Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	C	R	G	L	I	A	L	L	I	W	G	Q	S	V	A	A	A	D	L	G	T	W	G	D	L	W	P	V	K	E	P	D	M	L	T	V	I	M	Q	R	L	T	A	L	E	Q	S	G	E	M	G	R	K	M	D	A	F	K
Secondary structure
SS confidence
Disorder		?	?											?	?	?	?		?																														?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	R	V	I	R	N	S	L	R	P	P	A	V	P	G	I	G	R	T	E	K	Y	G	S	R	L	F	D	P	S	V	R	L	A	A	D	I	R	D	N	E	G	R	V	F	A	R	Q	G	E	V	M	N	P	L	Q	Y	V	P	F
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	Q	T	L	Y	F	I	N	G	D	D	P	A	Q	V	A	W	M	K	R	Q	T	P	P	T	L	E	S	K	I	I	L	V	Q	G	S	I	P	E	M	Q	K	S	L	D	S	R	V	Y	F	D	Q	N	G	V	L	C	Q	R	L
Secondary structure
SS confidence
Disorder																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence		G	I	D	Q	V	P	A	R	V	S	A	V	P	G	D	R	F	L	K	V	E	F	I	P	A	E	E	G	R	K
Secondary structure
SS confidence
Disorder															?										?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2fu3 chain A Region: 100 - 171 Aligned: 71 Modelled: 72 Confidence: 72.2% Identity: 20% PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain Phyre2 PDB 2bhv chain C Region: 89 - 112 Aligned: 24 Modelled: 24 Confidence: 60.3% Identity: 21% PDB header:bacterial protein Chain: C: PDB Molecule:comb10; PDBTitle: structure of comb10 of the com type iv secretion system of2 helicobacter pylori Phyre2 PDB 3jqo chain V Region: 90 - 112 Aligned: 23 Modelled: 23 Confidence: 57.7% Identity: 22% PDB header:transport protein Chain: V: PDB Molecule:traf protein; PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system Phyre2 PDB 2gtt chain A domain 1 Region: 102 - 118 Aligned: 17 Modelled: 17 Confidence: 57.5% Identity: 29% Fold: Rhabdovirus nucleoprotein-like Superfamily: Rhabdovirus nucleoprotein-like Family: Rhabdovirus nucleocapsid protein Phyre2 PDB 2gic chain A domain 1 Region: 102 - 120 Aligned: 19 Modelled: 19 Confidence: 55.1% Identity: 16% Fold: Rhabdovirus nucleoprotein-like Superfamily: Rhabdovirus nucleoprotein-like Family: Rhabdovirus nucleocapsid protein Phyre2 PDB 3emx chain B Region: 157 - 197 Aligned: 41 Modelled: 41 Confidence: 52.0% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from aeropyrum pernix Phyre2 PDB 2nqq chain A Region: 100 - 171 Aligned: 70 Modelled: 72 Confidence: 51.9% Identity: 19% PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q Phyre2 PDB 2qsi chain B Region: 157 - 197 Aligned: 41 Modelled: 41 Confidence: 50.2% Identity: 20% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg; PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009 Phyre2 PDB 3e7h chain A Region: 92 - 114 Aligned: 23 Modelled: 23 Confidence: 47.7% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: the crystal structure of the beta subunit of the dna-2 directed rna polymerase from vibrio cholerae o1 biovar3 eltor Phyre2 PDB 1j08 chain A domain 2 Region: 171 - 207 Aligned: 37 Modelled: 37 Confidence: 47.2% Identity: 19% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: PDI-like Phyre2 PDB 2hfd chain A domain 1 Region: 171 - 201 Aligned: 31 Modelled: 31 Confidence: 43.9% Identity: 19% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: HyaE-like Phyre2 PDB 2yjp chain B Region: 24 - 73 Aligned: 50 Modelled: 50 Confidence: 41.7% Identity: 14% PDB header:transport protein Chain: B: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the solute receptors for l-cysteine of2 neisseria gonorrhoeae Phyre2 PDB 1v58 chain A domain 1 Region: 175 - 208 Aligned: 34 Modelled: 34 Confidence: 40.8% Identity: 18% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbC/DsbG C-terminal domain-like Phyre2 PDB 1wou chain A Region: 171 - 197 Aligned: 27 Modelled: 27 Confidence: 36.7% Identity: 19% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Txnl5-like Phyre2 PDB 1v9w chain A Region: 157 - 197 Aligned: 41 Modelled: 41 Confidence: 36.3% Identity: 27% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Txnl5-like Phyre2 PDB 1hyu chain A domain 4 Region: 171 - 189 Aligned: 19 Modelled: 19 Confidence: 36.0% Identity: 16% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: PDI-like Phyre2 PDB 1nho chain A Region: 171 - 189 Aligned: 19 Modelled: 19 Confidence: 35.6% Identity: 21% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 PDB 1syr chain A Region: 171 - 210 Aligned: 40 Modelled: 40 Confidence: 35.3% Identity: 10% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 PDB 1zma chain A domain 1 Region: 157 - 200 Aligned: 43 Modelled: 44 Confidence: 34.1% Identity: 19% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 PDB 2fgx chain A Region: 171 - 197 Aligned: 26 Modelled: 27 Confidence: 33.7% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. Phyre2 1 c2fu3A_ 2 c2bhvC_ 3 c3jqoV_ 4 d2gtta1 5 d2gica1 6 c3emxB_ 7 c2nqqA_ 8 c2qsiB_ 9 c3e7hA_ 10 d1j08a2 11 d2hfda1 12 c2yjpB_ 13 d1v58a1 14 d1woua_ 15 d1v9wa_ 16 d1hyua4 17 d1nhoa_ 18 d1syra_ 19 d1zmaa1 20 c2fgxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2fu3A_ 72.2 20 PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain 2 c2bhvC_ 60.3 21 PDB header:bacterial protein Chain: C: PDB Molecule:comb10; PDBTitle: structure of comb10 of the com type iv secretion system of2 helicobacter pylori 3 c3jqoV_ 57.7 22 PDB header:transport protein Chain: V: PDB Molecule:traf protein; PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system 4 d2gtta1 57.5 29 Fold:Rhabdovirus nucleoprotein-like Superfamily:Rhabdovirus nucleoprotein-like Family:Rhabdovirus nucleocapsid protein 5 d2gica1 55.1 16 Fold:Rhabdovirus nucleoprotein-like Superfamily:Rhabdovirus nucleoprotein-like Family:Rhabdovirus nucleocapsid protein 6 c3emxB_ 52.