Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	N	I	I	R	T	P	E	T	H	P	L	T	W	R	L	R	D	D	K	Q	P	V	W	L	D	E	Y	R	S	K	N	G	Y	E	G	A	R	K	A	L	T	G	L	S	P	D	E	I	V	N	Q	V	K	D	A	G	L	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	R	G	G	A	G	F	S	T	G	L	K	W	S	L	M	P	K	D	E	S	M	N	I	R	Y	L	L	C	N	A	D	E	M	E	P	G	T	Y	K	D	R	L	L	M	E	Q	L	P	H	L	L	V	E	G	M	L	I	S	A
Secondary structure
SS confidence
Disorder																			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	A	L	K	A	Y	R	G	Y	I	F	L	R	G	E	Y	I	E	A	A	V	N	L	R	R	A	I	A	E	A	T	E	A	G	L	L	G	K	N	I	M	G	T	G	F	D	F	E	L	F	V	H	T	G	A	G	R	Y	I	C
Secondary structure
SS confidence
Disorder																																										?	?	?											?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	E	E	T	A	L	I	N	S	L	E	G	R	R	A	N	P	R	S	K	P	P	F	P	A	T	S	G	A	W	G	K	P	T	C	V	N	N	V	E	T	L	C	N	V	P	A	I	L	A	N	G	V	E	W	Y	Q	N	I	S
Secondary structure
SS confidence
Disorder																		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	S	K	D	A	G	T	K	L	M	G	F	S	G	R	V	K	N	P	G	L	W	E	L	P	F	G	T	T	A	R	E	I	L	E	D	Y	A	G	G	M	R	D	G	L	K	F	K	A	W	Q	P	G	G	A	G	T	D	F	L
Secondary structure
SS confidence
Disorder		?																																																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	E	A	H	L	D	L	P	M	E	F	E	S	I	G	K	A	G	S	R	L	G	T	A	L	A	M	A	V	D	H	E	I	N	M	V	S	L	V	R	N	L	E	E	F	F	A	R	E	S	C	G	W	C	T	P	C	R	D	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	P	W	S	V	K	I	L	R	A	L	E	R	G	E	G	Q	P	G	D	I	E	T	L	E	Q	L	C	R	F	L	G	P	G	K	T	F	C	A	H	A	P	G	A	V	E	P	L	Q	S	A	I	K	Y	F	R	E	E	F	E
Secondary structure
SS confidence
Disorder															?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Sequence		A	G	I	K	Q	P	F	S	N	T	H	L	I	N	G	I	Q	P	N	L	L	K	E	R	W
Secondary structure
SS confidence
Disorder								?		?										?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2fug chain A Region: 7 - 437 Aligned: 426 Modelled: 431 Confidence: 100.0% Identity: 46% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 2fug chain 1 domain 2 Region: 7 - 246 Aligned: 239 Modelled: 240 Confidence: 100.0% Identity: 54% Fold: Nqo1 FMN-binding domain-like Superfamily: Nqo1 FMN-binding domain-like Family: Nqo1 FMN-binding domain-like Phyre2 PDB 2fug chain 1 domain 1 Region: 333 - 437 Aligned: 103 Modelled: 105 Confidence: 100.0% Identity: 32% Fold: Bromodomain-like Superfamily: Nqo1C-terminal domain-like Family: Nqo1C-terminal domain-like Phyre2 PDB 2fug chain 1 domain 3 Region: 248 - 331 Aligned: 82 Modelled: 84 Confidence: 99.9% Identity: 43% Fold: beta-Grasp (ubiquitin-like) Superfamily: Nqo1 middle domain-like Family: Nqo1 middle domain-like Phyre2 PDB 2w8i chain G Region: 247 - 292 Aligned: 45 Modelled: 46 Confidence: 93.2% Identity: 18% PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. Phyre2 PDB 2j58 chain G Region: 247 - 292 Aligned: 45 Modelled: 46 Confidence: 91.9% Identity: 18% PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza Phyre2 PDB 1c4c chain A Region: 262 - 357 Aligned: 90 Modelled: 90 Confidence: 78.1% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum Phyre2 PDB 3p42 chain D Region: 244 - 292 Aligned: 48 Modelled: 46 Confidence: 65.8% Identity: 13% PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon Phyre2 PDB 2bs2 chain B domain 1 Region: 340 - 419 Aligned: 80 Modelled: 80 Confidence: 46.1% Identity: 20% Fold: Globin-like Superfamily: alpha-helical ferredoxin Family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain Phyre2 PDB 3swr chain A Region: 346 - 359 Aligned: 14 Modelled: 14 Confidence: 44.3% Identity: 36% PDB header:transferase Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1; PDBTitle: structure of human dnmt1 (601-1600) in complex with sinefungin Phyre2 PDB 2b76 chain N Region: 343 - 422 Aligned: 80 Modelled: 80 Confidence: 43.9% Identity: 16% PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation Phyre2 PDB 2bs2 chain E Region: 340 - 419 Aligned: 80 Modelled: 80 Confidence: 42.1% Identity: 20% PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes Phyre2 PDB 1kf6 chain B domain 1 Region: 341 - 424 Aligned: 84 Modelled: 84 Confidence: 41.3% Identity: 17% Fold: Globin-like Superfamily: alpha-helical ferredoxin