PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1o6ea_

Fold library id	Fold	Superfamily	Family
d1o6ea_	Herpes virus serine proteinase, assemblin	Herpes virus serine proteinase, assemblin	Herpes virus serine proteinase, assemblin

Links to external resources
Added to library: Tue Mar 16 13:09:51 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A P S V Y V C G F V E R P D A P P K D A C L H L D P L T V K S Q L P L K K P L P L T V E H L P D A P V G S V F G L Y Q S S A G L F S A A S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S T T
S
S S
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T S G D F L S L L D S I Y H D C D I A Q S Q R L P L P R E P K V E A L H A W L P S L S L A S L H P D I P Q T T A D G G K L S F F D H V S I C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S
S S
S
S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A L G R R R G T T A V Y G T D L A W V L K H F S D L E P S I A A Q I E N D A N A A K R H P L P L T K L I A K A I D A G F L R N R V E T L R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S S S
S
T
T T S
T
T T S
S S

. . . . . . . . . 220 . . . . .

Sequence D R G V A N I P A E S Y L K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	P	S	V	Y	V	C	G	F	V	E	R	P	D	A	P	P	K	D	A	C	L	H	L	D	P	L	T	V	K	S	Q	L	P	L	K	K	P	L	P	L	T	V	E	H	L	P	D	A	P	V	G	S	V	F	G	L	Y	Q	S	S	A	G	L	F	S	A	A	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	S			S	S	S	T	T												S		S	S							T	T																S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	S	G	D	F	L	S	L	L	D	S	I	Y	H	D	C	D	I	A	Q	S	Q	R	L	P	L	P	R	E	P	K	V	E	A	L	H	A	W	L	P	S	L	S	L	A	S	L	H	P	D	I	P	Q	T	T	A	D	G	G	K	L	S	F	F	D	H	V	S	I	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T							T	T						S		S	S															S											S	S						S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	L	G	R	R	R	G	T	T	A	V	Y	G	T	D	L	A	W	V	L	K	H	F	S	D	L	E	P	S	I	A	A	Q	I	E	N	D	A	N	A	A	K	R	H	P	L	P	L	T	K	L	I	A	K	A	I	D	A	G	F	L	R	N	R	V	E	T	L	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		S	S	S	S							S								T		T	T	S																T																T	T	S		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence	D	R	G	V	A	N	I	P	A	E	S	Y	L	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T			S	S	S	S