PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4a1cV_

Fold library id	PDB Header	Molecule	Title
c4a1cV_	PDB header: ribosome	Chain: V: PDB Molecule: 60s ribosomal protein l7;	PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.

Links to external resources
Added to library: Sat Dec 3 18:05:55 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P E N V Q K K L A R D E K L R K A K A E Q R K A S S A Q M K Q R K A E W I S K A Q K Y A A E Y E A A E K K I V D E K R K A R K T G A F Y V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A E A K V A F A I R I R G V N Q L H P D V K R V L R L F R L R Q L H N G A F F R V N K A S L N M I K R V L P F I T F G Y P T R N T I S K L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
T T
S T T
T T G G G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y K R G F A K V N G Q R I P L T D N T I V E K S L G K F G I T C V E D L I H E I T T V G P H F K E A N N F L W P F K L D T P R G G F R N K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S G G G T
S T
S
B
S S
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . .

Sequence H A Y H Q G G D W G N R E V Y I N D L V K A M L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B G G G T
B
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	E	N	V	Q	K	K	L	A	R	D	E	K	L	R	K	A	K	A	E	Q	R	K	A	S	S	A	Q	M	K	Q	R	K	A	E	W	I	S	K	A	Q	K	Y	A	A	E	Y	E	A	A	E	K	K	I	V	D	E	K	R	K	A	R	K	T	G	A	F	Y	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																																	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	E	A	K	V	A	F	A	I	R	I	R	G	V	N	Q	L	H	P	D	V	K	R	V	L	R	L	F	R	L	R	Q	L	H	N	G	A	F	F	R	V	N	K	A	S	L	N	M	I	K	R	V	L	P	F	I	T	F	G	Y	P	T	R	N	T	I	S	K	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S		S	S	S												T	T			S	T	T														T	T	G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	K	R	G	F	A	K	V	N	G	Q	R	I	P	L	T	D	N	T	I	V	E	K	S	L	G	K	F	G	I	T	C	V	E	D	L	I	H	E	I	T	T	V	G	P	H	F	K	E	A	N	N	F	L	W	P	F	K	L	D	T	P	R	G	G	F	R	N	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S						T	T								S								G	G	G	T			S											T		S									B									S	S			S		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence	H	A	Y	H	Q	G	G	D	W	G	N	R	E	V	Y	I	N	D	L	V	K	A	M	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B	G	G	G	T			B				T	T	T