Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76540
DateThu Jan 5 12:24:12 GMT 2012
Unique Job ID59ff555b3ae32e13

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3i6pF_
Top template information
PDB header:structural protein
Chain: F: PDB Molecule:ethanolamine utilization protein eutm;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutm
Confidence and coverage
Confidence:100.0% Coverage: 52%
87 residues ( 52% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
148 residues ( 89%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTLVVEGDLAACRAALDAG
Secondary structure 







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Disorder  ?????




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   .........70.........80.........90.........100.........110.........120
Sequence  CAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPDAPVIVAESADELLALLTS
Secondary structure 



























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Disorder 


























?????????????????????????????????
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   .........130.........140.........150.........160......
Sequence  VRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSRYRLKPH
Secondary structure 


















SS confidence 













































Disorder  ???????????????














???
????????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3i6p chain F

3D model

Region: 2 - 88
Aligned: 87
Modelled: 87
Confidence: 100.0%
Identity: 46%
PDB header:structural protein
Chain: F: PDB Molecule:ethanolamine utilization protein eutm;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutm

Phyre2

PDB 3ngk chain A

3D model

Region: 3 - 89
Aligned: 87
Modelled: 87
Confidence: 100.0%
Identity: 45%
PDB header:unknown function
Chain: A: PDB Molecule:propanediol utilization protein pdua;
PDBTitle: pdua from salmonella enterica typhimurium

Phyre2

PDB 2a10 chain A domain 1

3D model

Region: 3 - 99
Aligned: 97
Modelled: 97
Confidence: 100.0%
Identity: 29%
Fold: Ferredoxin-like
Superfamily: CcmK-like
Family: CcmK-like

Phyre2

PDB 2a1b chain A domain 1

3D model

Region: 2 - 100
Aligned: 99
Modelled: 99
Confidence: 100.0%
Identity: 34%
Fold: Ferredoxin-like
Superfamily: CcmK-like
Family: CcmK-like

Phyre2

PDB 2ewh chain A domain 1

3D model

Region: 3 - 91
Aligned: 89
Modelled: 89
Confidence: 100.0%
Identity: 37%
Fold: Ferredoxin-like
Superfamily: CcmK-like
Family: CcmK-like

Phyre2

PDB 3nwg chain A

3D model

Region: 3 - 95
Aligned: 91
Modelled: 93
Confidence: 100.0%
Identity: 29%
PDB header:structural protein
Chain: A: PDB Molecule:microcompartments protein;
PDBTitle: the crystal structure of a microcomparments protein from2 desulfitobacterium hafniense dcb

Phyre2

PDB 3n79 chain A

3D model

Region: 2 - 87
Aligned: 86
Modelled: 86
Confidence: 100.0%
Identity: 28%
PDB header:electron transport
Chain: A: PDB Molecule:pdut;
PDBTitle: pdut c38s mutant from salmonella enterica typhimurium

Phyre2

PDB 3i71 chain B

3D model

Region: 108 - 165
Aligned: 58
Modelled: 58
Confidence: 99.9%
Identity: 100%
PDB header:unknown function
Chain: B: PDB Molecule:ethanolamine utilization protein eutk;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutk c-2 terminal domain

Phyre2

PDB 3io0 chain A

3D model

Region: 2 - 80
Aligned: 79
Modelled: 79
Confidence: 99.8%
Identity: 22%
PDB header:structural protein
Chain: A: PDB Molecule:etub protein;
PDBTitle: crystal structure of etub from clostridium kluyveri

Phyre2

PDB 3i82 chain A

3D model

Region: 3 - 93
Aligned: 91
Modelled: 91
Confidence: 99.6%
Identity: 23%
PDB header:structural protein
Chain: A: PDB Molecule:ethanolamine utilization protein eutl;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutl closed2 form

Phyre2

PDB 3cgi chain D

3D model

Region: 3 - 67
Aligned: 62
Modelled: 65
Confidence: 98.2%
Identity: 24%
PDB header:unknown function
Chain: D: PDB Molecule:propanediol utilization protein pduu;
PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment

Phyre2

PDB 3ia0 chain C

3D model

Region: 4 - 67
Aligned: 61
Modelled: 64
Confidence: 98.1%
Identity: 28%
PDB header:structural protein
Chain: C: PDB Molecule:ethanolamine utilization protein euts;
PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant

Phyre2

PDB 3f56 chain F

3D model

Region: 3 - 70
Aligned: 66
Modelled: 65
Confidence: 96.2%
Identity: 23%
PDB header:structural protein
Chain: F: PDB Molecule:csos1d;
PDBTitle: the structure of a previously undetected carboxysome shell2 protein: csos1d from prochlorococcus marinus med4

