PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1zypB_

Fold library id	PDB Header	Molecule	Title
c1zypB_	PDB header: oxidoreductase	Chain: B: PDB Molecule: alkyl hydroperoxide reductase subunit f;	PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf

Links to external resources
Added to library: Tue Mar 16 12:26:43 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M L D T N M K T Q L R A Y L E K L T K P V E L I A T L D D S A K S A E I K E L L A E I A E L S D K V T F K E D N T L P V R K P S F L I T N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
S S T T
T T
T T S S S
S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G S Q Q G P R F A G S P L G H E F T S L V L A L L W T G G H P S K E A Q S L L E Q I R D I D G D F E F E T Y Y S L S C H N C P D V V Q A L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S
G G G T S
S S
T
S
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . .

Sequence L M A V L N P R I K H T A I D G G T F Q N E I T E R N V M G V P A V F V N G K E F G Q G R M T L T E I V A K V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T T
T T
S S
T T S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	L	D	T	N	M	K	T	Q	L	R	A	Y	L	E	K	L	T	K	P	V	E	L	I	A	T	L	D	D	S	A	K	S	A	E	I	K	E	L	L	A	E	I	A	E	L	S	D	K	V	T	F	K	E	D	N	T	L	P	V	R	K	P	S	F	L	I	T	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														G	G	G			S										S	S															T	T		T	T							T	T	S	S	S		S	S							T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	S	Q	Q	G	P	R	F	A	G	S	P	L	G	H	E	F	T	S	L	V	L	A	L	L	W	T	G	G	H	P	S	K	E	A	Q	S	L	L	E	Q	I	R	D	I	D	G	D	F	E	F	E	T	Y	Y	S	L	S	C	H	N	C	P	D	V	V	Q	A	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T				S					S				G	G	G												T	S				S	S										T			S										T	T		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Sequence	L	M	A	V	L	N	P	R	I	K	H	T	A	I	D	G	G	T	F	Q	N	E	I	T	E	R	N	V	M	G	V	P	A	V	F	V	N	G	K	E	F	G	Q	G	R	M	T	L	T	E	I	V	A	K	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S		T	T								T	T	T								T	T			S	S						T	T						S											T