaps = 18/271 (6%)

Query: 242 RGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEANDD 301
           +G++++  L D ++  N  ++ +     NE +K +     +   +  +  L LS E   D
Sbjct: 72  KGKIKKIYLFDKDYYFNINFFNKCSDKANEIIKLDTRVDKEFAVSSLKETLPLSDECLYD 131

Query: 302 FLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLCR 361
           F     D  +   F +G  FV   + D++ ICASCG   +  + EN+ P+ EW+CS +C 
Sbjct: 132 FFIVKNDDINLLEFDDGEFFVHNINNDKIVICASCGKAGLISSLENYNPNEEWFCSLICV 191

Query: 362 ETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIV 421
            TE  C +I  +    F ++ T   +++         N+ +F      +    E    ++
Sbjct: 192 STEDKCYKIASQ--KDFPNNYTEPDIVV-----DSDGNQLIFNENYNYNKNKTE---FLI 241

Query: 422 DRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAF--DGQNG--QYRYMG 477
           +++   N  +L ++N     ++ V    I+ K       ++ + F  D + G  QY+Y  
Sbjct: 242 NKIDPNNDAVLENDNIFLELEKYVP---IKNKIYKNVEETINSMFIIDEEIGKEQYKYYD 298

Query: 478 NNGP-MQLEVPRDQYAGAVETMRNKIREGKV 507
             G  +  EVP+D Y  ++E M+ KI  G +
Sbjct: 299 EEGKALSFEVPKDFYEASIEKMKEKILNGSI 329


>UniRef50_D2RK21 Putative uncharacterized protein n=1 Tax=Acidaminococcus fermentans
           DSM 20731 RepID=D2RK21_ACIFE
          Length = 622

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/202 (37%), Positives = 102/202 (50%), Gaps = 15/202 (7%)

Query: 318 GRRFV--SFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLCRETETLCQEIYERPY 375
           G  F+     H+  + I  + G +     PE H       C  L    E           
Sbjct: 8   GPFFLLSQNLHIAYVIISVNAGRSGNGFVPE-HSSTYMLICGGL--HMEKKIYHQNSGLA 64

Query: 376 NSFISDATANGLI--------LMKLPETWSTN-EKMFASGGQGHGFAAERGNHIVDRVRL 426
                +A     +        L    ++ + N + +  +  QG GFAAE+ N ++D +  
Sbjct: 65  EKLRKNANEQEKVDTGKIGGSLYGSMDSAAHNEQMLRFNARQGQGFAAEQANDLIDSMGG 124

Query: 427 KNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG-PMQLE 485
           KNA+I+G++NA+NGADRLV G  IQ+KYC TA  SV AAF+ Q   YRY+  NG PMQLE
Sbjct: 125 KNAQIVGNDNAKNGADRLVDGMLIQSKYCQTAQASVNAAFNPQTKYYRYIDRNGTPMQLE 184

Query: 486 VPRDQYAGAVETMRNKIREGKV 507
           VP DQY  AV+ MR KI EGKV
Sbjct: 185 VPSDQYNEAVQLMRRKIAEGKV 206


>UniRef50_C7G879 Putative uncharacterized protein n=1 Tax=Roseburia intestinalis
           L1-82 RepID=C7G879_9FIRM
          Length = 638

 Score =  207 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 4/164 (2%)

Query: 347 NHKPDPEWY---CSSLCRETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMF 403
           N  P   ++    + + +  E   +++  +   S    A A G+      +     E+  
Sbjct: 126 NKTPLYRFFKELLALIRQPAEDNIEKLNVQTDKSENYGAMAGGISSAAYGQINKLYEEEK 185

Query: 404 ASGGQGHGFAAERGNHIVDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVG 463
             G QGHGFAAER N++ D +   +A+I+GD+N +NGADR+V G  IQ+KYC T +  V 
Sbjct: 186 FHGRQGHGFAAERANNLYDNLTGHDAKIVGDDNVKNGADRMVDGIFIQSKYCQTGSACVN 245