Phyre2

PDB 1mkm chain A domain 1

3D model

Region: 109 - 165
Aligned: 57
Modelled: 57
Confidence: 83.9%
Identity: 25%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Transcriptional regulator IclR, N-terminal domain

Phyre2

PDB 2g7u chain B

3D model

Region: 103 - 165
Aligned: 63
Modelled: 63
Confidence: 82.7%
Identity: 24%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1

Phyre2

PDB 3r4k chain D

3D model

Region: 109 - 165
Aligned: 57
Modelled: 57
Confidence: 81.3%
Identity: 21%
PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution

Phyre2

PDB 2o0y chain B

3D model

Region: 109 - 165
Aligned: 57
Modelled: 57
Confidence: 74.3%
Identity: 16%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.

Phyre2

PDB 2xro chain E

3D model

Region: 109 - 165
Aligned: 57
Modelled: 57
Confidence: 64.9%
Identity: 19%
PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator

Phyre2

PDB 1j5y chain A domain 1

3D model

Region: 109 - 165
Aligned: 57
Modelled: 57
Confidence: 58.2%
Identity: 14%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Biotin repressor-like

Phyre2

PDB 1mkm chain A

3D model

Region: 109 - 165
Aligned: 57
Modelled: 57
Confidence: 56.7%
Identity: 21%
PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr

Phyre2
1

c3i6pF_
2

c3ngkA_
3

d2a10a1
4

d2a1ba1
5

d2ewha1
6

c3nwgA_
7

c3n79A_
8

c3i71B_
9

c3io0A_
10

c3i82A_
11

c3cgiD_
12

c3ia0c_
13

c3f56F_
14

d1mkma1
15

c2g7uB_
16

c3r4kD_
17

c2o0yB_
18

c2xroE_
19

d1j5ya1
20

c1mkmA_
21



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73






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3i6pF_



100.0 46 PDB header:structural protein
Chain: F: PDB Molecule:ethanolamine utilization protein eutm;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutm
2c3ngkA_



100.0 45 PDB header:unknown function
Chain: A: PDB Molecule:propanediol utilization protein pdua;
PDBTitle: pdua from salmonella enterica typhimurium
3d2a10a1



100.0 29 Fold:Ferredoxin-like
Superfamily:CcmK-like
Family:CcmK-like
4d2a1ba1



100.0 34 Fold:Ferredoxin-like
Superfamily:CcmK-like
Family:CcmK-like
5d2ewha1



100.0 37 Fold:Ferredoxin-like
Superfamily:CcmK-like
Family:CcmK-like
6c3nwgA_



100.0 29 PDB header:structural protein
Chain: A: PDB Molecule:microcompartments protein;
PDBTitle: the crystal structure of a microcomparments protein from2 desulfitobacterium hafniense dcb
7c3n79A_



100.0 28 PDB header:electron transport
Chain: A: PDB Molecule:pdut;
PDBTitle: pdut c38s mutant from salmonella enterica typhimurium
8c3i71B_



99.9 100 PDB header:unknown function
Chain: B: PDB Molecule:ethanolamine utilization protein eutk;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutk c-2 terminal domain
9c3io0A_



99.8 22 PDB header:structural protein
Chain: A: PDB Molecule:etub protein;
PDBTitle: crystal structure of etub from clostridium kluyveri
10c3i82A_



99.6 23 PDB header:structural protein
Chain: A: PDB Molecule:ethanolamine utilization protein eutl;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutl closed2 form
11c3cgiD_



98.2 24 PDB header:unknown function
Chain: D: PDB Molecule:propanediol utilization protein pduu;
PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment
12c3ia0c_



98.1 28 PDB header:structural protein
Chain: C: PDB Molecule:ethanolamine utilization protein euts;
PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant
13c3f56F_



96.2 23 PDB header:structural protein
Chain: F: PDB Molecule:csos1d;
PDBTitle: the structure of a previously undetected carboxysome shell2 protein: csos1d from prochlorococcus marinus med4
14d1mkma1



83.9 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
15c2g7uB_



82.7 24 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
16c3r4kD_



81.3 21 PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
17c2o0yB_



74.3 16 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.
18c2xroE_



64.9 19 PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
19d1j5ya1



58.2 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
20c1mkmA_



56.7 21 PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
21c3lstB_



not modelled 41.2 27 PDB header:transferase
Chain: B: PDB Molecule:calo1 methyltransferase;
PDBTitle: crystal structure of calo1, methyltransferase in calicheamicin2 biosynthesis, sah bound form
22c2zmeA_



not modelled 37.2 35 PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
23c3cuqA_



not modelled 37.0 35 PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
24c3eqxB_



