15/01/2012 21:52:15 : INFO  : Run start: Sun Jan 15 21:52:13 GMT 2012
15/01/2012 21:52:24 : INFO  : Initialised job
15/01/2012 21:52:27 : INFO  : Renaming log file 'phyre2_20120115_215212.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/6065ac5873f4750b/phyre_20120115_215212.log'
15/01/2012 21:52:29 : INFO  : Initialised job:
Sequence
>batch____
MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPALLAGYITERITRLFHI
RWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAGGLLAVPLQIKNIQQ
NGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYDISPSLMWWGGLLYWLAALVT
LLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQNDYSLPDSLTERIWLTLISQRI
SRGELREFELADGNWLLNNAWYERNMAGFNEQLKENLSFTPDELKTLFRNRLNLSPEAND
DFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLC
RETETLCQEIYERPYNSFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHI
VDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAARSVGAAFDGQNGQYRYMGNNG
PMQLEVPRDQYAGAVETMRNKIREGKVEER

15/01/2012 21:52:32 : INFO  : Checked sequence
15/01/2012 21:52:38 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 21:52:41 : INFO  : PSI-BLAST 3 iterations
15/01/2012 21:54:47 : INFO  : PSI-BLAST 5 iterations
15/01/2012 21:56:13 : INFO  : Finished PSI-BLAST
15/01/2012 21:56:18 : INFO  : Running Buildali to generate a3m file
15/01/2012 22:00:30 : INFO  : Converting to HMM
15/01/2012 22:00:34 : INFO  : Calibrating HMM
15/01/2012 22:00:59 : INFO  : Searching HMM database
15/01/2012 22:09:36 : INFO  : Finished buildali
15/01/2012 22:09:39 : INFO  : Predicting secondary structure
15/01/2012 22:09:55 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 22:09:58 : INFO  : Predicting Disordered regions
15/01/2012 22:10:06 : INFO  : Predicted Disorder (Disopred)
15/01/2012 22:10:09 : INFO  : Running memsat_svm check
15/01/2012 22:14:07 : INFO  : Running memsat_svm full
15/01/2012 22:18:51 : INFO  : Predicted Transmembrane (memsat_svm) ID '6065ac5873f4750b'
15/01/2012 22:18:56 : INFO  : Initialising fold library search
15/01/2012 22:19:03 : INFO  : Initialised search input
15/01/2012 22:19:07 : INFO  : Building Ensemble models
15/01/2012 22:19:13 : INFO  : Building hh.d1vlpa1.model.1.pdb
15/01/2012 22:19:45 : INFO  : Building d1vlpa1.1.pdb
15/01/2012 22:20:14 : INFO  : Building d1us7b_.2.pdb
15/01/2012 22:20:44 : INFO  : Building c1us7B_.3.pdb
15/01/2012 22:21:13 : INFO  : Building c2puyA_.4.pdb
15/01/2012 22:21:43 : INFO  : Building d2f7fa2.5.pdb
15/01/2012 22:22:12 : INFO  : Building d1k0ga_.6.pdb
15/01/2012 22:22:41 : INFO  : Building d1ybea2.7.pdb
15/01/2012 22:23:08 : INFO  : Building d1i7qa_.8.pdb
15/01/2012 22:23:36 : INFO  : Building d1i1qa_.9.pdb
15/01/2012 22:24:06 : INFO  : Building c1vlpA_.10.pdb
15/01/2012 22:24:32 : INFO  : Building d1j96a_.11.pdb
15/01/2012 22:24:58 : INFO  : Building d1weqa_.12.pdb
15/01/2012 22:25:25 : INFO  : Building d1q5ma_.13.pdb
15/01/2012 22:25:52 : INFO  : Building d1zbdb_.14.pdb
15/01/2012 22:26:19 : INFO  : Building d1yira2.15.pdb
15/01/2012 22:26:47 : INFO  : Building d1ah4a_.16.pdb
15/01/2012 22:27:15 : INFO  : Building c3o37D_.17.pdb
15/01/2012 22:27:43 : INFO  : Building d2alra_.18.pdb
15/01/2012 22:28:13 : INFO  : Building d1hqta_.19.pdb
15/01/2012 22:28:41 : INFO  : Building d3ctaa2.20.pdb
15/01/2012 22:29:39 : INFO  : Finished HH model building
15/01/2012 22:29:42 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 22:31:12 : INFO  : html domain output complete ID '6065ac5873f4750b'
15/01/2012 22:40:12 : INFO  : Run end  : Sun Jan 15 22:40:10 GMT 2012