Query: 464 AAFDGQNGQYRYMGNNGPMQLEVPRDQYAGAVETMRNKIREGKV 507
             FD Q G +RY+ +  PMQ+EVP D+Y  AVE M++KIR+GKV
Sbjct: 246 ECFDEQ-GNFRYLKDGKPMQIEVPSDKYDAAVEAMQDKIRKGKV 288


>UniRef50_C9LXG5 Inner membrane protein YeeR n=1 Tax=Selenomonas sputigena ATCC
           35185 RepID=C9LXG5_9FIRM
          Length = 586

 Score =  171 bits (432), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 60/139 (43%), Positives = 82/139 (58%), Gaps = 4/139 (2%)

Query: 370 IYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNA 429
           I +R          A G     +      +     +  QGHG+AAE+ N ++D++  K+A
Sbjct: 15  IRQRLQGEEKEGGNAAGFN-AAMESAAHGDRLGRFNARQGHGYAAEQVNDLIDKLSGKDA 73

Query: 430 RILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG-PMQLEVPR 488
            ILGD+NA+NG DR+V G  IQTKYC+ A  +V AAF  +NG+YRY+   G PMQLEVP 
Sbjct: 74  WILGDDNAKNGPDRMVDGQLIQTKYCANAQATVDAAF--RNGKYRYLDAQGKPMQLEVPS 131

Query: 489 DQYAGAVETMRNKIREGKV 507
           DQY  ++  M  KI EG+V
Sbjct: 132 DQYQASIRCMEEKIAEGQV 150


>UniRef50_A4BP35 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231
           RepID=A4BP35_9GAMM
          Length = 494

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 370 IYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNA 429
           I      ++  +  ANG        +    +        GHGFAAE  + +  ++  ++A
Sbjct: 5   IMANHKKNYPFN-IANGYSAAATASSLEKTQIGKFHTKGGHGFAAEEASALSYKLHGQDA 63

Query: 430 RILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRD 489
           +I+G  N  NGAD L +G ++Q KYC +   ++ AAF   +G YRY    G   LEVP D
Sbjct: 64  KIIGGTNQANGADLLANGVQLQLKYCQSPQATINAAFAPDSGNYRY----GDQVLEVPAD 119

Query: 490 QYAGAVETMRNKIREGKV 507
           QY   +E MR KI  GKV
Sbjct: 120 QYESCIELMRQKISGGKV 137


>UniRef50_Q7UUU7 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica
           RepID=Q7UUU7_RHOBA
          Length = 488

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/137 (40%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 371 YERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNAR 430
             +P N     A    L    +  +   ++        GHGF AE  NH+ D  R + A 
Sbjct: 1   MTQPSNDKRKPAVER-LASPAIAHSLERSQIAKYHTKGGHGFTAEDANHLADVFRGRRAE 59

Query: 431 ILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRDQ 490
           I+G NN  NGADR+V G  IQ+KY  TAA++V +AF  ++G YRY        LEVP+DQ
Sbjct: 60  IIGINNEANGADRIVDGLRIQSKYYQTAAKTVASAFASESGLYRY----AQQVLEVPKDQ 115

Query: 491 YAGAVETMRNKIREGKV 507
           Y   VE MR +I  GKV
Sbjct: 116 YDACVELMRKRIAAGKV 132


>UniRef50_A7NRD7 Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii
           DSM 13941 RepID=A7NRD7_ROSCS
          Length = 504

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 373 RPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNARIL 432
               S  +     GL   ++       +        GHGFAAE  N   D +RL+N  I 
Sbjct: 4   NQSFSDRTGKVVMGLASAEIARALERLQISKYHTKGGHGFAAEDANAYGDALRLRNVEIT 63

Query: 433 GDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRDQYA 492
           G+ N  NG DR+V GT IQTKY  T+  ++ AAFD   G YRY G      LEVP DQY 
Sbjct: 64  GNANKINGPDRIVDGTPIQTKYFQTSDATINAAFDHTTGLYRYQG----QVLEVPADQYD 119

Query: 493 GAVETMRNKIREGKV 507
             VE  + KI EGKV
Sbjct: 120 ECVELFQRKIAEGKV 134


>UniRef50_B9WSS5 Putative uncharacterized protein n=1 Tax=Streptococcus suis 89/1591
           RepID=B9WSS5_STRSU
          Length = 349