not modelled 36.0 18 PDB header:dna binding protein
Chain: B: PDB Molecule:fic domain containing transcriptional regulator;
PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution
25c1f5tA_



not modelled 34.1 8 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
26c2ia2D_



not modelled 33.9 21 PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1
27d1jhfa1



not modelled 32.6 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
28c3mq0A_



not modelled 32.4 22 PDB header:transcription repressor
Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon;
PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr
29c1w7pD_



not modelled 29.5 16 PDB header:protein transport
Chain: D: PDB Molecule:vps36p, ylr417w;
PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36)
30c2v9vA_



not modelled 26.9 24 PDB header:transcription
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of moorella thermoacetica selb(377-511)
31c1u5tB_



not modelled 25.4 16 PDB header:transport protein
Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
32c2v79B_



not modelled 25.0 23 PDB header:dna-binding protein
Chain: B: PDB Molecule:dna replication protein dnad;
PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis
33c3cuoB_



not modelled 24.8 20 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
34c2vn2B_



not modelled 24.7 18 PDB header:replication
Chain: B: PDB Molecule:chromosome replication initiation protein;
PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426
35c2x4hA_



not modelled 24.7 9 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
36c1u5tA_



not modelled 23.9 23 PDB header:transport protein
Chain: A: PDB Molecule:appears to be functionally related to snf7;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
37c2oqgA_



not modelled 21.6 22 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
38c2zmeB_



not modelled 21.6 26 PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
39d2b0la1



not modelled 21.6 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CodY HTH domain
40d1biaa1



not modelled 18.8 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
41c3f6vA_



not modelled 17.7 39 PDB header:transcription regulator
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family
PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance
42c3f6oB_



not modelled 17.2 20 PDB header:transcription regulator
Chain: B: PDB Molecule:probable transcriptional regulator, arsr family
PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
43c3dp7B_



not modelled 16.8 28 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase from bacteroides2 vulgatus atcc 8482
44c3mczB_



not modelled 16.4 37 PDB header:transferase
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: the structure of an o-methyltransferase family protein from2 burkholderia thailandensis.
45c1j5yA_



not modelled 16.0 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, biotin repressor family;
PDBTitle: crystal structure of transcriptional regulator (tm1602) from2 thermotoga maritima at 2.3 a resolution
46d1u2wa1



not modelled 15.8 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
47d1tw3a1



not modelled 15.5 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
48d1u5ta2



not modelled 15.2 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
49c2h09A_



not modelled 14.5 19 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
50d1wi9a_



not modelled 13.9 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PCI domain (PINT motif)
51d1sfxa_



not modelled 12.9 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
52c3hruA_



not modelled 11.6 19 PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
53d2htja1



not modelled 10.9 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FaeA-like
54c1r22B_



not modelled 10.8 25 PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
55c1x1aA_



not modelled 10.2 17 PDB header:transferase
Chain: A: PDB Molecule:crtf-related protein;
PDBTitle: crystal structure of bchu complexed with s-adenosyl-l-methionine
56c2it0A_



not modelled 10.0 11 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
57c1fx7C_



not modelled 9.6 9 PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
58d1ku9a_



not modelled 8.7 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
59c3boqB_



not modelled 7.8 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi
60c2eo4A_



not modelled 7.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding
PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7
61c3r0aB_



not modelled 7.3 7 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
62d2frha1



not modelled 6.7 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
63c3jthA_



not modelled 6.6 24 PDB header:transcription
Chain: A: PDB Molecule:transcription activator hlyu;
PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6
64c1dpuA_



not modelled 6.1 12 PDB header:dna binding protein
Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain;
PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88)
65d1dpua_



not modelled 6.1 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal domain of RPA32
66d2qn6b1



not modelled 6.1 15 Fold:Ferredoxin-like
Superfamily:eIF-2-alpha, C-terminal domain
Family:eIF-2-alpha, C-terminal domain
67c3d5cX_



not modelled 6.1 16 PDB header:ribosome
Chain: X: PDB Molecule:peptide chain release factor 1;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400.
68c3gwzB_



not modelled 5.9 20 PDB header:transferase
Chain: B: PDB Molecule:mmcr;
PDBTitle: structure of the mitomycin 7-o-methyltransferase mmcr
69d1stza1



not modelled 5.7 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
70c3nzlA_



not modelled 5.7 43 PDB header:transcription
Chain: A: PDB Molecule:dna-binding protein satb1;
PDBTitle: crystal structure of the n-terminal domain of dna-binding protein2 satb1 from homo sapiens, northeast structural genomics consortium3 target hr4435b
71d1qzza1



not modelled 5.5 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
72c2ifoA_



not modelled 5.4 15 PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: model-building studies of inovirus: genetic variations on a2 geometric theme
73d2a61a1



not modelled 5.3 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0