Family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain Phyre2 PDB 3bqq chain B Region: 361 - 436 Aligned: 67 Modelled: 76 Confidence: 37.7% Identity: 7% PDB header:lipid binding protein Chain: B: PDB Molecule:proactivator polypeptide; PDBTitle: crystal structure of human saposin d (triclinic) Phyre2 PDB 1ffu chain A Region: 341 - 420 Aligned: 69 Modelled: 80 Confidence: 36.7% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor Phyre2 PDB 2h89 chain B Region: 341 - 424 Aligned: 83 Modelled: 84 Confidence: 36.0% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound Phyre2 PDB 3bl5 chain E Region: 350 - 370 Aligned: 21 Modelled: 21 Confidence: 35.9% Identity: 19% PDB header:hydrolase Chain: E: PDB Molecule:queuosine biosynthesis protein quec; PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis Phyre2 PDB 1nkl chain A Region: 361 - 436 Aligned: 66 Modelled: 76 Confidence: 35.3% Identity: 12% Fold: Saposin-like Superfamily: Saposin Family: NKL-like Phyre2 PDB 3pt6 chain B Region: 346 - 359 Aligned: 14 Modelled: 14 Confidence: 32.4% Identity: 36% PDB header:transferase/dna Chain: B: PDB Molecule:dna (cytosine-5)-methyltransferase 1; PDBTitle: crystal structure of mouse dnmt1(650-1602) in complex with dna Phyre2 PDB 1zxi chain A domain 1 Region: 341 - 418 Aligned: 67 Modelled: 78 Confidence: 28.2% Identity: 21% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 1 c2fugA_ 2 d2fug12 3 d2fug11 4 d2fug13 5 c2w8iG_ 6 c2j58G_ 7 c1c4cA_ 8 c3p42D_ 9 d2bs2b1 10 c3swrA_ 11 c2b76N_ 12 c2bs2E_ 13 d1kf6b1 14 c3bqqB_ 15 c1ffuA_ 16 c2h89B_ 17 c3bl5E_ 18 d1nkla_ 19 c3pt6B_ 20 d1zxia1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2fugA_ 100.0 46 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 2 d2fug12 100.0 54 Fold:Nqo1 FMN-binding domain-like Superfamily:Nqo1 FMN-binding domain-like Family:Nqo1 FMN-binding domain-like 3 d2fug11 100.0 32 Fold:Bromodomain-like Superfamily:Nqo1C-terminal domain-like Family:Nqo1C-terminal domain-like 4 d2fug13 99.9 43 Fold:beta-Grasp (ubiquitin-like) Superfamily:Nqo1 middle domain-like Family:Nqo1 middle domain-like 5 c2w8iG_ 93.2 18 PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. 6 c2j58G_ 91.9 18 PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza 7 c1c4cA_ 78.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 8 c3p42D_ 65.8 13 PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon 9 d2bs2b1 46.1 20 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 10 c3swrA_ 44.3 36 PDB header:transferase Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1; PDBTitle: structure of human dnmt1 (601-1600) in complex with sinefungin 11 c2b76N_ 43.9 16 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 12 c2bs2E_ 42.1 20 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 13 d1kf6b1 41.3 17 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 14 c3bqqB_ 37.7 7 PDB header:lipid binding protein Chain: B: PDB Molecule:proactivator polypeptide; PDBTitle: crystal structure of human saposin d (triclinic) 15 c1ffuA_ 36.7 17 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 16 c2h89B_ 36.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 17 c3bl5E_ 35.9 19 PDB header:hydrolase Chain: E: PDB Molecule:queuosine biosynthesis protein quec; PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis 18 d1nkla_ 35.3 12 Fold:Saposin-like Superfamily:Saposin Family:NKL-like 19 c3pt6B_ 32.4 36 PDB header:transferase/dna Chain: B: PDB Molecule:dna (cytosine-5)-methyltransferase 1; PDBTitle: crystal structure of mouse dnmt1(650-1602) in complex with dna 20 d1zxia1 28.2 21 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 21 d1of9a_ not modelled 28.2 13 Fold:Saposin-like Superfamily:Saposin Family:Ameobapore A 22 c3thdD_ not modelled 25.2 26 PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin 23 d1n62a1 not modelled 24.3 20 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 24 c3cf4A_ not modelled 23.2 23 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 25 c1dgjA_ not modelled 22.