PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1d2pA_

Fold library id	PDB Header	Molecule	Title
c1d2pA_	PDB header: structural protein	Chain: A: PDB Molecule: collagen adhesin;	PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus

Links to external resources
Added to library: Tue Mar 16 13:57:00 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E T T S S I G E K V W D D K D N Q D G K R P E K V S V N L L A N G E K V K T L D V T S E T N W K Y E F K D L P K Y D E G K K I E Y T V T E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T T
S T T G G G T T S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H V K D Y T T D I N G T T I T N K Y T P G E T S A T V T K N W D D N N N Q D G K R P T E I K V E L Y Q D G K A T G K T A I L N E S N N W T H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T S T T T T T S
S T T G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T W T G L D E K A K G Q Q V K Y T V E E L T K V K G Y T T H V D N N D M G N L I T T N K Y T P E T T S S I G E K V W D D K D N Q D G K R P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B S S S S B
S
T T
S
T T S
S T T T T T S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K V S V N L L A N G E K V K T L D V T S E T N W K Y E F K D L P K Y D E G K K I E Y T V T E D H V K D Y T T D I N G T T I T N K Y T P G E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G T S S T T
T T T T
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence S A T V T K N W D D N N N Q D G K R P T E I K V E L Y Q D G K A T G K T A I L N E S N N W T H T W T G L D E K A K G Q Q V K Y T V E E L T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G T T S
S T T T T T T T S T T
S

. . . . . . . . . 360 . . . . . . . . . 370 . . .

Sequence V K G Y T T H V D N N D M G N L I T T N K Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	T	T	S	S	I	G	E	K	V	W	D	D	K	D	N	Q	D	G	K	R	P	E	K	V	S	V	N	L	L	A	N	G	E	K	V	K	T	L	D	V	T	S	E	T	N	W	K	Y	E	F	K	D	L	P	K	Y	D	E	G	K	K	I	E	Y	T	V	T	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	T	T	T	T	T					S									T	T										G	G	G	T	T									S			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	V	K	D	Y	T	T	D	I	N	G	T	T	I	T	N	K	Y	T	P	G	E	T	S	A	T	V	T	K	N	W	D	D	N	N	N	Q	D	G	K	R	P	T	E	I	K	V	E	L	Y	Q	D	G	K	A	T	G	K	T	A	I	L	N	E	S	N	N	W	T	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T							T	T								T	T												S	T	T	T	T	T	S				S									T	T											G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	W	T	G	L	D	E	K	A	K	G	Q	Q	V	K	Y	T	V	E	E	L	T	K	V	K	G	Y	T	T	H	V	D	N	N	D	M	G	N	L	I	T	T	N	K	Y	T	P	E	T	T	S	S	I	G	E	K	V	W	D	D	K	D	N	Q	D	G	K	R	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	B	S	S	S	S	B									S			T	T								S		T	T	S																						S	T	T	T	T	T	S				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	V	S	V	N	L	L	A	N	G	E	K	V	K	T	L	D	V	T	S	E	T	N	W	K	Y	E	F	K	D	L	P	K	Y	D	E	G	K	K	I	E	Y	T	V	T	E	D	H	V	K	D	Y	T	T	D	I	N	G	T	T	I	T	N	K	Y	T	P	G	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T										G	G	G	T	S									S			T	T													T	T							T	T								T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	S	A	T	V	T	K	N	W	D	D	N	N	N	Q	D	G	K	R	P	T	E	I	K	V	E	L	Y	Q	D	G	K	A	T	G	K	T	A	I	L	N	E	S	N	N	W	T	H	T	W	T	G	L	D	E	K	A	K	G	Q	Q	V	K	Y	T	V	E	E	L	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	G	G	G	T	T	S				S									T	T											T	T	T	T	T									S			T	T											S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Sequence	V	K	G	Y	T	T	H	V	D	N	N	D	M	G	N	L	I	T	T	N	K	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T								S		G	G	G