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 12/151 (7%)

Query: 364 ETLCQEIYER--PYNSFISDATANGLILMKLPETWSTNEKMFA---SGGQGHGFAAERGN 418
           E +   + +      +F + A    +I + +   +   +  F       QGHG AAE  N
Sbjct: 199 EKVIDRLQKNDFHTENFQNGAKIGSIIGLNMMLGFHLKDIQFNAIAKAPQGHGHAAEYAN 258

Query: 419 HIVDRVRLKNARI--LGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQN-GQYRY 475
           +++D+++    ++  +G +N +NGADR+V   +IQTKY + A+ ++ AAFD  N G+YRY
Sbjct: 259 NVIDKIKYPFQKVEQVGRDNVKNGADRIVGNQKIQTKYYAKASGTINAAFDKANGGEYRY 318

Query: 476 MGNNGPMQLEVPRDQYAGAVETMRNKIREGK 506
            G    MQLEVP+DQY  +++ M+ KI+ GK
Sbjct: 319 KG----MQLEVPKDQYNESIQLMKKKIKAGK 345


>UniRef50_A4ECC1 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4ECC1_9ACTN
          Length = 730

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 52/109 (47%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 400 EKMFASGGQGHGFAAERGNHIVDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAA 459
           ++   +   GHG  AE  N I+DR++   A ILG +NA+NGADR V G  IQTKY  TA 
Sbjct: 256 QRAAVNNPAGHGELAEEANSIIDRLQGHQAEILGRDNAKNGADRSVDGVLIQTKYYKTAR 315

Query: 460 RSVGAAFDGQNGQYRYMGNN-GPMQLEVPRDQYAGAVETMRNKIREGKV 507
            S+ A FD  + QYRY+  +  PMQLEVP+DQY   +     KI +GKV
Sbjct: 316 GSLEACFDPSSHQYRYLTEDRTPMQLEVPKDQYQQVLRGFEKKISQGKV 364


>UniRef50_UPI00006CBFCE TPR Domain containing protein n=4 Tax=Tetrahymena thermophila
           RepID=UPI00006CBFCE
          Length = 790

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 15/141 (10%)

Query: 373 RPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNARIL 432
           +    +  +       L    +    N+ +  +  QGHG+AAE+ N+++D ++   A +L
Sbjct: 4   QKKIKYTKNLKVPPYNLQNDGKY--YNDTLKFNARQGHGYAAEQANNLIDELKGDKAVVL 61

Query: 433 GDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRDQYA 492
            +   +NG DR+V+G  IQTKYC  A  +    F  ++G++RY G     Q+EVP +QY 
Sbjct: 62  NEY-IKNGPDRIVNGNLIQTKYCKNAYSTFKNCF--KDGEFRYNG----QQIEVPPEQYD 114

Query: 493 GAVETMRNK------IREGKV 507
             ++  ++K      IR+G V
Sbjct: 115 EVIQLFQDKGIKDVTIRKGHV 135


>UniRef50_C5RQT6 Putative uncharacterized protein n=1 Tax=Clostridium cellulovorans
           743B RepID=C5RQT6_CLOCL
          Length = 590

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 429 ARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNGP---MQLE 485
             ++  NN  +  D      +IQT YC +A + +   F+ +N  +    +      +++E
Sbjct: 163 DTVIKINNDVSSIDSFKGDVKIQTYYCESAEKFINQFFNEEN-DFLLCDSKQKVKNIRIE 221

Query: 486 VPRDQYAGAVETMRNKIREGKV 507
           VP+D Y   V+ M  KI+EG +
Sbjct: 222 VPKDIYIEVVKLMSEKIKEGMI 243


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.320    0.134    0.380 

Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,883,404,797
Number of Sequences: 3077464
Number of extensions: 72924655
Number of successful extensions: 252203
Number of sequences better than 1.0e-01: 14
Number of HSP's better than  0.1 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 252136
Number of HSP's gapped (non-prelim): 31
length of query: 510
length of database: 1,040,396,356
effective HSP length: 133
effective length of query: 377
effective length of database: 631,093,644
effective search space: 237922303788
effective search space used: 237922303788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)