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774 26 c3d3aA_ not modelled 22.3 26 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron 27 c1w59B_ not modelled 21.7 27 PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii) 28 c3b9jI_ not modelled 21.6 22 PDB header:oxidoreductase Chain: I: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 29 d2gtga1 not modelled 20.0 12 Fold:Saposin-like Superfamily:Saposin Family:NKL-like 30 d1nekb1 not modelled 19.9 14 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 31 d1t3qa1 not modelled 18.7 21 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 32 d1v97a1 not modelled 18.4 22 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 33 c2he3A_ not modelled 18.0 9 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 2; PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2) 34 d1o8xa_ not modelled 18.0 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 35 d1z6na1 not modelled 17.9 28 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 36 c1n60D_ not modelled 17.7 20 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 37 c3eubJ_ not modelled 16.8 22 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 38 d1ujsa_ not modelled 16.1 26 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 39 d2pg3a1 not modelled 16.1 44 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 40 d1deca_ not modelled 16.1 36 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Hirudin-like 41 c1nekB_ not modelled 15.9 18 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 42 d1l9la_ not modelled 15.6 6 Fold:Saposin-like Superfamily:Saposin Family:NKL-like 43 c1rm6F_ not modelled 15.5 20 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 44 d1uufa1 not modelled 15.1 55 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 45 d1i5ga_ not modelled 15.0 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 46 d1jqoa_ not modelled 14.8 35 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 47 c1jqoA_ not modelled 14.8 35 PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize 48 c3nsjA_ not modelled 14.6 24 PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin 49 d1rm6c1 not modelled 14.2 18 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 50 c3o2qB_ not modelled 13.6 20 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 51 c3l23A_ not modelled 13.6 10 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution 52 c2w3rG_ not modelled 13.4 15 PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine 53 d1ejba_ not modelled 13.0 24 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 54 c2ds8A_ not modelled 12.9 35 PDB header:metal binding protein, protein binding Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit PDBTitle: structure of the zbd-xb complex 55 c3mk3L_ not modelled 12.9 21 PDB header:transferase Chain: L: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase; PDBTitle: crystal structure of lumazine synthase from salmonella typhimurium lt2 56 c3qmhA_ not modelled 12.8 64 PDB header:dna binding protein/dna Chain: A: PDB Molecule:cpg-binding protein; PDBTitle: structural basis of selective binding of non-methylated cpg islands2 (dna-tcga) by the cxxc domain of cfp1 57 d1c2ya_ not modelled 12.7 11 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 58 c2jyiA_ not modelled 12.7 64 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein hrx; PDBTitle: solution structure of mll cxxc domain 59 c3fdfA_ not modelled 12.5 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fr253; PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253. 60 c3ogrA_ not modelled 12.1 27 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose 61 d1ffva1 not modelled 11.8 17 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 62 d1cdoa1 not modelled 11.8 36 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 63 c1t3qD_ not modelled 11.7 21 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 64 c2l3xA_ not modelled 11.7 21 PDB header:protein binding Chain: A: PDB Molecule:ablim2 protein; PDBTitle: villin head piece domain of human ablim2 65 d1rvv1_ not modelled 11.7 17 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 66 c2bm0A_ not modelled 11.1 15 PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a 67 c2kvgA_ not modelled 11.0 26 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 68 