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from aeropyrum pernix 7 c2nqqA_ 51.9 19 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 8 c2qsiB_ 50.2 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg; PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009 9 c3e7hA_ 47.7 13 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: the crystal structure of the beta subunit of the dna-2 directed rna polymerase from vibrio cholerae o1 biovar3 eltor 10 d1j08a2 47.2 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 11 d2hfda1 43.9 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:HyaE-like 12 c2yjpB_ 41.7 14 PDB header:transport protein Chain: B: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the solute receptors for l-cysteine of2 neisseria gonorrhoeae 13 d1v58a1 40.8 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 14 d1woua_ 36.7 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like 15 d1v9wa_ 36.3 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like 16 d1hyua4 36.0 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 17 d1nhoa_ 35.6 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 18 d1syra_ 35.3 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 19 d1zmaa1 34.1 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 20 c2fgxA_ 33.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. 21 c2vm2C_ not modelled 33.2 11 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin h isoform 1.; PDBTitle: crystal structure of barley thioredoxin h isoform 12 crystallized using peg as precipitant 22 d1j08a1 not modelled 31.6 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 23 d2nqra2 not modelled 31.4 18 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 24 c2l6dA_ not modelled 30.3 23 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form 25 c2dizA_ not modelled 29.8 11 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin domain-containing protein 5; PDBTitle: the solution structure of the third thioredoxin domain of2 human thioredoxin domain-containing protein 5 26 d1a8la1 not modelled 29.8 28 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 27 d1fo5a_ not modelled 29.8 32 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 28 d1uz5a2 not modelled 29.4 29 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 29 c3nvbA_ not modelled 29.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate 30 d1h6ua1 not modelled 28.9 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Internalin Ig-like domain 31 c3dmlA_ not modelled 28.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the periplasmic thioredoxin soxs from2 paracoccus pantotrophus (reduced form) 32 c2pptA_ not modelled 28.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 33 d1h6ta1 not modelled 28.0 5 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Internalin Ig-like domain 34 c1v57A_ not modelled 27.6 18 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg; PDBTitle: crystal structure of the disulfide bond isomerase dsbg 35 c3gnjD_ not modelled 26.9 23 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:thioredoxin domain protein; PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb 36 c3cxgA_ not modelled 26.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: crystal structure of plasmodium falciparum thioredoxin, pfi0790w 37 d1gh2a_ not modelled 26.2 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 38 d1qgva_ not modelled 25.7 0 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:spliceosomal protein U5-15Kd 39 d1spgb_ not modelled 25.5 8 Fold:Globin-like Superfamily:Globin-like Family:Globins 40 c2y7iB_ not modelled 25.3 19 PDB header:arginine-binding protein Chain: B: PDB Molecule:stm4351; PDBTitle: structural basis for high arginine specificity in salmonella2 typhimurium periplasmic binding protein stm4351. 41 d1wu2a2 not modelled 25.2 33 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 42 c2l5lA_ not modelled 24.4 14 PDB header:transport protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of thioredoxin from bacteroides vulgatus 43 c2f51B_ not modelled 23.9 18 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: structure of trichomonas vaginalis thioredoxin 44 c3d6iB_ not modelled 23.5 19 PDB header:oxidoreductase Chain: B: PDB Molecule:monothiol glutaredoxin-3; PDBTitle: structure of the thioredoxin-like domain of yeast2 glutaredoxin 3 45 d1a8la2 not modelled 23.5 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 46 c2dmlA_ not modelled 23.1 21 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a6 47 c3gv1A_ not modelled 22.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae 48 d1wdna_ not modelled 22.1 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 49 d2omza1 not modelled 21.7 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Internalin Ig-like domain 50 c1j08A_ not modelled 21.4 19 PDB header:isomerase Chain: A: PDB Molecule:glutaredoxin-like protein; PDBTitle: crystal structure of glutaredoxin-like protein from2 pyrococcus horikoshii 51 c2i9hA_ not modelled 20.