PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1at3a_

Fold library id	Fold	Superfamily	Family
d1at3a_	Herpes virus serine proteinase, assemblin	Herpes virus serine proteinase, assemblin	Herpes virus serine proteinase, assemblin

Links to external resources
Added to library: Tue Mar 16 12:36:36 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R A V P I Y V A G F L A L Y D S G D P G E L A L D P D T V R A A L P P E N P L P I N V D H R A R C E V G R V L A V V N D P R G P F F V G L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T T T
T T
S
S S
T T
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A C V Q L E R V L E T A A S A A I L S R E E R L L Y L I T N Y L P S V S L S T K P D R T L F A H V A L C A I G R R L G T I V T Y D T S L D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S
S S T T
B
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A I A P F R H L D P A T R E G V R R E A A E A E L A L A G R T W A P G V E A L T H T L L S T A V N N M M L R D R W S L V A E R R R Q A G I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B
S
T T T
T T T T
S
T T B

. . . . . . .

Sequence G H T Y L Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	A	V	P	I	Y	V	A	G	F	L	A	L	Y	D	S	G	D	P	G	E	L	A	L	D	P	D	T	V	R	A	A	L	P	P	E	N	P	L	P	I	N	V	D	H	R	A	R	C	E	V	G	R	V	L	A	V	V	N	D	P	R	G	P	F	F	V	G	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S			T	T	S				T	T	T									T	T		S		S	S							T	T		T	T													T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	C	V	Q	L	E	R	V	L	E	T	A	A	S	A	A	I	L	S	R	E	E	R	L	L	Y	L	I	T	N	Y	L	P	S	V	S	L	S	T	K	P	D	R	T	L	F	A	H	V	A	L	C	A	I	G	R	R	L	G	T	I	V	T	Y	D	T	S	L	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S												S											T	T									S	S		S	S	T	T		B					S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	I	A	P	F	R	H	L	D	P	A	T	R	E	G	V	R	R	E	A	A	E	A	E	L	A	L	A	G	R	T	W	A	P	G	V	E	A	L	T	H	T	L	L	S	T	A	V	N	N	M	M	L	R	D	R	W	S	L	V	A	E	R	R	R	Q	A	G	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	B		S																				T	T	T																				T	T	T	T		S													T	T	B
	.	.	.	.	.	.	.
Sequence	G	H	T	Y	L	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		S	S