Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77196
DateThu Jan 5 12:26:13 GMT 2012
Unique Job ID5a7be65cbccb238f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3rfzB_
Top template information
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
Confidence and coverage
Confidence:100.0% Coverage: 85%
753 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKGDTKIDLKRFSSQGYVE
Secondary structure 
SS confidence 
Disorder  ????????
???
?
?????????
?
????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PGKYNLQVQLNKQPLAEEYDIYWYAGEDDVSKSYACLTPELVAQFGLKEDVAKNLQWSHD
Secondary structure 
SS confidence 
Disorder  ?
?????
??????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  GKCLKPGQLEGVEIKADLSQSALVISLPQAYLEYTWPDWDPPSRWDDGISGIIADYSITA
Secondary structure 
SS confidence 
Disorder 
?????????
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  QTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNYQHTRSNDDDDEFGGDDTQKKWE
Secondary structure 
SS confidence 
Disorder 
??????????
?
?
????????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  WSRYYAWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGYAPDISGV
Secondary structure 
SS confidence 
Disorder 
?
?
????????
??????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  AHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEYDISTASM
Secondary structure 
SS confidence 
Disorder 
?
??
???
??
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  PYLTRPGQVRYKIMMGRPQEWGHHVEGGFFSGAEASWGIANGWSLYGGALGDENYQSAAL
Secondary structure 
SS confidence 
Disorder  ???????
????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  GVGRDLSTFGAVAFDVTHSHTKLDKDTAYGKGSLDGNSFRVSYSKDFDQLNSRVTFAGYR
Secondary structure 
SS confidence 
Disorder 
?
????????????????
?
?
??
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  FSEENFMTMSEYLDASDSEMVRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREEQ
Secondary structure 
SS confidence 
Disorder 
?
?
????????
???
??
?????????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  TNYNIMLSHYFNMGSIRNMSVSLTGYRYEYDNRADKGMYISLSMPWGDNSTVSYNGNYGS
Secondary structure 
SS confidence 
Disorder  ?
?
???
?????????
??
???
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  GTDSSQVGYFSRVDDATHYQLNIGTSDKHTSVDGYYSHDGSLAQVDLSANYHEGQYTSAG
Secondary structure 
SS confidence 
Disorder  ???
?????????
????????
??????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  LSLQGGATLTTHGGALHRTQNMGGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVN
Secondary structure 
SS confidence 
Disorder 
?
????
??
?
???????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  NYYRNQAYIDLNKLPENAEATQSVVQATLTEGAIGYRKFAVISGQKAMAVLRLQDGSHPP
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  FGAEVKNDNEQTVGLVDDDGSVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLL
Secondary structure 
SS confidence 
Disorder 
??
???????
Disorder confidence 
 
   .........850.........860.........870.........880.
Sequence  LPCQHKGNVAPVVPDDIKPVIQEQTQQVTPTDPPVSVSANQ
Secondary structure 
SS confidence 
Disorder 
?????????????????????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3rfz chain B

3D model

Region: 58 - 845
Aligned: 753
Modelled: 767
Confidence: 100.0%
Identity: 27%
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate

Phyre2

PDB 2vqi chain A

3D model

Region: 172 - 673
Aligned: 474
Modelled: 502
Confidence: 100.0%
Identity: 42%
PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore

Phyre2

PDB 3ohn chain A

3D model

Region: 171 - 667
Aligned: 458
Modelled: 482
Confidence: 100.0%
Identity: 27%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain

Phyre2

PDB 3bwu chain D domain 1

3D model

Region: 33 - 154
Aligned: 120
Modelled: 122
Confidence: 100.0%
Identity: 24%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1zdv chain A domain 1

3D model

Region: 56 - 171
Aligned: 114
Modelled: 116
Confidence: 100.0%
Identity: 24%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3fcg chain B

3D model

Region: 287 - 361
Aligned: 70
Modelled: 75
Confidence: 99.9%
Identity: 30%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher

Phyre2

PDB 1zdx chain A domain 1

3D model

Region: 56 - 157
Aligned: 100
Modelled: 102
Confidence: 99.9%
Identity: 21%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3l48 chain B

3D model

Region: 764 - 851
Aligned: 80
Modelled: 88
Confidence: 99.8%
Identity: 48%
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher

Phyre2

PDB 2xet chain B

3D model

Region: 766 - 843
Aligned: 78
Modelled: 78
Confidence: 99.8%
Identity: 27%
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly

Phyre2

PDB 3pe9 chain B

3D model

Region: 296 - 350
Aligned: 53
Modelled: 55
Confidence: 90.8%
Identity: 11%
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 2nsm chain A