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin i; PDBTitle: nmr solution structure of the reduced form of thioredoxin 12 from yeast (trx1) 52 d2b5ea4 not modelled 20.7 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 53 c3kzqE_ not modelled 20.5 21 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 54 c2pyyB_ not modelled 20.1 21 PDB header:transport protein Chain: B: PDB Molecule:ionotropic glutamate receptor bacterial homologue; PDBTitle: crystal structure of the glur0 ligand-binding core from nostoc2 punctiforme in complex with (l)-glutamate 55 c1zypB_ not modelled 20.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf 56 c1wu2B_ not modelled 19.3 29 PDB header:structural genomics,biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein; PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3 57 c1w89E_ not modelled 19.0 24 PDB header:electron transport Chain: E: PDB Molecule:thioredoxin; PDBTitle: structure of the reduced form of human thioredoxin 2 58 c3h7mA_ not modelled 18.9 15 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of a histidine kinase sensor domain with2 similarity to periplasmic binding proteins 59 c1yvyA_ not modelled 18.7 18 PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxykinase [atp]; PDBTitle: crystal strucutre of anaerobiospirillum succiniciproducens2 phosphoenolpyruvate carboxykinase 60 d1thxa_ not modelled 18.5 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 61 d1dbya_ not modelled 18.4 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 62 c1zu4A_ not modelled 18.3 16 PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212 63 c3delC_ not modelled 18.2 11 PDB header:protein binding, transport protein Chain: C: PDB Molecule:arginine binding protein; PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis 64 c3kzgB_ not modelled 18.2 14 PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila 65 d2ftsa2 not modelled 18.1 27 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 66 c2vhaB_ not modelled 17.9 18 PDB header:transport protein Chain: B: PDB Molecule:periplasmic binding transport protein; PDBTitle: debp 67 d1l1fa2 not modelled 17.8 12 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 68 d1eeja1 not modelled 17.7 32 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 69 d1r89a1 not modelled 17.6 12 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain 70 d1lsta_ not modelled 17.5 18 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 71 c2vimA_ not modelled 17.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: x-ray structure of fasciola hepatica thioredoxin 72 d1hsla_ not modelled 17.2 6 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 73 c3apsA_ not modelled 17.2 27 PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of trx4 domain of erdj5 74 c2ieeB_ not modelled 17.2 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574. 75 c3tcoA_ not modelled 17.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin (trxa-1); PDBTitle: crystallographic and spectroscopic characterization of sulfolobus2 solfataricus trxa1 provide insights into the determinants of3 thioredoxin fold stability 76 d2bv3a4 not modelled 16.6 16 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 77 d2es7a1 not modelled 16.6 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:HyaE-like 78 d1m7ta_ not modelled 16.6 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 79 c1jzdA_ not modelled 16.5 27 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 80 c2oe0B_ not modelled 16.5 16 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin-3; PDBTitle: crystal structure of mitochondrial thioredoxin 3 from2 saccharomyces cerevisiae 81 c3kbrA_ not modelled 16.4 22 PDB header:lyase Chain: A: PDB Molecule:cyclohexadienyl dehydratase; PDBTitle: the crystal structure of cyclohexadienyl dehydratase precursor from2 pseudomonas aeruginosa pa01 82 d2f34a1 not modelled 16.3 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 83 c1t3bA_ not modelled 15.8 19 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 84 d2cvba1 not modelled 15.7 5 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 85 c2ylnA_ not modelled 15.7 11 PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation 86 d1xwaa_ not modelled 15.7 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 87 d1ep7a_ not modelled 15.6 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 88 c1xbsA_ not modelled 15.6 21 PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein 89 d1ti3a_ not modelled 15.5 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 90 d1t3ba1 not modelled 15.4 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 91 c2xbqB_ not modelled 15.3 18 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of reduced schistosoma mansoni2 thioredoxin pre-protein at 1.7 angstrom 92 c3hypB_ not modelled 15.3 18 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant 93 c3g41A_ not modelled 15.1 22 PDB header:transport protein Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae 94 c3kp8A_ not modelled 15.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: the thioredoxin-like domain of a vkor homolog from2 synechococcus sp. 95 c3g9bA_ not modelled 15.0 24 PDB header:transferase Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide-protein PDBTitle: crystal structure of reduced ost6l 96 c2dj1A_ not modelled 15.0 11 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a4 97 c1t00A_ not modelled 14.8 11 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: the structure of thioredoxin from s. coelicolor 98 d1dd9a_ not modelled 14.7 22 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 99 c1dd9A_ not modelled 14.7 22 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0