d2fa8a1 not modelled 11.0 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 69 c3hrdH_ not modelled 10.7 22 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 70 c3p04B_ not modelled 10.6 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 71 c2j2sA_ not modelled 10.6 64 PDB header:transcription regulation Chain: A: PDB Molecule:zinc finger protein hrx; PDBTitle: solution structure of the nonmethyl-cpg-binding cxxc domain2 of the leukaemia-associated mll histone methyltransferase 72 d1yu5x1 not modelled 10.3 13 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 73 c2ojlB_ not modelled 10.2 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68. 74 c1ovxB_ not modelled 10.2 35 PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer 75 d2ds5a1 not modelled 10.2 35 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain 76 d1nqua_ not modelled 10.2 15 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 77 d2vapa1 not modelled 10.1 26 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 78 c3o2sB_ not modelled 9.9 20 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72 complex 79 c2p0gB_ not modelled 9.7 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:selenoprotein w-related protein; PDBTitle: crystal structure of selenoprotein w-related protein from2 vibrio cholerae. northeast structural genomics target vcr75 80 c1xc6A_ not modelled 9.6 27 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: native structure of beta-galactosidase from penicillium sp. in complex2 with galactose 81 d1mmca_ not modelled 9.6 0 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Plant lectins/antimicrobial peptides Family:Antimicrobial peptide 2, AC-AMP2 82 c1ogpD_ not modelled 9.3 20 PDB header:oxidoreductase Chain: D: PDB Molecule:sulfite oxidase; PDBTitle: the crystal structure of plant sulfite oxidase provides2 insight into sulfite oxidation in plants and animals 83 d1lbua2 not modelled 8.9 12 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:Muramoyl-pentapeptide carboxypeptidase 84 d1c41a_ not modelled 8.8 17 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 85 d1v9wa_ not modelled 8.8 28 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like 86 d1o73a_ not modelled 8.7 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 87 c2obkE_ not modelled 8.5 20 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain; PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6. 88 c3p04A_ not modelled 8.5 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 89 d1qzpa_ not modelled 8.5 18 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 90 c2h9gS_ not modelled 8.4 25 PDB header:immune system/apoptosis Chain: S: PDB Molecule:tumor necrosis factor receptor superfamily member 10b PDBTitle: crystal structure of phage derived fab bdf1 with human death receptor2 5 (dr5) 91 c3fkfC_ not modelled 8.4 13 PDB header:oxidoreductase Chain: C: PDB Molecule:thiol-disulfide oxidoreductase; PDBTitle: thiol-disulfide oxidoreductase from bacteroides fragilis nctc 9343 92 c1zr6A_ not modelled 8.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:glucooligosaccharide oxidase; PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation 93 c2obxH_ not modelled 8.1 15 PDB header:transferase Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 94 c3dexA_ not modelled 8.1 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sav_2001; PDBTitle: crystal structure of sav_2001 protein from streptomyces2 avermitilis, northeast structural genomics consortium3 target svr107. 95 c1zlgA_ not modelled 8.0 31 PDB header:hormone/growth factor Chain: A: PDB Molecule:anosmin 1; PDBTitle: solution structure of the extracellular matrix protein2 anosmin-1 96 d2fzwa1 not modelled 7.9 36 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 97 d1di0a_ not modelled 7.8 17 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 98 c3l0aA_ not modelled 7.8 50 PDB header:hydrolase Chain: A: PDB Molecule:putative exonuclease; PDBTitle: crystal structure of putative exonuclease (rer070207002219) from2 eubacterium rectale at 2.19 a resolution 99 d2f9wa1 not modelled 7.7 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0