3D model

Region: 767 - 842
Aligned: 75
Modelled: 76
Confidence: 90.2%
Identity: 9%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain

Phyre2

PDB 3pdg chain A

3D model

Region: 296 - 352
Aligned: 56
Modelled: 57
Confidence: 88.6%
Identity: 18%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1uwy chain A

3D model

Region: 765 - 880
Aligned: 95
Modelled: 101
Confidence: 86.9%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m

Phyre2

PDB 2x5p chain A

3D model

Region: 752 - 816
Aligned: 60
Modelled: 65
Confidence: 84.8%
Identity: 23%
PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b

Phyre2

PDB 1w0n chain A

3D model

Region: 271 - 349
Aligned: 79
Modelled: 79
Confidence: 84.4%
Identity: 11%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 36 carbohydrate binding module, CBM36

Phyre2

PDB 1h8l chain A domain 1

3D model

Region: 767 - 841
Aligned: 74
Modelled: 75
Confidence: 83.6%
Identity: 11%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 1uwy chain A domain 1

3D model

Region: 767 - 880
Aligned: 94
Modelled: 99
Confidence: 83.3%
Identity: 17%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 3mn8 chain A

3D model

Region: 767 - 816
Aligned: 48
Modelled: 50
Confidence: 82.9%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short

Phyre2

PDB 1h8l chain A

3D model

Region: 765 - 841
Aligned: 76
Modelled: 77
Confidence: 81.7%
Identity: 11%
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa

