PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2yjpB_

Fold library id	PDB Header	Molecule	Title
c2yjpB_	PDB header: transport protein	Chain: B: PDB Molecule: putative abc transporter, periplasmic binding protein,	PDBTitle: crystal structure of the solute receptors for l-cysteine of2 neisseria gonorrhoeae

Links to external resources
Added to library: Sat Dec 17 18:35:27 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A T V A A I K E K G V I R I G V F G D K P P F G Y V D A N G K N Q G F D V E I A K D L A K D L L G S P D K V E F V L T E A A N R V E Y V R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S T T T
T T S
S S S G G G
G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G K V D L I L A N F T Q T P E R A E A V D F A D P Y M K V A L G V V S P K N K P I T D M A Q L K D Q T L L V N K G T T A D A F F T K S H P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S
S S
B
T T G G G T
S
T T S
S G G G T T T S T T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V K L L K F D Q N T E T F D A L K D G R G V A L A H D N A L L W A W A K E N P N F E V A I G N L G P A E F I A P A V Q K G N A D L L N W V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S T T S S S
T T
S S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . .

Sequence G E I A A M K K D G R L K A A Y E K T L L P V Y G E K V K P E A L L A E C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T G G G S
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	T	V	A	A	I	K	E	K	G	V	I	R	I	G	V	F	G	D	K	P	P	F	G	Y	V	D	A	N	G	K	N	Q	G	F	D	V	E	I	A	K	D	L	A	K	D	L	L	G	S	P	D	K	V	E	F	V	L	T	E	A	A	N	R	V	E	Y	V	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T								S			T	T	T					T	T	S				S															S	S	G	G	G								G	G	G							T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	K	V	D	L	I	L	A	N	F	T	Q	T	P	E	R	A	E	A	V	D	F	A	D	P	Y	M	K	V	A	L	G	V	V	S	P	K	N	K	P	I	T	D	M	A	Q	L	K	D	Q	T	L	L	V	N	K	G	T	T	A	D	A	F	F	T	K	S	H	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S		S				S	S		B			T	T	G	G	G	T					S													T	T	S				S	G	G	G	T	T	T	S						T	T	S											T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	K	L	L	K	F	D	Q	N	T	E	T	F	D	A	L	K	D	G	R	G	V	A	L	A	H	D	N	A	L	L	W	A	W	A	K	E	N	P	N	F	E	V	A	I	G	N	L	G	P	A	E	F	I	A	P	A	V	Q	K	G	N	A	D	L	L	N	W	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						S	S										T	T	S	S	S																	T	T								S	S	S										T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Sequence	G	E	I	A	A	M	K	K	D	G	R	L	K	A	A	Y	E	K	T	L	L	P	V	Y	G	E	K	V	K	P	E	A	L	L	A	E	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S										T					G	G	G	S						B