Phyre2

PDB 3pe9 chain D

3D model

Region: 296 - 350
Aligned: 53
Modelled: 55
Confidence: 80.6%
Identity: 11%
PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2
1
c3rfzB_
2
c2vqiA_
3
c3ohnA_
4
d3bwud1
5
d1zdva1
6
c3fcgB_
7
d1zdxa1
8
c3l48B_
9
c2xetB_
10
c3pe9B_
11
c2nsmA_
12
c3pdgA_
13
c1uwyA_
14
c2x5pA_
15
d1w0na_
16
d1h8la1
17
d1uwya1
18
c3mn8A_
19
c1h8lA_
20
c3pe9D_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
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49
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51
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53
54
55
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57
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63
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73
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rfzB_
100.0 27 PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
2c2vqiA_
100.0 42 PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
3c3ohnA_
100.0 27 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
4d3bwud1
100.0 24 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
5d1zdva1
100.0 24 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
6c3fcgB_
99.9 30 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
7d1zdxa1
99.9 21 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
8c3l48B_
99.8 48 PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
9c2xetB_
99.8 27 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
10c3pe9B_
90.8 11 PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
11c2nsmA_
90.2 9 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
12c3pdgA_
88.6 18 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
13c1uwyA_
86.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
14c2x5pA_
84.8 23 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
15d1w0na_
84.4 11 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 36 carbohydrate binding module, CBM36
16d1h8la1
83.6 11 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
17d1uwya1
83.3 17 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
18c3mn8A_
82.9 15 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
19c1h8lA_
81.7 11 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
20c3pe9D_
80.6 11 PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
21c1d2pA_
not modelled 79.4 16 PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus
22c1u00A_
not modelled 78.6 13 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
23c3dpqE_
not modelled 75.2 14 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
24c3n8eA_
not modelled 74.5 19 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
25c2op6A_
not modelled 73.7 13 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
26c3pe9A_
not modelled 73.3 14 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
27c3pe9C_
not modelled 73.3 14 PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
28c3e8vA_
not modelled 72.9 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis
29d1v8ha1
not modelled 72.6 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like
30c1bprA_
not modelled 71.1 13 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
31c2r32A_
not modelled 63.4 26 PDB header:immune system
Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand
PDBTitle: crystal structure of human gitrl variant
32d1u00a2
not modelled 62.0 15 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
33c3d33B_
not modelled 60.5 14 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
34c3dqgC_
not modelled 60.2 19 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
35d1yuwa1
not modelled 60.0 13 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
36d1dkza2
not modelled 55.1 14 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
37c3k1dA_
not modelled 49.9 10 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
38c2oxgE_
not modelled 47.0 17 PDB header:transport protein
Chain: E: PDB Molecule:soxz protein;
PDBTitle: the soxyz complex of paracoccus pantotrophus
39d2ag4a1
not modelled 41.4 13 Fold:Ganglioside M2 (gm2) activator
Superfamily:Ganglioside M2 (gm2) activator
Family:Ganglioside M2 (gm2) activator
40c2vnvC_
not modelled 36.9 10 PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution
41d1ci3m2
not modelled 31.7 18 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
42c3b9eA_
not modelled 31.1 9 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
43d1uzva_
not modelled 28.3 13 Fold:Calcium-mediated lectin
Superfamily:Calcium-mediated lectin
Family:Calcium-mediated lectin
44d2vzsa4
not modelled 28.1 14 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
45c3girA_
not modelled 27.2 15 PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of glycine cleavage system2 aminomethyltransferase t from bartonella henselae
46c1pj6A_
not modelled 27.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
47c3acgA_
not modelled 26.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:beta-1,4-endoglucanase;
PDBTitle: crystal structure of carbohydrate-binding module family 282 from clostridium josui cel5a in complex with cellobiose
48d2dj4a1
not modelled 25.4 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
49d1e2wa2
not modelled 24.7 16 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
50c3rghA_
not modelled 24.0 33 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
51c3brzA_
not modelled 23.9 16 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
52d2e9ia1
not modelled 23.4 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
53c3iswA_
not modelled 23.3 33 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
54d1wlha1
not modelled 23.2 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
55d2bp3a1
not modelled 22.2 38 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
56d2vmha1
not modelled 22.0 7 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:NPCBM-like
57c3gxxB_
not modelled 21.6 24 PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt6;
PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b
58c3hizB_
not modelled 20.7 18 PDB header:transferase/oncoprotein
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit
PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha
59d2je8a4
not modelled 20.4 11 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
60c1ug9A_
not modelled 19.2 19 PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
61d1gyva_
not modelled 19.0 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:gamma-adaptin C-terminal appendage domain-like
62d2a9da1
not modelled 18.8 24 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Molybdenum-containing oxidoreductases-like dimerisation domain
63c2ww8A_
not modelled 18.7 11 PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
64c2l1tA_
not modelled 18.1 27 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the n-terminal domain of np_954075.1
65d1uwwa_
not modelled 18.1 15 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 28 carbohydrate binding module, CBM28
66c2brqB_
not modelled 17.9 33 PDB header:structural protein
Chain: B: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
67c2xr4A_
not modelled 17.9 21 PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: c-terminal domain of bc2l-c lectin from burkholderia cenocepacia
68c2bpbA_
not modelled 17.6 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit a;
PDBTitle: sulfite dehydrogenase from starkeya novella
69c2e9jA_
not modelled 17.5 20 PDB header:structural protein
Chain: A: PDB Molecule:filamin-b;
PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b
70d1edqa1
not modelled 17.1 9 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
71c2ds4A_
not modelled 16.9 33 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
72c2vzvB_
not modelled 16.8 18 PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan
73c1worA_
not modelled 16.7 19 PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of t-protein of the glycine cleavage2 system
74d2dmba1
not modelled 16.4 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
75d1qfha2
not modelled 16.2 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
76c3dnhB_
not modelled 16.0 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
77d2dica1
not modelled 15.8 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
78d2j3sa2
not modelled 15.8 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
79d2dmca1
not modelled 15.7 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
80d2di9a1
not modelled 15.6 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
81d2burb1
not modelled 15.5 30 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
82d2d7ma1
not modelled 15.4 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
83d1qfha1
not modelled 15.3 38 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
84d2w0pa1
not modelled 15.1 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
85d1v05a_
not modelled 15.1 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
86d2diba1
not modelled 15.0 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
87c2jf1A_
not modelled 14.9 33 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
88d2di8a1
not modelled 14.9 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
89d2p0la1
not modelled 14.8 16 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:LplA-like
90c3iswB_
not modelled 14.7 33 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
91c2brqA_
not modelled 14.7 33 PDB header:structural protein
Chain: A: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
92d2diaa1
not modelled 14.4 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
93c2e8oA_
not modelled 14.4 13 PDB header:signaling protein
Chain: A: PDB Molecule:sam domain and hd domain-containing protein 1;
PDBTitle: solution structure of the n-terminal sam-domain of the sam2 domain and hd domain containing protein 1 (dendritic cell-3 derived ifng-induced protein) (dcip) (monocyte protein 5)4 (mop-5)
94c2w0pB_
not modelled 13.7 33 PDB header:cell adhesion
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide
95d2d7oa1
not modelled 13.7 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
96d2ns0a1
not modelled 13.4 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
97c2boiA_
not modelled 13.2 14 PDB header:lectin
Chain: A: PDB Molecule:cv-iil lectin;
PDBTitle: 1.1a structure of chromobacterium violaceum lectin cv2l in2 complex with alpha-methyl-fucoside
98d2d7pa1
not modelled 13.1 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
99c1ksrA_
not modelled 12.9 18 PDB header:actin binding protein
Chain: A: PDB Molecule:gelation factor;
PDBTitle: the repeating segments of the f-actin cross-linking2 gelation factor (abp-120) have an immunoglobulin fold, nmr,3 20 structures

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0